RNA–Protein interactions for RNA: ENST00000439160.6

TCOF1-205, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,644 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-205ENST00000439160 ASAP2O43150 1006 aa13.06□□□□□ -0.32
TCOF1-205ENST00000439160 BCAR1P56945 870 aa13.06□□□□□ -0.32
TCOF1-205ENST00000439160 LAMC2Q13753 1193 aa13.06□□□□□ -0.32
TCOF1-205ENST00000439160 MUM1L1Q5H9M0 696 aa13.06□□□□□ -0.32
TCOF1-205ENST00000439160 BBS5Q8N3I7 341 aa13.06□□□□□ -0.32
TCOF1-205ENST00000439160 ANKRD7Q92527 254 aa13.06□□□□□ -0.32
TCOF1-205ENST00000439160 DNAJC7Q99615 494 aa13.06□□□□□ -0.32
TCOF1-205ENST00000439160 PRMT7Q9NVM4 692 aaPredicted RBP13.06□□□□□ -0.32
TCOF1-205ENST00000439160 RARRES1P49788 294 aa13.06□□□□□ -0.32
TCOF1-205ENST00000439160 TSPY1Q01534 308 aa13.06□□□□□ -0.32
TCOF1-205ENST00000439160 GPS1Q13098 491 aa13.06□□□□□ -0.32
TCOF1-205ENST00000439160 NME3Q13232 169 aa13.06□□□□□ -0.32
TCOF1-205ENST00000439160 PPFIBP2Q8ND30 876 aa13.06□□□□□ -0.32
TCOF1-205ENST00000439160 RBM12Q9NTZ6 932 aaKnown RBP13.06□□□□□ -0.32
TCOF1-205ENST00000439160 LCP1P13796 627 aa13.06□□□□□ -0.32
TCOF1-205ENST00000439160 GARSP41250 739 aaKnown RBP13.06□□□□□ -0.32
TCOF1-205ENST00000439160 HERVK_113P62684 666 aa13.06□□□□□ -0.32
TCOF1-205ENST00000439160 CNTN2Q02246 1040 aa13.06□□□□□ -0.32
TCOF1-205ENST00000439160 ZC3H18Q86VM9 953 aaKnown RBP13.06□□□□□ -0.32
TCOF1-205ENST00000439160 OPTNQ96CV9 577 aa13.06□□□□□ -0.32
TCOF1-205ENST00000439160 ZNF560Q96MR9 790 aa13.06□□□□□ -0.32
TCOF1-205ENST00000439160 SLITRK6Q9H5Y7 841 aa13.06□□□□□ -0.32
TCOF1-205ENST00000439160 EHD2Q9NZN4 543 aa13.06□□□□□ -0.32
TCOF1-205ENST00000439160 UVRAGQ9P2Y5 699 aa13.06□□□□□ -0.32
TCOF1-205ENST00000439160 ALG6Q9Y672 507 aa13.06□□□□□ -0.32
TCOF1-205ENST00000439160 ELF1P32519 619 aa13.05□□□□□ -0.32
TCOF1-205ENST00000439160 C6orf118Q5T5N4 469 aa13.05□□□□□ -0.32
TCOF1-205ENST00000439160 NXNQ6DKJ4 435 aa13.05□□□□□ -0.32
TCOF1-205ENST00000439160 PCGF5Q86SE9 256 aa13.05□□□□□ -0.32
TCOF1-205ENST00000439160 C4orf19Q8IY42 314 aa13.05□□□□□ -0.32
TCOF1-205ENST00000439160 TTC39CQ8N584 583 aa13.05□□□□□ -0.32
TCOF1-205ENST00000439160 RAET1EQ8TD07 263 aa13.05□□□□□ -0.32
TCOF1-205ENST00000439160 COG1Q8WTW3 980 aa13.05□□□□□ -0.32
TCOF1-205ENST00000439160 MTMR9Q96QG7 549 aa13.05□□□□□ -0.32
TCOF1-205ENST00000439160 FAM49BQ9NUQ9 324 aa13.05□□□□□ -0.32
TCOF1-205ENST00000439160 STAP1Q9ULZ2 295 aa13.05□□□□□ -0.32
TCOF1-205ENST00000439160 HMGB1P1B2RPK0 211 aaPredicted RBP13.05□□□□□ -0.32
TCOF1-205ENST00000439160 TTI1O43156 1089 aa13.05□□□□□ -0.32
TCOF1-205ENST00000439160 CSDE1O75534 798 aaKnown RBP13.05□□□□□ -0.32
TCOF1-205ENST00000439160 GRAP2O75791 330 aa13.05□□□□□ -0.32
TCOF1-205ENST00000439160 SRGAP2BP0DMP2 458 aa13.05□□□□□ -0.32
TCOF1-205ENST00000439160 FUT2Q10981 343 aa13.05□□□□□ -0.32
TCOF1-205ENST00000439160 C2CD6Q53TS8 623 aa13.05□□□□□ -0.32
TCOF1-205ENST00000439160 MORC4Q8TE76 937 aa13.05□□□□□ -0.32
TCOF1-205ENST00000439160 DUSP9Q99956 384 aaKnown RBP13.05□□□□□ -0.32
TCOF1-205ENST00000439160 KLC2Q9H0B6 622 aa13.05□□□□□ -0.32
TCOF1-205ENST00000439160 PFDN4Q9NQP4 134 aa13.05□□□□□ -0.32
TCOF1-205ENST00000439160 KLHL8Q9P2G9 620 aaPredicted RBP13.05□□□□□ -0.32
TCOF1-205ENST00000439160 P4HA2O15460 535 aa13.05□□□□□ -0.32
TCOF1-205ENST00000439160 SUN1O94901 812 aa13.05□□□□□ -0.32
TCOF1-205ENST00000439160 COMTP21964 271 aa13.05□□□□□ -0.32
TCOF1-205ENST00000439160 BMP6P22004 513 aa13.05□□□□□ -0.32
TCOF1-205ENST00000439160 HOXD10P28358 340 aa13.05□□□□□ -0.32
TCOF1-205ENST00000439160 SEPT6Q14141 434 aa13.05□□□□□ -0.32
TCOF1-205ENST00000439160 DGKDQ16760 1214 aa13.05□□□□□ -0.32
TCOF1-205ENST00000439160 HVCN1Q96D96 273 aa13.05□□□□□ -0.32
TCOF1-205ENST00000439160 CALR3Q96L12 384 aaKnown RBP13.05□□□□□ -0.32
TCOF1-205ENST00000439160 P2RX7Q99572 595 aaKnown RBP13.05□□□□□ -0.32
TCOF1-205ENST00000439160 USP20Q9Y2K6 914 aa13.05□□□□□ -0.32
TCOF1-205ENST00000439160 TYW5A2RUC4 315 aaKnown RBP13.05□□□□□ -0.32
TCOF1-205ENST00000439160 MEIS2O14770 477 aa13.05□□□□□ -0.32
TCOF1-205ENST00000439160 ARL4CP56559 192 aa13.05□□□□□ -0.32
TCOF1-205ENST00000439160 IRX4P78413 519 aa13.05□□□□□ -0.32
TCOF1-205ENST00000439160 ADCY2Q08462 1091 aa13.05□□□□□ -0.32
TCOF1-205ENST00000439160 BZW1Q7L1Q6 419 aaKnown RBP13.05□□□□□ -0.32
TCOF1-205ENST00000439160 DNAAF5Q86Y56 855 aa13.05□□□□□ -0.32
TCOF1-205ENST00000439160 DCLK2Q8N568 766 aa13.05□□□□□ -0.32
TCOF1-205ENST00000439160 CCDC197Q8NCU1 140 aa13.05□□□□□ -0.32
TCOF1-205ENST00000439160 GLIS3Q8NEA6 775 aa13.05□□□□□ -0.32
TCOF1-205ENST00000439160 MCEEQ96PE7 176 aa13.05□□□□□ -0.32
TCOF1-205ENST00000439160 ATRNO75882 1429 aa13.04□□□□□ -0.32
TCOF1-205ENST00000439160 PDGFRAP16234 1089 aa13.04□□□□□ -0.32
TCOF1-205ENST00000439160 MUTP22033 750 aa13.04□□□□□ -0.32
TCOF1-205ENST00000439160 MMP14P50281 582 aa13.04□□□□□ -0.32
TCOF1-205ENST00000439160 SNRPFP62306 86 aaKnown RBP13.04□□□□□ -0.32
TCOF1-205ENST00000439160 RYBPQ8N488 228 aaPredicted RBP13.04□□□□□ -0.32
TCOF1-205ENST00000439160 GTF3C2Q8WUA4 911 aaPredicted RBP13.04□□□□□ -0.32
TCOF1-205ENST00000439160 SYN2Q92777 582 aaPredicted RBP13.04□□□□□ -0.32
TCOF1-205ENST00000439160 HAS1Q92839 578 aa13.04□□□□□ -0.32
TCOF1-205ENST00000439160 TRIM51Q9BSJ1 452 aa13.04□□□□□ -0.32
TCOF1-205ENST00000439160 SIK2Q9H0K1 926 aa13.04□□□□□ -0.32
TCOF1-205ENST00000439160 ZFYVE28Q9HCC9 887 aa13.04□□□□□ -0.32
TCOF1-205ENST00000439160 OLFML3Q9NRN5 406 aa13.04□□□□□ -0.32
TCOF1-205ENST00000439160 FBXL5Q9UKA1 691 aa13.04□□□□□ -0.32
TCOF1-205ENST00000439160 CAPN6Q9Y6Q1 641 aa13.04□□□□□ -0.32
TCOF1-205ENST00000439160 KRT14P02533 472 aa13.04□□□□□ -0.32
TCOF1-205ENST00000439160 TMEM253P0C7T8 217 aa13.04□□□□□ -0.32
TCOF1-205ENST00000439160 GTF2H1P32780 548 aa13.04□□□□□ -0.32
TCOF1-205ENST00000439160 PMS2P54278 862 aa13.04□□□□□ -0.32
TCOF1-205ENST00000439160 MDM2Q00987 491 aaPredicted RBP13.04□□□□□ -0.32
TCOF1-205ENST00000439160 KYAT1Q16773 422 aa13.04□□□□□ -0.32
TCOF1-205ENST00000439160 TMEM119Q4V9L6 283 aa13.04□□□□□ -0.32
TCOF1-205ENST00000439160 SH3RF1Q7Z6J0 888 aa13.04□□□□□ -0.32
TCOF1-205ENST00000439160 GPC2Q8N158 579 aa13.04□□□□□ -0.32
TCOF1-205ENST00000439160 MCUQ8NE86 351 aa13.04□□□□□ -0.32
TCOF1-205ENST00000439160 FAM118BQ9BPY3 351 aa13.04□□□□□ -0.32
TCOF1-205ENST00000439160 NIF3L1Q9GZT8 377 aa13.04□□□□□ -0.32
TCOF1-205ENST00000439160 THAP2Q9H0W7 228 aa13.04□□□□□ -0.32
TCOF1-205ENST00000439160 EFCC1Q9HA90 598 aa13.04□□□□□ -0.32
TCOF1-205ENST00000439160 ARHGAP20Q9P2F6 1191 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms