RNA–Protein interactions for RNA: ENST00000475251.1

SKA3-206, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-206ENST00000475251 PATJQ8NI35 1801 aa13.95□□□□□ -0.18
SKA3-206ENST00000475251 CCL16O15467 120 aa13.95□□□□□ -0.18
SKA3-206ENST00000475251 LRRN2O75325 713 aa13.95□□□□□ -0.18
SKA3-206ENST00000475251 SLITRK3O94933 977 aa13.95□□□□□ -0.18
SKA3-206ENST00000475251 THP07101 528 aa13.95□□□□□ -0.18
SKA3-206ENST00000475251 RPS9P46781 194 aaKnown RBP13.95□□□□□ -0.18
SKA3-206ENST00000475251 SPIRE1Q08AE8 756 aa13.95□□□□□ -0.18
SKA3-206ENST00000475251 TOB2Q14106 344 aaPredicted RBP13.95□□□□□ -0.18
SKA3-206ENST00000475251 PPP2R5DQ14738 602 aa13.95□□□□□ -0.18
SKA3-206ENST00000475251 AXDND1Q5T1B0 1012 aaPredicted RBP13.95□□□□□ -0.18
SKA3-206ENST00000475251 PIK3AP1Q6ZUJ8 805 aa13.95□□□□□ -0.18
SKA3-206ENST00000475251 ZBTB8OSQ8IWT0 167 aa13.95□□□□□ -0.18
SKA3-206ENST00000475251 ZBTB44Q8NCP5 570 aa13.95□□□□□ -0.18
SKA3-206ENST00000475251 ST13P5Q8NFI4 369 aaPredicted RBP13.95□□□□□ -0.18
SKA3-206ENST00000475251 SLC7A14Q8TBB6 771 aa13.95□□□□□ -0.18
SKA3-206ENST00000475251 ASAP3Q8TDY4 903 aa13.95□□□□□ -0.18
SKA3-206ENST00000475251 EPC1Q9H2F5 836 aa13.95□□□□□ -0.18
SKA3-206ENST00000475251 ZSWIM6Q9HCJ5 1215 aa13.95□□□□□ -0.18
SKA3-206ENST00000475251 CDV3Q9UKY7 258 aaKnown RBP13.95□□□□□ -0.18
SKA3-206ENST00000475251 KCNJ14Q9UNX9 436 aa13.95□□□□□ -0.18
SKA3-206ENST00000475251 OTOGLQ3ZCN5 2332 aa13.95□□□□□ -0.18
SKA3-206ENST00000475251 CASTOR2A6NHX0 329 aa13.94□□□□□ -0.18
SKA3-206ENST00000475251 N4BP3O15049 544 aa13.94□□□□□ -0.18
SKA3-206ENST00000475251 ZBTB39O15060 712 aa13.94□□□□□ -0.18
SKA3-206ENST00000475251 B4GALT5O43286 388 aa13.94□□□□□ -0.18
SKA3-206ENST00000475251 EPB41L2O43491 1005 aaKnown RBP13.94□□□□□ -0.18
SKA3-206ENST00000475251 TBC1D4O60343 1298 aa13.94□□□□□ -0.18
SKA3-206ENST00000475251 ECI2O75521 394 aa13.94□□□□□ -0.18
SKA3-206ENST00000475251 KIF4AO95239 1232 aa13.94□□□□□ -0.18
SKA3-206ENST00000475251 GLRA2P23416 452 aa13.94□□□□□ -0.18
SKA3-206ENST00000475251 NTHL1P78549 312 aa13.94□□□□□ -0.18
SKA3-206ENST00000475251 RAB33AQ14088 237 aa13.94□□□□□ -0.18
SKA3-206ENST00000475251 TMEM132AQ24JP5 1023 aa13.94□□□□□ -0.18
SKA3-206ENST00000475251 PABPC1LQ4VXU2 614 aaKnown RBP13.94□□□□□ -0.18
SKA3-206ENST00000475251 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.94□□□□□ -0.18
SKA3-206ENST00000475251 ZNF852Q6ZMS4 543 aa13.94□□□□□ -0.18
SKA3-206ENST00000475251 HASPINQ8TF76 798 aa13.94□□□□□ -0.18
SKA3-206ENST00000475251 RABGGTAQ92696 567 aa13.94□□□□□ -0.18
SKA3-206ENST00000475251 CLDN23Q96B33 292 aa13.94□□□□□ -0.18
SKA3-206ENST00000475251 AIFM3Q96NN9 605 aa13.94□□□□□ -0.18
SKA3-206ENST00000475251 EIF2AK1Q9BQI3 630 aaKnown RBP13.94□□□□□ -0.18
SKA3-206ENST00000475251 ADPGKQ9BRR6 497 aa13.94□□□□□ -0.18
SKA3-206ENST00000475251 GDE1Q9NZC3 331 aa13.94□□□□□ -0.18
SKA3-206ENST00000475251 GMEB2Q9UKD1 530 aa13.94□□□□□ -0.18
SKA3-206ENST00000475251 PCDHA12Q9UN75 941 aa13.94□□□□□ -0.18
SKA3-206ENST00000475251 SMG5Q9UPR3 1016 aaKnown RBP13.94□□□□□ -0.18
SKA3-206ENST00000475251 STK36Q9NRP7 1315 aa13.93□□□□□ -0.18
SKA3-206ENST00000475251 DNAH14Q0VDD8 3507 aa13.93□□□□□ -0.18
SKA3-206ENST00000475251 CACNA1IQ9P0X4 2223 aa13.93□□□□□ -0.18
SKA3-206ENST00000475251 LRRIQ4A6NIV6 560 aa13.93□□□□□ -0.18
SKA3-206ENST00000475251 LILRB5O75023 590 aa13.93□□□□□ -0.18
SKA3-206ENST00000475251 XRCC6P12956 609 aaKnown RBP eCLIP13.93□□□□□ -0.18
SKA3-206ENST00000475251 RARRES1P49788 294 aa13.93□□□□□ -0.18
SKA3-206ENST00000475251 NRLP54845 237 aa13.93□□□□□ -0.18
SKA3-206ENST00000475251 TPRG1Q6ZUI0 275 aa13.93□□□□□ -0.18
SKA3-206ENST00000475251 CDR2LQ86X02 465 aaPredicted RBP13.93□□□□□ -0.18
SKA3-206ENST00000475251 NPAS3Q8IXF0 933 aa13.93□□□□□ -0.18
SKA3-206ENST00000475251 MCPH1Q8NEM0 835 aa13.93□□□□□ -0.18
SKA3-206ENST00000475251 ITFG1Q8TB96 612 aa13.93□□□□□ -0.18
SKA3-206ENST00000475251 NELL1Q92832 810 aa13.93□□□□□ -0.18
SKA3-206ENST00000475251 HSD17B14Q9BPX1 270 aa13.93□□□□□ -0.18
SKA3-206ENST00000475251 KXD1Q9BQD3 176 aa13.93□□□□□ -0.18
SKA3-206ENST00000475251 RTKNQ9BST9 563 aa13.93□□□□□ -0.18
SKA3-206ENST00000475251 IER2Q9BTL4 223 aa13.93□□□□□ -0.18
SKA3-206ENST00000475251 POLR3FQ9H1D9 316 aaPredicted RBP13.93□□□□□ -0.18
SKA3-206ENST00000475251 C2orf40Q9H1Z8 148 aa13.93□□□□□ -0.18
SKA3-206ENST00000475251 BRMS1Q9HCU9 246 aa13.93□□□□□ -0.18
SKA3-206ENST00000475251 MRPS23Q9Y3D9 190 aaKnown RBP13.93□□□□□ -0.18
SKA3-206ENST00000475251 MTF2Q9Y483 593 aaPredicted RBP13.93□□□□□ -0.18
SKA3-206ENST00000475251 FRYLO94915 3013 aa13.92□□□□□ -0.18
SKA3-206ENST00000475251 TRAPPC3O43617 180 aa13.92□□□□□ -0.18
SKA3-206ENST00000475251 OR1D2P34982 312 aa13.92□□□□□ -0.18
SKA3-206ENST00000475251 ATXN1P54253 815 aaKnown RBP13.92□□□□□ -0.18
SKA3-206ENST00000475251 ADCY1Q08828 1119 aa13.92□□□□□ -0.18
SKA3-206ENST00000475251 STK3Q13188 491 aa13.92□□□□□ -0.18
SKA3-206ENST00000475251 FAM187BQ17R55 369 aa13.92□□□□□ -0.18
SKA3-206ENST00000475251 WASF1Q92558 559 aa13.92□□□□□ -0.18
SKA3-206ENST00000475251 DNASE1L2Q92874 299 aa13.92□□□□□ -0.18
SKA3-206ENST00000475251 CNTNAP3BQ96NU0 1288 aa13.92□□□□□ -0.18
SKA3-206ENST00000475251 PAAF1Q9BRP4 392 aa13.92□□□□□ -0.18
SKA3-206ENST00000475251 CNTNAP3Q9BZ76 1288 aa13.92□□□□□ -0.18
SKA3-206ENST00000475251 PRMT8Q9NR22 394 aaPredicted RBP13.92□□□□□ -0.18
SKA3-206ENST00000475251 DNMT3BQ9UBC3 853 aaKnown RBP13.92□□□□□ -0.18
SKA3-206ENST00000475251 MTRRQ9UBK8 725 aa13.92□□□□□ -0.18
SKA3-206ENST00000475251 RAB23Q9ULC3 237 aa13.92□□□□□ -0.18
SKA3-206ENST00000475251 USP18Q9UMW8 372 aa13.92□□□□□ -0.18
SKA3-206ENST00000475251 TMEM189-UBE2V1I3L0A0 370 aa13.91□□□□□ -0.18
SKA3-206ENST00000475251 MAN2B1O00754 1011 aa13.91□□□□□ -0.18
SKA3-206ENST00000475251 RECQL4O94761 1208 aa13.91□□□□□ -0.18
SKA3-206ENST00000475251 CD72P21854 359 aa13.91□□□□□ -0.18
SKA3-206ENST00000475251 TARSP26639 723 aaKnown RBP13.91□□□□□ -0.18
SKA3-206ENST00000475251 RBM25P49756 843 aaKnown RBP13.91□□□□□ -0.18
SKA3-206ENST00000475251 PRPF4BQ13523 1007 aaKnown RBP13.91□□□□□ -0.18
SKA3-206ENST00000475251 CALCRLQ16602 461 aa13.91□□□□□ -0.18
SKA3-206ENST00000475251 MAPK6Q16659 721 aa13.91□□□□□ -0.18
SKA3-206ENST00000475251 CDCA2Q69YH5 1023 aaPredicted RBP13.91□□□□□ -0.18
SKA3-206ENST00000475251 ANKS3Q6ZW76 656 aa13.91□□□□□ -0.18
SKA3-206ENST00000475251 APBB1IPQ7Z5R6 666 aaPredicted RBP13.91□□□□□ -0.18
SKA3-206ENST00000475251 ELSPBP1Q96BH3 223 aa13.91□□□□□ -0.18
SKA3-206ENST00000475251 UROC1Q96N76 676 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms