RNA–Protein interactions for RNA: ENST00000463041.1

PTPRF-210, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 298 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-210ENST00000463041 GDAQ9Y2T3 454 aa8□□□□□ -1.13
PTPRF-210ENST00000463041 C2orf16Q68DN1 1984 aa8□□□□□ -1.13
PTPRF-210ENST00000463041 PLXNA3P51805 1871 aa8□□□□□ -1.13
PTPRF-210ENST00000463041 SF3B1O75533 1304 aaKnown RBP eCLIP8□□□□□ -1.13
PTPRF-210ENST00000463041 DOCK8Q8NF50 2099 aa7.99□□□□□ -1.13
PTPRF-210ENST00000463041 SMIM28A0A1B0GU29 152 aa7.99□□□□□ -1.13
PTPRF-210ENST00000463041 C2CD4DB7Z1M9 353 aa7.99□□□□□ -1.13
PTPRF-210ENST00000463041 F8W810 466 aa7.99□□□□□ -1.13
PTPRF-210ENST00000463041 H0YCG3 227 aa7.99□□□□□ -1.13
PTPRF-210ENST00000463041 TMEM189-UBE2V1I3L0A0 370 aa7.99□□□□□ -1.13
PTPRF-210ENST00000463041 SLC16A4O15374 487 aa7.99□□□□□ -1.13
PTPRF-210ENST00000463041 TRAPPC3O43617 180 aa7.99□□□□□ -1.13
PTPRF-210ENST00000463041 BRD1O95696 1058 aa7.99□□□□□ -1.13
PTPRF-210ENST00000463041 EDN1P05305 212 aa7.99□□□□□ -1.13
PTPRF-210ENST00000463041 WEE2P0C1S8 567 aa7.99□□□□□ -1.13
PTPRF-210ENST00000463041 MCF2P10911 925 aa7.99□□□□□ -1.13
PTPRF-210ENST00000463041 PLS3P13797 630 aa7.99□□□□□ -1.13
PTPRF-210ENST00000463041 GRM5P41594 1212 aa7.99□□□□□ -1.13
PTPRF-210ENST00000463041 STRN3Q13033 797 aa7.99□□□□□ -1.13
PTPRF-210ENST00000463041 TMEM119Q4V9L6 283 aa7.99□□□□□ -1.13
PTPRF-210ENST00000463041 ARSHQ5FYA8 562 aa7.99□□□□□ -1.13
PTPRF-210ENST00000463041 FAM171A1Q5VUB5 890 aa7.99□□□□□ -1.13
PTPRF-210ENST00000463041 ZPBP2Q6X784 338 aa7.99□□□□□ -1.13
PTPRF-210ENST00000463041 OTOP3Q7RTS5 596 aa7.99□□□□□ -1.13
PTPRF-210ENST00000463041 ZBTB33Q86T24 672 aa7.99□□□□□ -1.13
PTPRF-210ENST00000463041 PALB2Q86YC2 1186 aa7.99□□□□□ -1.13
PTPRF-210ENST00000463041 PIK3R5Q8WYR1 880 aa7.99□□□□□ -1.13
PTPRF-210ENST00000463041 RABGGTAQ92696 567 aa7.99□□□□□ -1.13
PTPRF-210ENST00000463041 KCNN1Q92952 543 aa7.99□□□□□ -1.13
PTPRF-210ENST00000463041 DDX27Q96GQ7 796 aaKnown RBP7.99□□□□□ -1.13
PTPRF-210ENST00000463041 INTS4Q96HW7 963 aaKnown RBP7.99□□□□□ -1.13
PTPRF-210ENST00000463041 UROC1Q96N76 676 aa7.99□□□□□ -1.13
PTPRF-210ENST00000463041 ACAP3Q96P50 834 aa7.99□□□□□ -1.13
PTPRF-210ENST00000463041 PPP1R10Q96QC0 940 aaKnown RBP7.99□□□□□ -1.13
PTPRF-210ENST00000463041 PAAF1Q9BRP4 392 aa7.99□□□□□ -1.13
PTPRF-210ENST00000463041 TARS2Q9BW92 718 aaKnown RBP7.99□□□□□ -1.13
PTPRF-210ENST00000463041 BACH2Q9BYV9 841 aa7.99□□□□□ -1.13
PTPRF-210ENST00000463041 MAN1C1Q9NR34 630 aa7.99□□□□□ -1.13
PTPRF-210ENST00000463041 LIMD1Q9UGP4 676 aa7.99□□□□□ -1.13
PTPRF-210ENST00000463041 SORCS3Q9UPU3 1222 aa7.99□□□□□ -1.13
PTPRF-210ENST00000463041 VWA8A3KMH1 1905 aa7.98□□□□□ -1.13
PTPRF-210ENST00000463041 CASTOR2A6NHX0 329 aa7.98□□□□□ -1.13
PTPRF-210ENST00000463041 TGM5O43548 720 aa7.98□□□□□ -1.13
PTPRF-210ENST00000463041 TOM1L1O75674 476 aa7.98□□□□□ -1.13
PTPRF-210ENST00000463041 B3GAT3O94766 335 aa7.98□□□□□ -1.13
PTPRF-210ENST00000463041 KCNE1P15382 129 aa7.98□□□□□ -1.13
PTPRF-210ENST00000463041 PROZP22891 400 aa7.98□□□□□ -1.13
PTPRF-210ENST00000463041 RPL9P32969 192 aaKnown RBP7.98□□□□□ -1.13
PTPRF-210ENST00000463041 ABCD1P33897 745 aa7.98□□□□□ -1.13
PTPRF-210ENST00000463041 DDIT3P35638 169 aa7.98□□□□□ -1.13
PTPRF-210ENST00000463041 SF3A1Q15459 793 aaKnown RBP7.98□□□□□ -1.13
PTPRF-210ENST00000463041 UPP1Q16831 310 aa7.98□□□□□ -1.13
PTPRF-210ENST00000463041 UVSSAQ2YD98 709 aa7.98□□□□□ -1.13
PTPRF-210ENST00000463041 MPZL3Q6UWV2 235 aa7.98□□□□□ -1.13
PTPRF-210ENST00000463041 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.98□□□□□ -1.13
PTPRF-210ENST00000463041 CCDC149Q6ZUS6 474 aa7.98□□□□□ -1.13
PTPRF-210ENST00000463041 RTL10Q7L3V2 364 aa7.98□□□□□ -1.13
PTPRF-210ENST00000463041 TAS1R3Q7RTX0 852 aa7.98□□□□□ -1.13
PTPRF-210ENST00000463041 CEP57Q86XR8 500 aa7.98□□□□□ -1.13
PTPRF-210ENST00000463041 FBXL6Q8N531 539 aa7.98□□□□□ -1.13
PTPRF-210ENST00000463041 TDRD5Q8NAT2 981 aaKnown RBP7.98□□□□□ -1.13
PTPRF-210ENST00000463041 KREMEN2Q8NCW0 462 aa7.98□□□□□ -1.13
PTPRF-210ENST00000463041 TMEM161BQ8NDZ6 487 aa7.98□□□□□ -1.13
PTPRF-210ENST00000463041 LNX1Q8TBB1 728 aaPredicted RBP7.98□□□□□ -1.13
PTPRF-210ENST00000463041 STAMQ92783 540 aa7.98□□□□□ -1.13
PTPRF-210ENST00000463041 NXPE3Q969Y0 559 aa7.98□□□□□ -1.13
PTPRF-210ENST00000463041 PLIN2Q99541 437 aa7.98□□□□□ -1.13
PTPRF-210ENST00000463041 PRRX2Q99811 253 aa7.98□□□□□ -1.13
PTPRF-210ENST00000463041 CLSTN3Q9BQT9 956 aa7.98□□□□□ -1.13
PTPRF-210ENST00000463041 CCSER1Q9C0I3 900 aa7.98□□□□□ -1.13
PTPRF-210ENST00000463041 CDT1Q9H211 546 aa7.98□□□□□ -1.13
PTPRF-210ENST00000463041 CXCL16Q9H2A7 254 aa7.98□□□□□ -1.13
PTPRF-210ENST00000463041 WDR6Q9NNW5 1121 aaKnown RBP7.98□□□□□ -1.13
PTPRF-210ENST00000463041 SLC38A7Q9NVC3 462 aa7.98□□□□□ -1.13
PTPRF-210ENST00000463041 ZDHHC7Q9NXF8 308 aa7.98□□□□□ -1.13
PTPRF-210ENST00000463041 CDH22Q9UJ99 828 aa7.98□□□□□ -1.13
PTPRF-210ENST00000463041 ODF2LQ9ULJ1 636 aa7.98□□□□□ -1.13
PTPRF-210ENST00000463041 CACNA1HO95180 2353 aa7.98□□□□□ -1.13
PTPRF-210ENST00000463041 VPS37CA5D8V6 355 aaPredicted RBP7.97□□□□□ -1.13
PTPRF-210ENST00000463041 ABLIM1O14639 778 aa7.97□□□□□ -1.13
PTPRF-210ENST00000463041 CLDN3O15551 220 aa7.97□□□□□ -1.13
PTPRF-210ENST00000463041 ZMYND10O75800 440 aa7.97□□□□□ -1.13
PTPRF-210ENST00000463041 KIF4AO95239 1232 aa7.97□□□□□ -1.13
PTPRF-210ENST00000463041 SPATA31D3P0C874 917 aa7.97□□□□□ -1.13
PTPRF-210ENST00000463041 MAPTP10636 758 aaKnown RBP7.97□□□□□ -1.13
PTPRF-210ENST00000463041 RPL17P18621 184 aaKnown RBP7.97□□□□□ -1.13
PTPRF-210ENST00000463041 SYT1P21579 422 aa7.97□□□□□ -1.13
PTPRF-210ENST00000463041 FGFR3P22607 806 aa7.97□□□□□ -1.13
PTPRF-210ENST00000463041 SP100P23497 879 aaPredicted RBP7.97□□□□□ -1.13
PTPRF-210ENST00000463041 CLCNKBP51801 687 aa7.97□□□□□ -1.13
PTPRF-210ENST00000463041 MCL1Q07820 350 aa7.97□□□□□ -1.13
PTPRF-210ENST00000463041 RAD51AP2Q09MP3 1159 aa7.97□□□□□ -1.13
PTPRF-210ENST00000463041 MTMR3Q13615 1198 aa7.97□□□□□ -1.13
PTPRF-210ENST00000463041 RAB33AQ14088 237 aa7.97□□□□□ -1.13
PTPRF-210ENST00000463041 PSMD5Q16401 504 aa7.97□□□□□ -1.13
PTPRF-210ENST00000463041 KYAT1Q16773 422 aa7.97□□□□□ -1.13
PTPRF-210ENST00000463041 ZNF568Q3ZCX4 644 aa7.97□□□□□ -1.13
PTPRF-210ENST00000463041 RTP2Q5QGT7 225 aa7.97□□□□□ -1.13
PTPRF-210ENST00000463041 PRSS55Q6UWB4 352 aaPredicted RBP7.97□□□□□ -1.13
PTPRF-210ENST00000463041 SPATA31D4Q6ZUB0 917 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 73.6 ms