RNA–Protein interactions for RNA: ENST00000456506.2

LMCD1-206, Transcript of LIM and cysteine rich domains 1, humanhuman

TSL 2

Gene LMCD1, Length 1,059 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMCD1-206ENST00000456506 C8AP07357 584 aa13.17□□□□□ -0.3
LMCD1-206ENST00000456506 HNRNPA1P09651 372 aaKnown RBP eCLIP13.17□□□□□ -0.3
LMCD1-206ENST00000456506 XBP1P17861 261 aa13.17□□□□□ -0.3
LMCD1-206ENST00000456506 KRT2P35908 639 aa13.17□□□□□ -0.3
LMCD1-206ENST00000456506 NCBP1Q09161 790 aaKnown RBP13.17□□□□□ -0.3
LMCD1-206ENST00000456506 CALCRLQ16602 461 aa13.17□□□□□ -0.3
LMCD1-206ENST00000456506 SPECC1Q5M775 1068 aa13.17□□□□□ -0.3
LMCD1-206ENST00000456506 FAM171A1Q5VUB5 890 aa13.17□□□□□ -0.3
LMCD1-206ENST00000456506 RSPO2Q6UXX9 243 aaPredicted RBP13.17□□□□□ -0.3
LMCD1-206ENST00000456506 ITFG1Q8TB96 612 aa13.17□□□□□ -0.3
LMCD1-206ENST00000456506 TTPALQ9BTX7 342 aa13.17□□□□□ -0.3
LMCD1-206ENST00000456506 TMEM60Q9H2L4 133 aa13.17□□□□□ -0.3
LMCD1-206ENST00000456506 ORC3Q9UBD5 711 aaPredicted RBP13.17□□□□□ -0.3
LMCD1-206ENST00000456506 PARP2Q9UGN5 583 aa13.17□□□□□ -0.3
LMCD1-206ENST00000456506 USP20Q9Y2K6 914 aa13.17□□□□□ -0.3
LMCD1-206ENST00000456506 MTF2Q9Y483 593 aaPredicted RBP13.17□□□□□ -0.3
LMCD1-206ENST00000456506 RALGAPA1Q6GYQ0 2036 aa13.17□□□□□ -0.3
LMCD1-206ENST00000456506 OBSL1O75147 1896 aa13.16□□□□□ -0.3
LMCD1-206ENST00000456506 MED19A0JLT2 244 aaPredicted RBP13.16□□□□□ -0.3
LMCD1-206ENST00000456506 BTBD18B2RXH4 712 aa13.16□□□□□ -0.3
LMCD1-206ENST00000456506 STK25O00506 426 aa13.16□□□□□ -0.3
LMCD1-206ENST00000456506 MARCH6O60337 910 aa13.16□□□□□ -0.3
LMCD1-206ENST00000456506 NEMFO60524 1076 aa13.16□□□□□ -0.3
LMCD1-206ENST00000456506 USO1O60763 962 aaKnown RBP13.16□□□□□ -0.3
LMCD1-206ENST00000456506 MED24O75448 989 aa13.16□□□□□ -0.3
LMCD1-206ENST00000456506 TADA2AO75478 443 aa13.16□□□□□ -0.3
LMCD1-206ENST00000456506 RECQL4O94761 1208 aa13.16□□□□□ -0.3
LMCD1-206ENST00000456506 FGFR3P22607 806 aa13.16□□□□□ -0.3
LMCD1-206ENST00000456506 TXKP42681 527 aa13.16□□□□□ -0.3
LMCD1-206ENST00000456506 RAB33AQ14088 237 aa13.16□□□□□ -0.3
LMCD1-206ENST00000456506 PSMD5Q16401 504 aa13.16□□□□□ -0.3
LMCD1-206ENST00000456506 EEF1DP3Q658K8 133 aa13.16□□□□□ -0.3
LMCD1-206ENST00000456506 CATSPER3Q86XQ3 398 aa13.16□□□□□ -0.3
LMCD1-206ENST00000456506 PRMT7Q9NVM4 692 aaPredicted RBP13.16□□□□□ -0.3
LMCD1-206ENST00000456506 HCFC1R1Q9NWW0 138 aa13.16□□□□□ -0.3
LMCD1-206ENST00000456506 SNTG2Q9NY99 539 aa13.16□□□□□ -0.3
LMCD1-206ENST00000456506 EML5Q05BV3 1969 aa13.15□□□□□ -0.3
LMCD1-206ENST00000456506 KANSL1LA0AUZ9 987 aa13.15□□□□□ -0.3
LMCD1-206ENST00000456506 LRRIQ4A6NIV6 560 aa13.15□□□□□ -0.3
LMCD1-206ENST00000456506 TMEM189-UBE2V1I3L0A0 370 aa13.15□□□□□ -0.3
LMCD1-206ENST00000456506 ST3GAL1Q11201 340 aa13.15□□□□□ -0.3
LMCD1-206ENST00000456506 FZD5Q13467 585 aa13.15□□□□□ -0.3
LMCD1-206ENST00000456506 ME3Q16798 604 aa13.15□□□□□ -0.3
LMCD1-206ENST00000456506 ERICH6BQ5W0A0 696 aa13.15□□□□□ -0.3
LMCD1-206ENST00000456506 MAEAQ7L5Y9 396 aa13.15□□□□□ -0.3
LMCD1-206ENST00000456506 NPAS3Q8IXF0 933 aa13.15□□□□□ -0.3
LMCD1-206ENST00000456506 KIAA2013Q8IYS2 634 aa13.15□□□□□ -0.3
LMCD1-206ENST00000456506 DCLK2Q8N568 766 aa13.15□□□□□ -0.3
LMCD1-206ENST00000456506 NECAB1Q8N987 351 aa13.15□□□□□ -0.3
LMCD1-206ENST00000456506 C3orf58Q8NDZ4 430 aa13.15□□□□□ -0.3
LMCD1-206ENST00000456506 NSUN7Q8NE18 718 aaKnown RBP13.15□□□□□ -0.3
LMCD1-206ENST00000456506 NELL1Q92832 810 aa13.15□□□□□ -0.3
LMCD1-206ENST00000456506 GTF3C6Q969F1 213 aa13.15□□□□□ -0.3
LMCD1-206ENST00000456506 PPP1R10Q96QC0 940 aaKnown RBP13.15□□□□□ -0.3
LMCD1-206ENST00000456506 DLL3Q9NYJ7 618 aa13.15□□□□□ -0.3
LMCD1-206ENST00000456506 DNMT3BQ9UBC3 853 aaKnown RBP13.15□□□□□ -0.3
LMCD1-206ENST00000456506 CCL16O15467 120 aa13.14□□□□□ -0.31
LMCD1-206ENST00000456506 THP07101 528 aa13.14□□□□□ -0.31
LMCD1-206ENST00000456506 SNW1Q13573 536 aaKnown RBP13.14□□□□□ -0.31
LMCD1-206ENST00000456506 SLC5A9Q2M3M2 681 aa13.14□□□□□ -0.31
LMCD1-206ENST00000456506 ZNF528Q3MIS6 628 aa13.14□□□□□ -0.31
LMCD1-206ENST00000456506 PPM1LQ5SGD2 360 aa13.14□□□□□ -0.31
LMCD1-206ENST00000456506 AXDND1Q5T1B0 1012 aaPredicted RBP13.14□□□□□ -0.31
LMCD1-206ENST00000456506 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.14□□□□□ -0.31
LMCD1-206ENST00000456506 MTSS1LQ765P7 747 aa13.14□□□□□ -0.31
LMCD1-206ENST00000456506 NOSTRINQ8IVI9 506 aa13.14□□□□□ -0.31
LMCD1-206ENST00000456506 ZNF687Q8N1G0 1237 aa13.14□□□□□ -0.31
LMCD1-206ENST00000456506 MCPH1Q8NEM0 835 aa13.14□□□□□ -0.31
LMCD1-206ENST00000456506 SLC7A14Q8TBB6 771 aa13.14□□□□□ -0.31
LMCD1-206ENST00000456506 WASF1Q92558 559 aa13.14□□□□□ -0.31
LMCD1-206ENST00000456506 OSBPL6Q9BZF3 934 aa13.14□□□□□ -0.31
LMCD1-206ENST00000456506 TUFT1Q9NNX1 390 aa13.14□□□□□ -0.31
LMCD1-206ENST00000456506 MTRRQ9UBK8 725 aa13.14□□□□□ -0.31
LMCD1-206ENST00000456506 KIAA1549LQ6ZVL6 1849 aa13.13□□□□□ -0.31
LMCD1-206ENST00000456506 ACKR2O00590 384 aa13.13□□□□□ -0.31
LMCD1-206ENST00000456506 NRG2O14511 850 aaPredicted RBP13.13□□□□□ -0.31
LMCD1-206ENST00000456506 N4BP3O15049 544 aa13.13□□□□□ -0.31
LMCD1-206ENST00000456506 OR1D2P34982 312 aa13.13□□□□□ -0.31
LMCD1-206ENST00000456506 RBM25P49756 843 aaKnown RBP13.13□□□□□ -0.31
LMCD1-206ENST00000456506 CLCNKBP51801 687 aa13.13□□□□□ -0.31
LMCD1-206ENST00000456506 PRKCQQ04759 706 aa13.13□□□□□ -0.31
LMCD1-206ENST00000456506 ELAVL2Q12926 359 aaKnown RBP13.13□□□□□ -0.31
LMCD1-206ENST00000456506 PRPF4BQ13523 1007 aaKnown RBP13.13□□□□□ -0.31
LMCD1-206ENST00000456506 MLF2Q15773 248 aaPredicted RBP13.13□□□□□ -0.31
LMCD1-206ENST00000456506 UPP1Q16831 310 aa13.13□□□□□ -0.31
LMCD1-206ENST00000456506 UVSSAQ2YD98 709 aa13.13□□□□□ -0.31
LMCD1-206ENST00000456506 SLC44A4Q53GD3 710 aa13.13□□□□□ -0.31
LMCD1-206ENST00000456506 LIN9Q5TKA1 542 aa13.13□□□□□ -0.31
LMCD1-206ENST00000456506 CEP57Q86XR8 500 aa13.13□□□□□ -0.31
LMCD1-206ENST00000456506 DIS3L2Q8IYB7 885 aaKnown RBP13.13□□□□□ -0.31
LMCD1-206ENST00000456506 KCNG4Q8TDN1 519 aa13.13□□□□□ -0.31
LMCD1-206ENST00000456506 RUBCNQ92622 972 aa13.13□□□□□ -0.31
LMCD1-206ENST00000456506 CLDN23Q96B33 292 aa13.13□□□□□ -0.31
LMCD1-206ENST00000456506 DDX27Q96GQ7 796 aaKnown RBP13.13□□□□□ -0.31
LMCD1-206ENST00000456506 KXD1Q9BQD3 176 aa13.13□□□□□ -0.31
LMCD1-206ENST00000456506 POLR3CQ9BUI4 534 aaPredicted RBP13.13□□□□□ -0.31
LMCD1-206ENST00000456506 PLA2G2FQ9BZM2 168 aa13.13□□□□□ -0.31
LMCD1-206ENST00000456506 AVENQ9NQS1 362 aaPredicted RBP13.13□□□□□ -0.31
LMCD1-206ENST00000456506 FBXO4Q9UKT5 387 aa13.13□□□□□ -0.31
LMCD1-206ENST00000456506 GPR179Q6PRD1 2367 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms