RNA–Protein interactions for RNA: ENST00000451716.5

COL27A1-202, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL27A1, Length 2,865 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-202ENST00000451716 SLC17A8Q8NDX2 589 aa12.97□□□□□ -0.33
COL27A1-202ENST00000451716 FAM76AQ8TAV0 307 aa12.97□□□□□ -0.33
COL27A1-202ENST00000451716 ZNF516Q92618 1163 aa12.97□□□□□ -0.33
COL27A1-202ENST00000451716 MFSD14AQ96MC6 490 aa12.97□□□□□ -0.33
COL27A1-202ENST00000451716 NT5C1BQ96P26 610 aa12.97□□□□□ -0.33
COL27A1-202ENST00000451716 SGIP1Q9BQI5 828 aa12.97□□□□□ -0.33
COL27A1-202ENST00000451716 TRIM51Q9BSJ1 452 aa12.97□□□□□ -0.33
COL27A1-202ENST00000451716 MYH9P35579 1960 aaKnown RBP12.97□□□□□ -0.33
COL27A1-202ENST00000451716 LRRIQ4A6NIV6 560 aa12.96□□□□□ -0.33
COL27A1-202ENST00000451716 ZNF233A6NK53 670 aa12.96□□□□□ -0.33
COL27A1-202ENST00000451716 ATP2A1O14983 1001 aa12.96□□□□□ -0.33
COL27A1-202ENST00000451716 RTN2O75298 545 aa12.96□□□□□ -0.33
COL27A1-202ENST00000451716 LIG4P49917 911 aa12.96□□□□□ -0.33
COL27A1-202ENST00000451716 NLRP11P59045 1033 aaKnown RBP12.96□□□□□ -0.33
COL27A1-202ENST00000451716 STXBP2Q15833 593 aa12.96□□□□□ -0.33
COL27A1-202ENST00000451716 C2CD6Q53TS8 623 aa12.96□□□□□ -0.33
COL27A1-202ENST00000451716 XKR3Q5GH77 459 aa12.96□□□□□ -0.33
COL27A1-202ENST00000451716 ZBTB41Q5SVQ8 909 aa12.96□□□□□ -0.33
COL27A1-202ENST00000451716 SPOPLQ6IQ16 392 aa12.96□□□□□ -0.33
COL27A1-202ENST00000451716 GIMAP7Q8NHV1 300 aa12.96□□□□□ -0.33
COL27A1-202ENST00000451716 ASAP3Q8TDY4 903 aa12.96□□□□□ -0.33
COL27A1-202ENST00000451716 CDHR1Q96JP9 859 aa12.96□□□□□ -0.33
COL27A1-202ENST00000451716 FBXL18Q96ME1 805 aa12.96□□□□□ -0.33
COL27A1-202ENST00000451716 SH3GL2Q99962 352 aa12.96□□□□□ -0.33
COL27A1-202ENST00000451716 ZNF302Q9NR11 478 aa12.96□□□□□ -0.33
COL27A1-202ENST00000451716 ARHGAP28Q9P2N2 729 aa12.96□□□□□ -0.33
COL27A1-202ENST00000451716 SNCAIPQ9Y6H5 919 aa12.96□□□□□ -0.33
COL27A1-202ENST00000451716 NFASCO94856 1347 aa12.96□□□□□ -0.33
COL27A1-202ENST00000451716 DDNO94850 711 aaPredicted RBP12.96□□□□□ -0.34
COL27A1-202ENST00000451716 COMTP21964 271 aa12.96□□□□□ -0.34
COL27A1-202ENST00000451716 SSTR3P32745 418 aaPredicted RBP12.96□□□□□ -0.34
COL27A1-202ENST00000451716 GPC3P51654 580 aa12.96□□□□□ -0.34
COL27A1-202ENST00000451716 MFSD4BQ5TF39 518 aa12.96□□□□□ -0.34
COL27A1-202ENST00000451716 LEKR1Q6ZMV7 388 aa12.96□□□□□ -0.34
COL27A1-202ENST00000451716 RHOT2Q8IXI1 618 aa12.96□□□□□ -0.34
COL27A1-202ENST00000451716 IQCKQ8N0W5 287 aa12.96□□□□□ -0.34
COL27A1-202ENST00000451716 GLG1Q92896 1179 aa12.96□□□□□ -0.34
COL27A1-202ENST00000451716 PAGR1Q9BTK6 254 aa12.96□□□□□ -0.34
COL27A1-202ENST00000451716 HAPLN2Q9GZV7 340 aa12.96□□□□□ -0.34
COL27A1-202ENST00000451716 ANKFY1Q9P2R3 1169 aa12.96□□□□□ -0.34
COL27A1-202ENST00000451716 ZNF232Q9UNY5 417 aa12.96□□□□□ -0.34
COL27A1-202ENST00000451716 SYNGAP1Q96PV0 1343 aa12.96□□□□□ -0.34
COL27A1-202ENST00000451716 ADM5C9JUS6 153 aa12.95□□□□□ -0.34
COL27A1-202ENST00000451716 HARSP12081 509 aaKnown RBP12.95□□□□□ -0.34
COL27A1-202ENST00000451716 TNNI1P19237 187 aa12.95□□□□□ -0.34
COL27A1-202ENST00000451716 BRDTQ58F21 947 aaPredicted RBP12.95□□□□□ -0.34
COL27A1-202ENST00000451716 ALS2CLQ60I27 953 aa12.95□□□□□ -0.34
COL27A1-202ENST00000451716 SCARA3Q6AZY7 606 aa12.95□□□□□ -0.34
COL27A1-202ENST00000451716 NCAPG2Q86XI2 1143 aa12.95□□□□□ -0.34
COL27A1-202ENST00000451716 OR2W6PQ8NHA6 318 aa12.95□□□□□ -0.34
COL27A1-202ENST00000451716 C17orf75Q9HAS0 396 aa12.95□□□□□ -0.34
COL27A1-202ENST00000451716 COQ4Q9Y3A0 265 aa12.95□□□□□ -0.34
COL27A1-202ENST00000451716 PTPRJQ12913 1337 aa12.95□□□□□ -0.34
COL27A1-202ENST00000451716 ECM2O94769 699 aaPredicted RBP12.95□□□□□ -0.34
COL27A1-202ENST00000451716 EDN1P05305 212 aa12.95□□□□□ -0.34
COL27A1-202ENST00000451716 NNTQ13423 1086 aa12.95□□□□□ -0.34
COL27A1-202ENST00000451716 DRP2Q13474 957 aa12.95□□□□□ -0.34
COL27A1-202ENST00000451716 LLGL2Q6P1M3 1020 aa12.95□□□□□ -0.34
COL27A1-202ENST00000451716 GADL1Q6ZQY3 521 aa12.95□□□□□ -0.34
COL27A1-202ENST00000451716 TMC2Q8TDI7 906 aa12.95□□□□□ -0.34
COL27A1-202ENST00000451716 ZNF653Q96CK0 615 aa12.95□□□□□ -0.34
COL27A1-202ENST00000451716 HVCN1Q96D96 273 aa12.95□□□□□ -0.34
COL27A1-202ENST00000451716 NUP85Q9BW27 656 aa12.95□□□□□ -0.34
COL27A1-202ENST00000451716 CCDC188H7C350 402 aa12.95□□□□□ -0.34
COL27A1-202ENST00000451716 DKC1O60832 514 aaKnown RBP eCLIP12.95□□□□□ -0.34
COL27A1-202ENST00000451716 OATP04181 439 aa12.95□□□□□ -0.34
COL27A1-202ENST00000451716 GLRA2P23416 452 aa12.95□□□□□ -0.34
COL27A1-202ENST00000451716 PDE6CP51160 858 aa12.95□□□□□ -0.34
COL27A1-202ENST00000451716 LRRC31Q6UY01 552 aa12.95□□□□□ -0.34
COL27A1-202ENST00000451716 MOB2Q70IA6 237 aa12.95□□□□□ -0.34
COL27A1-202ENST00000451716 TARS2Q9BW92 718 aaKnown RBP12.95□□□□□ -0.34
COL27A1-202ENST00000451716 TRPC6Q9Y210 931 aa12.95□□□□□ -0.34
COL27A1-202ENST00000451716 DAAM1Q9Y4D1 1078 aa12.95□□□□□ -0.34
COL27A1-202ENST00000451716 PMM2O15305 246 aa12.94□□□□□ -0.34
COL27A1-202ENST00000451716 OPA1O60313 960 aa12.94□□□□□ -0.34
COL27A1-202ENST00000451716 UBA1P22314 1058 aaKnown RBP12.94□□□□□ -0.34
COL27A1-202ENST00000451716 ALDH5A1P51649 535 aaPredicted RBP12.94□□□□□ -0.34
COL27A1-202ENST00000451716 MKRN4PQ13434 485 aaPredicted RBP12.94□□□□□ -0.34
COL27A1-202ENST00000451716 MAATS1Q7Z4T9 603 aa12.94□□□□□ -0.34
COL27A1-202ENST00000451716 MICALL1Q8N3F8 863 aa12.94□□□□□ -0.34
COL27A1-202ENST00000451716 ATL2Q8NHH9 583 aa12.94□□□□□ -0.34
COL27A1-202ENST00000451716 ZNF564Q8TBZ8 553 aaPredicted RBP12.94□□□□□ -0.34
COL27A1-202ENST00000451716 WHAMMQ8TF30 809 aa12.94□□□□□ -0.34
COL27A1-202ENST00000451716 DDX1Q92499 740 aaKnown RBP12.94□□□□□ -0.34
COL27A1-202ENST00000451716 TRIM7Q9C029 511 aa12.94□□□□□ -0.34
COL27A1-202ENST00000451716 CARD9Q9H257 536 aa12.94□□□□□ -0.34
COL27A1-202ENST00000451716 PLAAQ9Y263 795 aa12.94□□□□□ -0.34
COL27A1-202ENST00000451716 MAFBQ9Y5Q3 323 aaPredicted RBP12.94□□□□□ -0.34
COL27A1-202ENST00000451716 TCRBV7S2A1N4TA0A589 114 aa12.94□□□□□ -0.34
COL27A1-202ENST00000451716 TTLL13PA6NNM8 815 aa12.94□□□□□ -0.34
COL27A1-202ENST00000451716 ANKRD65E5RJM6 399 aa12.94□□□□□ -0.34
COL27A1-202ENST00000451716 ATP1A2P50993 1020 aa12.94□□□□□ -0.34
COL27A1-202ENST00000451716 CDR2Q01850 454 aa12.94□□□□□ -0.34
COL27A1-202ENST00000451716 STRN3Q13033 797 aa12.94□□□□□ -0.34
COL27A1-202ENST00000451716 BIRC3Q13489 604 aa12.94□□□□□ -0.34
COL27A1-202ENST00000451716 LBX2Q6XYB7 198 aa12.94□□□□□ -0.34
COL27A1-202ENST00000451716 ZDHHC14Q8IZN3 488 aa12.94□□□□□ -0.34
COL27A1-202ENST00000451716 GPC2Q8N158 579 aa12.94□□□□□ -0.34
COL27A1-202ENST00000451716 CCDC26Q8TAB7 109 aa12.94□□□□□ -0.34
COL27A1-202ENST00000451716 OTUD5Q96G74 571 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms