RNA–Protein interactions for RNA: ENST00000449684.6

LIMS1-210, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 492 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-210ENST00000449684 CREMQ03060 361 aa16.99■□□□□ 0.31
LIMS1-210ENST00000449684 PTPAQ15257 358 aa16.99■□□□□ 0.31
LIMS1-210ENST00000449684 KIAA0319Q5VV43 1072 aa16.99■□□□□ 0.31
LIMS1-210ENST00000449684 RRAGBQ5VZM2 374 aa16.99■□□□□ 0.31
LIMS1-210ENST00000449684 TMC5Q6UXY8 1006 aa16.99■□□□□ 0.31
LIMS1-210ENST00000449684 TAS1R3Q7RTX0 852 aa16.99■□□□□ 0.31
LIMS1-210ENST00000449684 HAUS6Q7Z4H7 955 aa16.99■□□□□ 0.31
LIMS1-210ENST00000449684 CEP120Q8N960 986 aa16.99■□□□□ 0.31
LIMS1-210ENST00000449684 KRI1Q8N9T8 703 aaKnown RBP16.99■□□□□ 0.31
LIMS1-210ENST00000449684 EPSTI1Q96J88 318 aa16.99■□□□□ 0.31
LIMS1-210ENST00000449684 ZNF396Q96N95 335 aaPredicted RBP16.99■□□□□ 0.31
LIMS1-210ENST00000449684 REEP2Q9BRK0 252 aa16.99■□□□□ 0.31
LIMS1-210ENST00000449684 PAAF1Q9BRP4 392 aa16.99■□□□□ 0.31
LIMS1-210ENST00000449684 SFXN1Q9H9B4 322 aa16.99■□□□□ 0.31
LIMS1-210ENST00000449684 PARVGQ9HBI0 331 aa16.99■□□□□ 0.31
LIMS1-210ENST00000449684 BLOC1S4Q9NUP1 217 aa16.99■□□□□ 0.31
LIMS1-210ENST00000449684 LOC730098B7Z3J9 87 aa16.98■□□□□ 0.31
LIMS1-210ENST00000449684 K7ENM7 598 aa16.98■□□□□ 0.31
LIMS1-210ENST00000449684 CLDN3O15551 220 aa16.98■□□□□ 0.31
LIMS1-210ENST00000449684 GPR37L1O60883 481 aa16.98■□□□□ 0.31
LIMS1-210ENST00000449684 LILRB3O75022 631 aa16.98■□□□□ 0.31
LIMS1-210ENST00000449684 KIF4AO95239 1232 aa16.98■□□□□ 0.31
LIMS1-210ENST00000449684 GLUD1P00367 558 aa16.98■□□□□ 0.31
LIMS1-210ENST00000449684 WEE2P0C1S8 567 aa16.98■□□□□ 0.31
LIMS1-210ENST00000449684 COL9A1P20849 921 aa16.98■□□□□ 0.31
LIMS1-210ENST00000449684 LIG4P49917 911 aa16.98■□□□□ 0.31
LIMS1-210ENST00000449684 ELAVL2Q12926 359 aaKnown RBP16.98■□□□□ 0.31
LIMS1-210ENST00000449684 NOLC1Q14978 699 aaKnown RBP eCLIP16.98■□□□□ 0.31
LIMS1-210ENST00000449684 STK38Q15208 465 aa16.98■□□□□ 0.31
LIMS1-210ENST00000449684 FAM171A1Q5VUB5 890 aa16.98■□□□□ 0.31
LIMS1-210ENST00000449684 ZPBP2Q6X784 338 aa16.98■□□□□ 0.31
LIMS1-210ENST00000449684 PALB2Q86YC2 1186 aa16.98■□□□□ 0.31
LIMS1-210ENST00000449684 GLYCTKQ8IVS8 523 aa16.98■□□□□ 0.31
LIMS1-210ENST00000449684 RNF168Q8IYW5 571 aaPredicted RBP16.98■□□□□ 0.31
LIMS1-210ENST00000449684 ZBTB45Q96K62 511 aaPredicted RBP16.98■□□□□ 0.31
LIMS1-210ENST00000449684 B3GALT6Q96L58 329 aa16.98■□□□□ 0.31
LIMS1-210ENST00000449684 UROC1Q96N76 676 aa16.98■□□□□ 0.31
LIMS1-210ENST00000449684 CLIC6Q96NY7 704 aa16.98■□□□□ 0.31
LIMS1-210ENST00000449684 USP28Q96RU2 1077 aa16.98■□□□□ 0.31
LIMS1-210ENST00000449684 TTPALQ9BTX7 342 aa16.98■□□□□ 0.31
LIMS1-210ENST00000449684 PTPRHQ9HD43 1115 aa16.98■□□□□ 0.31
LIMS1-210ENST00000449684 CHST7Q9NS84 486 aa16.98■□□□□ 0.31
LIMS1-210ENST00000449684 SLC38A7Q9NVC3 462 aa16.98■□□□□ 0.31
LIMS1-210ENST00000449684 MUTYHQ9UIF7 546 aa16.98■□□□□ 0.31
LIMS1-210ENST00000449684 FBXO2Q9UK22 296 aaPredicted RBP16.98■□□□□ 0.31
LIMS1-210ENST00000449684 C5orf42Q9H799 3197 aa16.98■□□□□ 0.31
LIMS1-210ENST00000449684 SMIM28A0A1B0GU29 152 aa16.97■□□□□ 0.31
LIMS1-210ENST00000449684 TRAPPC3O43617 180 aa16.97■□□□□ 0.31
LIMS1-210ENST00000449684 TRAK2O60296 914 aa16.97■□□□□ 0.31
LIMS1-210ENST00000449684 B3GAT3O94766 335 aa16.97■□□□□ 0.31
LIMS1-210ENST00000449684 PDIA4P13667 645 aaKnown RBP16.97■□□□□ 0.31
LIMS1-210ENST00000449684 SCP2P22307 547 aa16.97■□□□□ 0.31
LIMS1-210ENST00000449684 ABCD1P33897 745 aa16.97■□□□□ 0.31
LIMS1-210ENST00000449684 NCKAP1LP55160 1127 aa16.97■□□□□ 0.31
LIMS1-210ENST00000449684 FOXD4L5Q5VV16 416 aaPredicted RBP16.97■□□□□ 0.31
LIMS1-210ENST00000449684 FOXD4L4Q8WXT5 416 aaPredicted RBP16.97■□□□□ 0.31
LIMS1-210ENST00000449684 LRFN3Q9BTN0 628 aa16.97■□□□□ 0.31
LIMS1-210ENST00000449684 CXCL16Q9H2A7 254 aa16.97■□□□□ 0.31
LIMS1-210ENST00000449684 POMKQ9H5K3 350 aa16.97■□□□□ 0.31
LIMS1-210ENST00000449684 RXFP1Q9HBX9 757 aa16.97■□□□□ 0.31
LIMS1-210ENST00000449684 MAN1C1Q9NR34 630 aa16.97■□□□□ 0.31
LIMS1-210ENST00000449684 STK17AQ9UEE5 414 aa16.97■□□□□ 0.31
LIMS1-210ENST00000449684 HNRNPDLO14979 420 aaKnown RBP16.96■□□□□ 0.31
LIMS1-210ENST00000449684 MYBP10242 640 aa16.96■□□□□ 0.31
LIMS1-210ENST00000449684 PROZP22891 400 aa16.96■□□□□ 0.31
LIMS1-210ENST00000449684 CLCNKBP51801 687 aa16.96■□□□□ 0.31
LIMS1-210ENST00000449684 SLC39A14Q15043 492 aa16.96■□□□□ 0.31
LIMS1-210ENST00000449684 KANK3Q6NY19 840 aa16.96■□□□□ 0.31
LIMS1-210ENST00000449684 PDXDC1Q6P996 788 aa16.96■□□□□ 0.31
LIMS1-210ENST00000449684 DCLRE1AQ6PJP8 1040 aa16.96■□□□□ 0.31
LIMS1-210ENST00000449684 CCDC73Q6ZRK6 1079 aa16.96■□□□□ 0.31
LIMS1-210ENST00000449684 USP49Q70CQ1 688 aa16.96■□□□□ 0.31
LIMS1-210ENST00000449684 SV2BQ7L1I2 683 aa16.96■□□□□ 0.31
LIMS1-210ENST00000449684 GPR65Q8IYL9 337 aa16.96■□□□□ 0.31
LIMS1-210ENST00000449684 DDX27Q96GQ7 796 aaKnown RBP16.96■□□□□ 0.31
LIMS1-210ENST00000449684 PPP1R10Q96QC0 940 aaKnown RBP16.96■□□□□ 0.31
LIMS1-210ENST00000449684 FNIP2Q9P278 1114 aa16.96■□□□□ 0.31
LIMS1-210ENST00000449684 CDH22Q9UJ99 828 aa16.96■□□□□ 0.31
LIMS1-210ENST00000449684 TBX20Q9UMR3 447 aa16.96■□□□□ 0.31
LIMS1-210ENST00000449684 BRD1O95696 1058 aa16.95■□□□□ 0.3
LIMS1-210ENST00000449684 EFEMP2O95967 443 aa16.95■□□□□ 0.3
LIMS1-210ENST00000449684 SPATA31D3P0C874 917 aa16.95■□□□□ 0.3
LIMS1-210ENST00000449684 STAT6P42226 847 aa16.95■□□□□ 0.3
LIMS1-210ENST00000449684 NAB2Q15742 525 aa16.95■□□□□ 0.3
LIMS1-210ENST00000449684 HERC4Q5GLZ8 1057 aaPredicted RBP16.95■□□□□ 0.3
LIMS1-210ENST00000449684 PRSS55Q6UWB4 352 aaPredicted RBP16.95■□□□□ 0.3
LIMS1-210ENST00000449684 SPATA31D4Q6ZUB0 917 aa16.95■□□□□ 0.3
LIMS1-210ENST00000449684 DYMQ7RTS9 669 aa16.95■□□□□ 0.3
LIMS1-210ENST00000449684 SPRYD3Q8NCJ5 442 aa16.95■□□□□ 0.3
LIMS1-210ENST00000449684 LRRC15Q8TF66 581 aa16.95■□□□□ 0.3
LIMS1-210ENST00000449684 SNX27Q96L92 541 aa16.95■□□□□ 0.3
LIMS1-210ENST00000449684 PANK2Q9BZ23 570 aa16.95■□□□□ 0.3
LIMS1-210ENST00000449684 PIDD1Q9HB75 910 aa16.95■□□□□ 0.3
LIMS1-210ENST00000449684 GOLGA2P5Q9HBQ8 144 aa16.95■□□□□ 0.3
LIMS1-210ENST00000449684 CCDC195A0A1B0GUA6 201 aa16.94■□□□□ 0.3
LIMS1-210ENST00000449684 PRR33A8MZF0 331 aa16.94■□□□□ 0.3
LIMS1-210ENST00000449684 RPL17P18621 184 aaKnown RBP16.94■□□□□ 0.3
LIMS1-210ENST00000449684 ZNF131P52739 623 aa16.94■□□□□ 0.3
LIMS1-210ENST00000449684 MCL1Q07820 350 aa16.94■□□□□ 0.3
LIMS1-210ENST00000449684 PSMD5Q16401 504 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms