RNA–Protein interactions for RNA: ENST00000438395.5

VPS50-204, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 3

Gene VPS50, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-204ENST00000438395 ZNF775Q96BV0 537 aaPredicted RBP8.6□□□□□ -1.03
VPS50-204ENST00000438395 CPB2Q96IY4 423 aa8.6□□□□□ -1.03
VPS50-204ENST00000438395 KLHL5Q96PQ7 755 aa8.6□□□□□ -1.03
VPS50-204ENST00000438395 EIF2AQ9BY44 585 aaKnown RBP8.6□□□□□ -1.03
VPS50-204ENST00000438395 NXF3Q9H4D5 531 aaKnown RBP8.6□□□□□ -1.03
VPS50-204ENST00000438395 PIDD1Q9HB75 910 aa8.6□□□□□ -1.03
VPS50-204ENST00000438395 MAN1C1Q9NR34 630 aa8.6□□□□□ -1.03
VPS50-204ENST00000438395 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP8.6□□□□□ -1.03
VPS50-204ENST00000438395 PARP2Q9UGN5 583 aa8.6□□□□□ -1.03
VPS50-204ENST00000438395 GIT1Q9Y2X7 761 aa8.6□□□□□ -1.03
VPS50-204ENST00000438395 WDFY4Q6ZS81 3184 aa8.6□□□□□ -1.03
VPS50-204ENST00000438395 SF3B1O75533 1304 aaKnown RBP eCLIP8.59□□□□□ -1.03
VPS50-204ENST00000438395 ARHGEF35A5YM69 484 aa8.59□□□□□ -1.03
VPS50-204ENST00000438395 ZBTB39O15060 712 aa8.59□□□□□ -1.03
VPS50-204ENST00000438395 AXIN1O15169 862 aa8.59□□□□□ -1.03
VPS50-204ENST00000438395 B4GALT3O60512 393 aa8.59□□□□□ -1.03
VPS50-204ENST00000438395 SLITRK3O94933 977 aa8.59□□□□□ -1.03
VPS50-204ENST00000438395 NPTXRO95502 500 aa8.59□□□□□ -1.03
VPS50-204ENST00000438395 PDGFBP01127 241 aaPredicted RBP8.59□□□□□ -1.03
VPS50-204ENST00000438395 LIG1P18858 919 aa8.59□□□□□ -1.03
VPS50-204ENST00000438395 MCM7P33993 719 aa8.59□□□□□ -1.03
VPS50-204ENST00000438395 NEK4P51957 841 aa8.59□□□□□ -1.03
VPS50-204ENST00000438395 WNT7BP56706 349 aa8.59□□□□□ -1.03
VPS50-204ENST00000438395 MBTD1Q05BQ5 628 aa8.59□□□□□ -1.03
VPS50-204ENST00000438395 POU5F1BQ06416 359 aa8.59□□□□□ -1.03
VPS50-204ENST00000438395 SPIRE1Q08AE8 756 aa8.59□□□□□ -1.03
VPS50-204ENST00000438395 GRIK3Q13003 919 aa8.59□□□□□ -1.03
VPS50-204ENST00000438395 TDGQ13569 410 aa8.59□□□□□ -1.03
VPS50-204ENST00000438395 QPCTQ16769 361 aa8.59□□□□□ -1.03
VPS50-204ENST00000438395 LIN9Q5TKA1 542 aa8.59□□□□□ -1.03
VPS50-204ENST00000438395 KANK3Q6NY19 840 aa8.59□□□□□ -1.03
VPS50-204ENST00000438395 SLC27A1Q6PCB7 646 aa8.59□□□□□ -1.03
VPS50-204ENST00000438395 CYP26C1Q6V0L0 522 aa8.59□□□□□ -1.03
VPS50-204ENST00000438395 APBB1IPQ7Z5R6 666 aaPredicted RBP8.59□□□□□ -1.03
VPS50-204ENST00000438395 SMG8Q8ND04 991 aaKnown RBP8.59□□□□□ -1.03
VPS50-204ENST00000438395 FLCNQ8NFG4 579 aa8.59□□□□□ -1.03
VPS50-204ENST00000438395 CMASQ8NFW8 434 aaPredicted RBP8.59□□□□□ -1.03
VPS50-204ENST00000438395 DEPTORQ8TB45 409 aa8.59□□□□□ -1.03
VPS50-204ENST00000438395 ASAP3Q8TDY4 903 aa8.59□□□□□ -1.03
VPS50-204ENST00000438395 PIGOQ8TEQ8 1089 aa8.59□□□□□ -1.03
VPS50-204ENST00000438395 SMG7Q92540 1137 aaKnown RBP8.59□□□□□ -1.03
VPS50-204ENST00000438395 BAP1Q92560 729 aa8.59□□□□□ -1.03
VPS50-204ENST00000438395 HPS1Q92902 700 aa8.59□□□□□ -1.03
VPS50-204ENST00000438395 ZFP42Q96MM3 310 aa8.59□□□□□ -1.03
VPS50-204ENST00000438395 ADPGKQ9BRR6 497 aa8.59□□□□□ -1.03
VPS50-204ENST00000438395 VN1R3Q9BXE9 311 aa8.59□□□□□ -1.03
VPS50-204ENST00000438395 C2orf40Q9H1Z8 148 aa8.59□□□□□ -1.03
VPS50-204ENST00000438395 XPNPEP1Q9NQW7 623 aa8.59□□□□□ -1.03
VPS50-204ENST00000438395 FAM86C1Q9NVL1 165 aa8.59□□□□□ -1.03
VPS50-204ENST00000438395 EVA1BQ9NVM1 165 aa8.59□□□□□ -1.03
VPS50-204ENST00000438395 HES2Q9Y543 173 aa8.59□□□□□ -1.03
VPS50-204ENST00000438395 CLUHO75153 1309 aa8.58□□□□□ -1.04
VPS50-204ENST00000438395 BTBD18B2RXH4 712 aa8.58□□□□□ -1.04
VPS50-204ENST00000438395 H0Y858 1186 aa8.58□□□□□ -1.04
VPS50-204ENST00000438395 INPPL1O15357 1258 aa8.58□□□□□ -1.04
VPS50-204ENST00000438395 TEX28O15482 410 aa8.58□□□□□ -1.04
VPS50-204ENST00000438395 B4GALT5O43286 388 aa8.58□□□□□ -1.04
VPS50-204ENST00000438395 DTNBO60941 627 aa8.58□□□□□ -1.04
VPS50-204ENST00000438395 TADA2AO75478 443 aa8.58□□□□□ -1.04
VPS50-204ENST00000438395 CTDNEP1O95476 244 aa8.58□□□□□ -1.04
VPS50-204ENST00000438395 ARF4P18085 180 aaPredicted RBP8.58□□□□□ -1.04
VPS50-204ENST00000438395 GLRA2P23416 452 aa8.58□□□□□ -1.04
VPS50-204ENST00000438395 RARRES1P49788 294 aa8.58□□□□□ -1.04
VPS50-204ENST00000438395 AFF1P51825 1210 aaKnown RBP8.58□□□□□ -1.04
VPS50-204ENST00000438395 DSG1Q02413 1049 aa8.58□□□□□ -1.04
VPS50-204ENST00000438395 KCNH2Q12809 1159 aa8.58□□□□□ -1.04
VPS50-204ENST00000438395 TCF15Q12870 199 aa8.58□□□□□ -1.04
VPS50-204ENST00000438395 PPP2R5AQ15172 486 aa8.58□□□□□ -1.04
VPS50-204ENST00000438395 USP41Q3LFD5 358 aa8.58□□□□□ -1.04
VPS50-204ENST00000438395 EARS2Q5JPH6 523 aaKnown RBP8.58□□□□□ -1.04
VPS50-204ENST00000438395 HAUS3Q68CZ6 603 aa8.58□□□□□ -1.04
VPS50-204ENST00000438395 FUT10Q6P4F1 479 aa8.58□□□□□ -1.04
VPS50-204ENST00000438395 MAEAQ7L5Y9 396 aa8.58□□□□□ -1.04
VPS50-204ENST00000438395 COLGALT2Q8IYK4 626 aa8.58□□□□□ -1.04
VPS50-204ENST00000438395 RIN2Q8WYP3 895 aaPredicted RBP8.58□□□□□ -1.04
VPS50-204ENST00000438395 TSC1Q92574 1164 aa8.58□□□□□ -1.04
VPS50-204ENST00000438395 PRIMPOLQ96LW4 560 aa8.58□□□□□ -1.04
VPS50-204ENST00000438395 NACC1Q96RE7 527 aa8.58□□□□□ -1.04
VPS50-204ENST00000438395 HSD17B14Q9BPX1 270 aa8.58□□□□□ -1.04
VPS50-204ENST00000438395 NFKBIZQ9BYH8 718 aa8.58□□□□□ -1.04
VPS50-204ENST00000438395 PLEKHA4Q9H4M7 779 aa8.58□□□□□ -1.04
VPS50-204ENST00000438395 TUFT1Q9NNX1 390 aa8.58□□□□□ -1.04
VPS50-204ENST00000438395 PRMT7Q9NVM4 692 aaPredicted RBP8.58□□□□□ -1.04
VPS50-204ENST00000438395 IGSF9Q9P2J2 1179 aa8.58□□□□□ -1.04
VPS50-204ENST00000438395 GMPR2Q9P2T1 348 aaKnown RBP8.58□□□□□ -1.04
VPS50-204ENST00000438395 ZMYM2Q9UBW7 1377 aa8.58□□□□□ -1.04
VPS50-204ENST00000438395 GVINP1Q7Z2Y8 2422 aa8.57□□□□□ -1.04
VPS50-204ENST00000438395 CCDC195A0A1B0GUA6 201 aa8.57□□□□□ -1.04
VPS50-204ENST00000438395 N4BP3O15049 544 aa8.57□□□□□ -1.04
VPS50-204ENST00000438395 JAK2O60674 1132 aa8.57□□□□□ -1.04
VPS50-204ENST00000438395 OR52Z1P0C646 297 aa8.57□□□□□ -1.04
VPS50-204ENST00000438395 MYBP10242 640 aa8.57□□□□□ -1.04
VPS50-204ENST00000438395 XRCC6P12956 609 aaKnown RBP eCLIP8.57□□□□□ -1.04
VPS50-204ENST00000438395 AKAP5P24588 427 aa8.57□□□□□ -1.04
VPS50-204ENST00000438395 CTHP32929 405 aa8.57□□□□□ -1.04
VPS50-204ENST00000438395 ARL2P36404 184 aa8.57□□□□□ -1.04
VPS50-204ENST00000438395 CLCN5P51795 746 aa8.57□□□□□ -1.04
VPS50-204ENST00000438395 GUCY1B3Q02153 619 aa8.57□□□□□ -1.04
VPS50-204ENST00000438395 DSC1Q08554 894 aa8.57□□□□□ -1.04
VPS50-204ENST00000438395 ELAVL2Q12926 359 aaKnown RBP8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms