RNA–Protein interactions for RNA: ENST00000485994.5

VPS50-218, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 573 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-218ENST00000485994 PHF7Q9BWX1 381 aaPredicted RBP7.7□□□□□ -1.18
VPS50-218ENST00000485994 VN1R3Q9BXE9 311 aa7.7□□□□□ -1.18
VPS50-218ENST00000485994 MRPL4Q9BYD3 311 aaKnown RBP7.7□□□□□ -1.18
VPS50-218ENST00000485994 ADAM7Q9H2U9 754 aa7.7□□□□□ -1.18
VPS50-218ENST00000485994 NXF3Q9H4D5 531 aaKnown RBP7.7□□□□□ -1.18
VPS50-218ENST00000485994 KMT5AQ9NQR1 393 aa7.7□□□□□ -1.18
VPS50-218ENST00000485994 BLOC1S4Q9NUP1 217 aa7.7□□□□□ -1.18
VPS50-218ENST00000485994 FNIP2Q9P278 1114 aa7.7□□□□□ -1.18
VPS50-218ENST00000485994 PARP2Q9UGN5 583 aa7.7□□□□□ -1.18
VPS50-218ENST00000485994 DPP7Q9UHL4 492 aa7.7□□□□□ -1.18
VPS50-218ENST00000485994 MTMR6Q9Y217 621 aa7.7□□□□□ -1.18
VPS50-218ENST00000485994 PCDHGC5Q9Y5F6 944 aa7.7□□□□□ -1.18
VPS50-218ENST00000485994 CCDC169A6NNP5 214 aa7.69□□□□□ -1.18
VPS50-218ENST00000485994 TMEM189-UBE2V1I3L0A0 370 aa7.69□□□□□ -1.18
VPS50-218ENST00000485994 ABLIM1O14639 778 aa7.69□□□□□ -1.18
VPS50-218ENST00000485994 PTGESO14684 152 aa7.69□□□□□ -1.18
VPS50-218ENST00000485994 PIGRP01833 764 aa7.69□□□□□ -1.18
VPS50-218ENST00000485994 EDN1P05305 212 aa7.69□□□□□ -1.18
VPS50-218ENST00000485994 ADRB2P07550 413 aa7.69□□□□□ -1.18
VPS50-218ENST00000485994 MCF2P10911 925 aa7.69□□□□□ -1.18
VPS50-218ENST00000485994 MLH1P40692 756 aa7.69□□□□□ -1.18
VPS50-218ENST00000485994 GRM5P41594 1212 aa7.69□□□□□ -1.18
VPS50-218ENST00000485994 OR1G1P47890 313 aa7.69□□□□□ -1.18
VPS50-218ENST00000485994 NASPP49321 788 aaPredicted RBP7.69□□□□□ -1.18
VPS50-218ENST00000485994 SCNN1GP51170 649 aa7.69□□□□□ -1.18
VPS50-218ENST00000485994 NCKAP1LP55160 1127 aa7.69□□□□□ -1.18
VPS50-218ENST00000485994 POU5F1Q01860 360 aaKnown RBP7.69□□□□□ -1.18
VPS50-218ENST00000485994 DSG1Q02413 1049 aa7.69□□□□□ -1.18
VPS50-218ENST00000485994 TUSC3Q13454 348 aa7.69□□□□□ -1.18
VPS50-218ENST00000485994 PTPN14Q15678 1187 aa7.69□□□□□ -1.18
VPS50-218ENST00000485994 KYAT1Q16773 422 aa7.69□□□□□ -1.18
VPS50-218ENST00000485994 USP41Q3LFD5 358 aa7.69□□□□□ -1.18
VPS50-218ENST00000485994 EEF1DP3Q658K8 133 aa7.69□□□□□ -1.18
VPS50-218ENST00000485994 ATL3Q6DD88 541 aa7.69□□□□□ -1.18
VPS50-218ENST00000485994 CDK5RAP3Q96JB5 506 aa7.69□□□□□ -1.18
VPS50-218ENST00000485994 NECTIN4Q96NY8 510 aa7.69□□□□□ -1.18
VPS50-218ENST00000485994 NECAB3Q96P71 396 aaPredicted RBP7.69□□□□□ -1.18
VPS50-218ENST00000485994 KLHL5Q96PQ7 755 aa7.69□□□□□ -1.18
VPS50-218ENST00000485994 PPP1R10Q96QC0 940 aaKnown RBP7.69□□□□□ -1.18
VPS50-218ENST00000485994 RPS6KC1Q96S38 1066 aa7.69□□□□□ -1.18
VPS50-218ENST00000485994 TSPAN18Q96SJ8 248 aa7.69□□□□□ -1.18
VPS50-218ENST00000485994 RUSC1Q9BVN2 902 aa7.69□□□□□ -1.18
VPS50-218ENST00000485994 HERC2P3Q9BVR0 1158 aa7.69□□□□□ -1.18
VPS50-218ENST00000485994 EMILIN2Q9BXX0 1053 aa7.69□□□□□ -1.18
VPS50-218ENST00000485994 PRKD2Q9BZL6 878 aa7.69□□□□□ -1.18
VPS50-218ENST00000485994 GBP3Q9H0R5 595 aa7.69□□□□□ -1.18
VPS50-218ENST00000485994 ST6GALNAC4Q9H4F1 302 aa7.69□□□□□ -1.18
VPS50-218ENST00000485994 POLD4Q9HCU8 107 aa7.69□□□□□ -1.18
VPS50-218ENST00000485994 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP7.69□□□□□ -1.18
VPS50-218ENST00000485994 MRPL17Q9NRX2 175 aaKnown RBP7.69□□□□□ -1.18
VPS50-218ENST00000485994 DZANK1Q9NVP4 752 aa7.69□□□□□ -1.18
VPS50-218ENST00000485994 SNTG2Q9NY99 539 aa7.69□□□□□ -1.18
VPS50-218ENST00000485994 STK17AQ9UEE5 414 aa7.69□□□□□ -1.18
VPS50-218ENST00000485994 ADAM28Q9UKQ2 775 aa7.69□□□□□ -1.18
VPS50-218ENST00000485994 BARX2Q9UMQ3 279 aaPredicted RBP7.69□□□□□ -1.18
VPS50-218ENST00000485994 ARIH1Q9Y4X5 557 aaPredicted RBP7.69□□□□□ -1.18
VPS50-218ENST00000485994 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.69□□□□□ -1.18
VPS50-218ENST00000485994 HCFC2Q9Y5Z7 792 aa7.69□□□□□ -1.18
VPS50-218ENST00000485994 CLIC4Q9Y696 253 aa7.69□□□□□ -1.18
VPS50-218ENST00000485994 TRIOO75962 3097 aa7.69□□□□□ -1.18
VPS50-218ENST00000485994 VPS37CA5D8V6 355 aaPredicted RBP7.68□□□□□ -1.18
VPS50-218ENST00000485994 SFI1A8K8P3 1242 aa7.68□□□□□ -1.18
VPS50-218ENST00000485994 TOM1L1O75674 476 aa7.68□□□□□ -1.18
VPS50-218ENST00000485994 MAPTP10636 758 aaKnown RBP7.68□□□□□ -1.18
VPS50-218ENST00000485994 KCNE1P15382 129 aa7.68□□□□□ -1.18
VPS50-218ENST00000485994 MTHFRP42898 656 aa7.68□□□□□ -1.18
VPS50-218ENST00000485994 CLCN4P51793 760 aa7.68□□□□□ -1.18
VPS50-218ENST00000485994 GTF2BQ00403 316 aa7.68□□□□□ -1.18
VPS50-218ENST00000485994 CREMQ03060 361 aa7.68□□□□□ -1.18
VPS50-218ENST00000485994 GRIN1Q05586 938 aa7.68□□□□□ -1.18
VPS50-218ENST00000485994 MCL1Q07820 350 aa7.68□□□□□ -1.18
VPS50-218ENST00000485994 ELAVL2Q12926 359 aaKnown RBP7.68□□□□□ -1.18
VPS50-218ENST00000485994 HERC4Q5GLZ8 1057 aaPredicted RBP7.68□□□□□ -1.18
VPS50-218ENST00000485994 FUT10Q6P4F1 479 aa7.68□□□□□ -1.18
VPS50-218ENST00000485994 PDXDC1Q6P996 788 aa7.68□□□□□ -1.18
VPS50-218ENST00000485994 LILRA6Q6PI73 481 aa7.68□□□□□ -1.18
VPS50-218ENST00000485994 DCLRE1AQ6PJP8 1040 aa7.68□□□□□ -1.18
VPS50-218ENST00000485994 C15orf39Q6ZRI6 1047 aa7.68□□□□□ -1.18
VPS50-218ENST00000485994 RTL10Q7L3V2 364 aa7.68□□□□□ -1.18
VPS50-218ENST00000485994 TAS1R1Q7RTX1 841 aa7.68□□□□□ -1.18
VPS50-218ENST00000485994 HAUS6Q7Z4H7 955 aa7.68□□□□□ -1.18
VPS50-218ENST00000485994 LAPTM4BQ86VI4 370 aa7.68□□□□□ -1.18
VPS50-218ENST00000485994 CDR2LQ86X02 465 aaPredicted RBP7.68□□□□□ -1.18
VPS50-218ENST00000485994 TMEM87AQ8NBN3 555 aa7.68□□□□□ -1.18
VPS50-218ENST00000485994 LINC00301Q8NCQ3 95 aa7.68□□□□□ -1.18
VPS50-218ENST00000485994 CMASQ8NFW8 434 aaPredicted RBP7.68□□□□□ -1.18
VPS50-218ENST00000485994 LARP4BQ92615 738 aaKnown RBP7.68□□□□□ -1.18
VPS50-218ENST00000485994 RAD54LQ92698 747 aa7.68□□□□□ -1.18
VPS50-218ENST00000485994 DDX27Q96GQ7 796 aaKnown RBP7.68□□□□□ -1.18
VPS50-218ENST00000485994 UROC1Q96N76 676 aa7.68□□□□□ -1.18
VPS50-218ENST00000485994 FIZ1Q96SL8 496 aa7.68□□□□□ -1.18
VPS50-218ENST00000485994 CCDC94Q9BW85 323 aaPredicted RBP7.68□□□□□ -1.18
VPS50-218ENST00000485994 TARS2Q9BW92 718 aaKnown RBP7.68□□□□□ -1.18
VPS50-218ENST00000485994 EPHX3Q9H6B9 360 aa7.68□□□□□ -1.18
VPS50-218ENST00000485994 PLEKHA5Q9HAU0 1116 aa7.68□□□□□ -1.18
VPS50-218ENST00000485994 TOPORSQ9NS56 1045 aaPredicted RBP7.68□□□□□ -1.18
VPS50-218ENST00000485994 MARCH5Q9NX47 278 aa7.68□□□□□ -1.18
VPS50-218ENST00000485994 CCDC39Q9UFE4 941 aa7.68□□□□□ -1.18
VPS50-218ENST00000485994 FBXO2Q9UK22 296 aaPredicted RBP7.68□□□□□ -1.18
VPS50-218ENST00000485994 USP15Q9Y4E8 981 aaPredicted RBP7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms