RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 CREMQ03060 361 aa13.21□□□□□ -0.29
USP40-210ENST00000454354 KARSQ15046 597 aaKnown RBP13.21□□□□□ -0.29
USP40-210ENST00000454354 MPZL3Q6UWV2 235 aa13.21□□□□□ -0.29
USP40-210ENST00000454354 ALKAL1Q6UXT8 129 aa13.21□□□□□ -0.29
USP40-210ENST00000454354 ZPBP2Q6X784 338 aa13.21□□□□□ -0.29
USP40-210ENST00000454354 C15orf39Q6ZRI6 1047 aa13.21□□□□□ -0.29
USP40-210ENST00000454354 CEP120Q8N960 986 aa13.21□□□□□ -0.29
USP40-210ENST00000454354 CMASQ8NFW8 434 aaPredicted RBP13.21□□□□□ -0.29
USP40-210ENST00000454354 RABGGTAQ92696 567 aa13.21□□□□□ -0.29
USP40-210ENST00000454354 RAD54LQ92698 747 aa13.21□□□□□ -0.29
USP40-210ENST00000454354 EDAQ92838 391 aa13.21□□□□□ -0.29
USP40-210ENST00000454354 REEP2Q9BRK0 252 aa13.21□□□□□ -0.29
USP40-210ENST00000454354 CCDC94Q9BW85 323 aaPredicted RBP13.21□□□□□ -0.29
USP40-210ENST00000454354 RHOBTB2Q9BYZ6 727 aa13.21□□□□□ -0.29
USP40-210ENST00000454354 CCSER1Q9C0I3 900 aa13.21□□□□□ -0.29
USP40-210ENST00000454354 TOPORSQ9NS56 1045 aaPredicted RBP13.21□□□□□ -0.29
USP40-210ENST00000454354 LARSQ9P2J5 1176 aaKnown RBP13.21□□□□□ -0.29
USP40-210ENST00000454354 CACNG4Q9UBN1 327 aa13.21□□□□□ -0.29
USP40-210ENST00000454354 DPP7Q9UHL4 492 aa13.21□□□□□ -0.29
USP40-210ENST00000454354 NR2E1Q9Y466 385 aa13.21□□□□□ -0.29
USP40-210ENST00000454354 CLIC4Q9Y696 253 aa13.21□□□□□ -0.29
USP40-210ENST00000454354 NPHP3-ACAD11A0A0J9YXS1 232 aa13.2□□□□□ -0.3
USP40-210ENST00000454354 H0YCG3 227 aa13.2□□□□□ -0.3
USP40-210ENST00000454354 TOM1L1O75674 476 aa13.2□□□□□ -0.3
USP40-210ENST00000454354 GLUD1P00367 558 aa13.2□□□□□ -0.3
USP40-210ENST00000454354 ELAVL2Q12926 359 aaKnown RBP13.2□□□□□ -0.3
USP40-210ENST00000454354 STRN3Q13033 797 aa13.2□□□□□ -0.3
USP40-210ENST00000454354 RTP2Q5QGT7 225 aa13.2□□□□□ -0.3
USP40-210ENST00000454354 ATAT1Q5SQI0 421 aa13.2□□□□□ -0.3
USP40-210ENST00000454354 GPR149Q86SP6 731 aa13.2□□□□□ -0.3
USP40-210ENST00000454354 GPBP1Q86WP2 473 aa13.2□□□□□ -0.3
USP40-210ENST00000454354 HDAC7Q8WUI4 952 aa13.2□□□□□ -0.3
USP40-210ENST00000454354 SNX21Q969T3 373 aa13.2□□□□□ -0.3
USP40-210ENST00000454354 B3GALT6Q96L58 329 aa13.2□□□□□ -0.3
USP40-210ENST00000454354 SNX27Q96L92 541 aa13.2□□□□□ -0.3
USP40-210ENST00000454354 UROC1Q96N76 676 aa13.2□□□□□ -0.3
USP40-210ENST00000454354 MAN1C1Q9NR34 630 aa13.2□□□□□ -0.3
USP40-210ENST00000454354 FBXO2Q9UK22 296 aaPredicted RBP13.2□□□□□ -0.3
USP40-210ENST00000454354 MTMR6Q9Y217 621 aa13.2□□□□□ -0.3
USP40-210ENST00000454354 ARIH1Q9Y4X5 557 aaPredicted RBP13.2□□□□□ -0.3
USP40-210ENST00000454354 WDFY4Q6ZS81 3184 aa13.2□□□□□ -0.3
USP40-210ENST00000454354 TSC2P49815 1807 aa13.19□□□□□ -0.3
USP40-210ENST00000454354 SMIM28A0A1B0GU29 152 aa13.19□□□□□ -0.3
USP40-210ENST00000454354 WEE2P0C1S8 567 aa13.19□□□□□ -0.3
USP40-210ENST00000454354 KCNE1P15382 129 aa13.19□□□□□ -0.3
USP40-210ENST00000454354 YARSP54577 528 aaKnown RBP13.19□□□□□ -0.3
USP40-210ENST00000454354 ZXDAP98168 799 aa13.19□□□□□ -0.3
USP40-210ENST00000454354 CACNB1Q02641 598 aaPredicted RBP13.19□□□□□ -0.3
USP40-210ENST00000454354 MCM6Q14566 821 aa13.19□□□□□ -0.3
USP40-210ENST00000454354 NOLC1Q14978 699 aaKnown RBP eCLIP13.19□□□□□ -0.3
USP40-210ENST00000454354 PTPN21Q16825 1174 aa13.19□□□□□ -0.3
USP40-210ENST00000454354 GLRA4Q5JXX5 417 aa13.19□□□□□ -0.3
USP40-210ENST00000454354 KANK3Q6NY19 840 aa13.19□□□□□ -0.3
USP40-210ENST00000454354 ELMSAN1Q6PJG2 1045 aa13.19□□□□□ -0.3
USP40-210ENST00000454354 TMC5Q6UXY8 1006 aa13.19□□□□□ -0.3
USP40-210ENST00000454354 CYP26C1Q6V0L0 522 aa13.19□□□□□ -0.3
USP40-210ENST00000454354 ZBTB33Q86T24 672 aa13.19□□□□□ -0.3
USP40-210ENST00000454354 FEZF2Q8TBJ5 459 aa13.19□□□□□ -0.3
USP40-210ENST00000454354 HASPINQ8TF76 798 aa13.19□□□□□ -0.3
USP40-210ENST00000454354 RIN2Q8WYP3 895 aaPredicted RBP13.19□□□□□ -0.3
USP40-210ENST00000454354 PIK3R5Q8WYR1 880 aa13.19□□□□□ -0.3
USP40-210ENST00000454354 LARP4BQ92615 738 aaKnown RBP13.19□□□□□ -0.3
USP40-210ENST00000454354 TTPALQ9BTX7 342 aa13.19□□□□□ -0.3
USP40-210ENST00000454354 ZSCAN16Q9H4T2 348 aaPredicted RBP13.19□□□□□ -0.3
USP40-210ENST00000454354 CNTN3Q9P232 1028 aa13.19□□□□□ -0.3
USP40-210ENST00000454354 RAPGEFL1Q9UHV5 662 aa13.19□□□□□ -0.3
USP40-210ENST00000454354 USTQ9Y2C2 406 aa13.19□□□□□ -0.3
USP40-210ENST00000454354 SRPRBQ9Y5M8 271 aaKnown RBP13.19□□□□□ -0.3
USP40-210ENST00000454354 NOTCH4Q99466 2003 aa13.18□□□□□ -0.3
USP40-210ENST00000454354 TCHHQ07283 1943 aa13.18□□□□□ -0.3
USP40-210ENST00000454354 C2CD4DB7Z1M9 353 aa13.18□□□□□ -0.3
USP40-210ENST00000454354 MEFVO15553 781 aaPredicted RBP13.18□□□□□ -0.3
USP40-210ENST00000454354 STX6O43752 255 aa13.18□□□□□ -0.3
USP40-210ENST00000454354 PIGRP01833 764 aa13.18□□□□□ -0.3
USP40-210ENST00000454354 FGFR3P22607 806 aa13.18□□□□□ -0.3
USP40-210ENST00000454354 CLCNKBP51801 687 aa13.18□□□□□ -0.3
USP40-210ENST00000454354 SOX4Q06945 474 aaPredicted RBP13.18□□□□□ -0.3
USP40-210ENST00000454354 MCL1Q07820 350 aa13.18□□□□□ -0.3
USP40-210ENST00000454354 UPP1Q16831 310 aa13.18□□□□□ -0.3
USP40-210ENST00000454354 FAM173BQ6P4H8 233 aa13.18□□□□□ -0.3
USP40-210ENST00000454354 PDXDC1Q6P996 788 aa13.18□□□□□ -0.3
USP40-210ENST00000454354 LILRA6Q6PI73 481 aa13.18□□□□□ -0.3
USP40-210ENST00000454354 CD300LGQ6UXG3 332 aa13.18□□□□□ -0.3
USP40-210ENST00000454354 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.18□□□□□ -0.3
USP40-210ENST00000454354 USP49Q70CQ1 688 aa13.18□□□□□ -0.3
USP40-210ENST00000454354 HAUS6Q7Z4H7 955 aa13.18□□□□□ -0.3
USP40-210ENST00000454354 ZDHHC14Q8IZN3 488 aa13.18□□□□□ -0.3
USP40-210ENST00000454354 RASSF8Q8NHQ8 419 aa13.18□□□□□ -0.3
USP40-210ENST00000454354 LNX1Q8TBB1 728 aaPredicted RBP13.18□□□□□ -0.3
USP40-210ENST00000454354 EPSTI1Q96J88 318 aa13.18□□□□□ -0.3
USP40-210ENST00000454354 ZBTB45Q96K62 511 aaPredicted RBP13.18□□□□□ -0.3
USP40-210ENST00000454354 ACAP3Q96P50 834 aa13.18□□□□□ -0.3
USP40-210ENST00000454354 FIZ1Q96SL8 496 aa13.18□□□□□ -0.3
USP40-210ENST00000454354 TCHPQ9BT92 498 aa13.18□□□□□ -0.3
USP40-210ENST00000454354 PLEKHA4Q9H4M7 779 aa13.18□□□□□ -0.3
USP40-210ENST00000454354 PARVGQ9HBI0 331 aa13.18□□□□□ -0.3
USP40-210ENST00000454354 GOLGA2P5Q9HBQ8 144 aa13.18□□□□□ -0.3
USP40-210ENST00000454354 SLC38A7Q9NVC3 462 aa13.18□□□□□ -0.3
USP40-210ENST00000454354 ANKFY1Q9P2R3 1169 aa13.18□□□□□ -0.3
USP40-210ENST00000454354 STK17AQ9UEE5 414 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms