RNA–Protein interactions for RNA: ENST00000435607.3

SCN4A-201, Transcript of sodium voltage-gated channel alpha subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN4A, Length 7,805 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4A-201ENST00000435607 FAM117BQ6P1L5 589 aa11.79□□□□□ -0.52
SCN4A-201ENST00000435607 DGKHQ86XP1 1220 aa11.79□□□□□ -0.52
SCN4A-201ENST00000435607 CALML6Q8TD86 181 aa11.79□□□□□ -0.52
SCN4A-201ENST00000435607 GLT1D1Q96MS3 346 aa11.79□□□□□ -0.52
SCN4A-201ENST00000435607 NSMCE4AQ9NXX6 385 aa11.79□□□□□ -0.52
SCN4A-201ENST00000435607 STMN3Q9NZ72 180 aa11.79□□□□□ -0.52
SCN4A-201ENST00000435607 GUCY1A2P33402 732 aa11.79□□□□□ -0.52
SCN4A-201ENST00000435607 RBP5P82980 135 aa11.79□□□□□ -0.52
SCN4A-201ENST00000435607 RUNX1T1Q06455 604 aa11.79□□□□□ -0.52
SCN4A-201ENST00000435607 TKFCQ3LXA3 575 aa11.79□□□□□ -0.52
SCN4A-201ENST00000435607 TTLL9Q3SXZ7 439 aa11.79□□□□□ -0.52
SCN4A-201ENST00000435607 PRUNE1Q86TP1 453 aa11.79□□□□□ -0.52
SCN4A-201ENST00000435607 NLRP10Q86W26 655 aa11.79□□□□□ -0.52
SCN4A-201ENST00000435607 PPM1NQ8N819 430 aa11.79□□□□□ -0.52
SCN4A-201ENST00000435607 DEPDC7Q96QD5 511 aa11.79□□□□□ -0.52
SCN4A-201ENST00000435607 COLEC11Q9BWP8 271 aa11.79□□□□□ -0.52
SCN4A-201ENST00000435607 MFSD1Q9H3U5 465 aa11.79□□□□□ -0.52
SCN4A-201ENST00000435607 HOXA2O43364 376 aa11.79□□□□□ -0.52
SCN4A-201ENST00000435607 GTF2E2P29084 291 aaKnown RBP11.79□□□□□ -0.52
SCN4A-201ENST00000435607 SCRN1Q12765 414 aa11.79□□□□□ -0.52
SCN4A-201ENST00000435607 SV2CQ496J9 727 aa11.79□□□□□ -0.52
SCN4A-201ENST00000435607 USP39Q53GS9 565 aaKnown RBP11.79□□□□□ -0.52
SCN4A-201ENST00000435607 TRIM65Q6PJ69 517 aa11.79□□□□□ -0.52
SCN4A-201ENST00000435607 ICA1LQ8NDH6 482 aa11.79□□□□□ -0.52
SCN4A-201ENST00000435607 ARMC2Q8NEN0 867 aa11.79□□□□□ -0.52
SCN4A-201ENST00000435607 EAF2Q96CJ1 260 aaPredicted RBP11.79□□□□□ -0.52
SCN4A-201ENST00000435607 TDRD3Q9H7E2 651 aaKnown RBP11.79□□□□□ -0.52
SCN4A-201ENST00000435607 SLC39A10Q9ULF5 831 aa11.79□□□□□ -0.52
SCN4A-201ENST00000435607 UNC13DQ70J99 1090 aa11.79□□□□□ -0.52
SCN4A-201ENST00000435607 FAM161BQ96MY7 647 aa11.79□□□□□ -0.52
SCN4A-201ENST00000435607 BRD8Q9H0E9 1235 aa11.79□□□□□ -0.52
SCN4A-201ENST00000435607 TBC1D4O60343 1298 aa11.79□□□□□ -0.52
SCN4A-201ENST00000435607 CLASP2O75122 1294 aaKnown RBP11.79□□□□□ -0.52
SCN4A-201ENST00000435607 ATP6V1C1P21283 382 aa11.79□□□□□ -0.52
SCN4A-201ENST00000435607 SOAT1P35610 550 aa11.79□□□□□ -0.52
SCN4A-201ENST00000435607 HIRAP54198 1017 aaPredicted RBP11.79□□□□□ -0.52
SCN4A-201ENST00000435607 PTPAQ15257 358 aa11.79□□□□□ -0.52
SCN4A-201ENST00000435607 P3H1Q32P28 736 aa11.79□□□□□ -0.52
SCN4A-201ENST00000435607 RARS2Q5T160 578 aaKnown RBP11.79□□□□□ -0.52
SCN4A-201ENST00000435607 FAM47EQ6ZV65 393 aa11.79□□□□□ -0.52
SCN4A-201ENST00000435607 GPD1LQ8N335 351 aa11.79□□□□□ -0.52
SCN4A-201ENST00000435607 SHCBP1Q8NEM2 672 aa11.79□□□□□ -0.52
SCN4A-201ENST00000435607 SLC7A14Q8TBB6 771 aa11.79□□□□□ -0.52
SCN4A-201ENST00000435607 JPH1Q9HDC5 661 aaPredicted RBP11.79□□□□□ -0.52
SCN4A-201ENST00000435607 AGO2Q9UKV8 859 aaKnown RBP11.79□□□□□ -0.52
SCN4A-201ENST00000435607 PALLDQ8WX93 1383 aa11.79□□□□□ -0.52
SCN4A-201ENST00000435607 CCDC22O60826 627 aa11.78□□□□□ -0.52
SCN4A-201ENST00000435607 S100A5P33763 92 aa11.78□□□□□ -0.52
SCN4A-201ENST00000435607 OR1G1P47890 313 aa11.78□□□□□ -0.52
SCN4A-201ENST00000435607 MAPRE1Q15691 268 aaKnown RBP11.78□□□□□ -0.52
SCN4A-201ENST00000435607 TDRD10Q5VZ19 366 aaKnown RBP11.78□□□□□ -0.52
SCN4A-201ENST00000435607 NUGGCQ68CJ6 796 aa11.78□□□□□ -0.52
SCN4A-201ENST00000435607 ATP11CQ8NB49 1132 aa11.78□□□□□ -0.52
SCN4A-201ENST00000435607 DTX3LQ8TDB6 740 aa11.78□□□□□ -0.52
SCN4A-201ENST00000435607 INSRP06213 1382 aa11.78□□□□□ -0.52
SCN4A-201ENST00000435607 ZNF335Q9H4Z2 1342 aaPredicted RBP11.78□□□□□ -0.52
SCN4A-201ENST00000435607 ENC1O14682 589 aa11.78□□□□□ -0.52
SCN4A-201ENST00000435607 SLC16A4O15374 487 aa11.78□□□□□ -0.52
SCN4A-201ENST00000435607 BMP10O95393 424 aa11.78□□□□□ -0.52
SCN4A-201ENST00000435607 KITP10721 976 aa11.78□□□□□ -0.52
SCN4A-201ENST00000435607 OSBPL6Q9BZF3 934 aa11.78□□□□□ -0.52
SCN4A-201ENST00000435607 SENP2Q9HC62 589 aa11.78□□□□□ -0.52
SCN4A-201ENST00000435607 PCSK1NQ9UHG2 260 aa11.78□□□□□ -0.52
SCN4A-201ENST00000435607 RPS6KA4O75676 772 aa11.78□□□□□ -0.52
SCN4A-201ENST00000435607 FGGP02679 453 aa11.78□□□□□ -0.52
SCN4A-201ENST00000435607 NR3C1P04150 777 aa11.78□□□□□ -0.52
SCN4A-201ENST00000435607 EFL1Q7Z2Z2 1120 aaKnown RBP11.78□□□□□ -0.52
SCN4A-201ENST00000435607 FGD2Q7Z6J4 655 aa11.78□□□□□ -0.52
SCN4A-201ENST00000435607 RHOT1Q8IXI2 618 aa11.78□□□□□ -0.52
SCN4A-201ENST00000435607 NUDT12Q9BQG2 462 aa11.78□□□□□ -0.52
SCN4A-201ENST00000435607 RPAP3Q9H6T3 665 aaPredicted RBP11.78□□□□□ -0.52
SCN4A-201ENST00000435607 SPASTQ9UBP0 616 aa11.78□□□□□ -0.52
SCN4A-201ENST00000435607 MAST1Q9Y2H9 1570 aa11.78□□□□□ -0.52
SCN4A-201ENST00000435607 C19orf81C9J6K1 198 aa11.78□□□□□ -0.52
SCN4A-201ENST00000435607 RPSAP08865 295 aaKnown RBP11.78□□□□□ -0.52
SCN4A-201ENST00000435607 CXCR5P32302 372 aa11.78□□□□□ -0.52
SCN4A-201ENST00000435607 SNAP25P60880 206 aa11.78□□□□□ -0.52
SCN4A-201ENST00000435607 C2orf54Q08AI8 447 aa11.78□□□□□ -0.52
SCN4A-201ENST00000435607 ZBED8Q8IZ13 594 aa11.78□□□□□ -0.52
SCN4A-201ENST00000435607 SCFD2Q8WU76 684 aa11.78□□□□□ -0.52
SCN4A-201ENST00000435607 SEC31BQ9NQW1 1179 aa11.78□□□□□ -0.52
SCN4A-201ENST00000435607 ZFATQ9P243 1243 aa11.78□□□□□ -0.52
SCN4A-201ENST00000435607 RPS6KB2Q9UBS0 482 aa11.78□□□□□ -0.52
SCN4A-201ENST00000435607 FBXL21Q9UKT6 434 aa11.78□□□□□ -0.52
SCN4A-201ENST00000435607 ATP10BO94823 1461 aa11.78□□□□□ -0.52
SCN4A-201ENST00000435607 C16orf96A6NNT2 1141 aa11.78□□□□□ -0.52
SCN4A-201ENST00000435607 EVPLLA8MZ36 301 aa11.78□□□□□ -0.52
SCN4A-201ENST00000435607 ATP8B1O43520 1251 aa11.78□□□□□ -0.52
SCN4A-201ENST00000435607 WBP4O75554 376 aaKnown RBP11.78□□□□□ -0.52
SCN4A-201ENST00000435607 SASH1O94885 1247 aa11.78□□□□□ -0.52
SCN4A-201ENST00000435607 RPLP2P05387 115 aaKnown RBP11.78□□□□□ -0.52
SCN4A-201ENST00000435607 CETPP11597 493 aa11.78□□□□□ -0.52
SCN4A-201ENST00000435607 CDH6P55285 790 aa11.78□□□□□ -0.52
SCN4A-201ENST00000435607 BLOC1S6Q9UL45 172 aa11.78□□□□□ -0.52
SCN4A-201ENST00000435607 TTLL13PA6NNM8 815 aa11.78□□□□□ -0.52
SCN4A-201ENST00000435607 LZTS3O60299 673 aaPredicted RBP11.78□□□□□ -0.52
SCN4A-201ENST00000435607 C4BPBP20851 252 aa11.78□□□□□ -0.52
SCN4A-201ENST00000435607 ICE2Q659A1 982 aa11.78□□□□□ -0.52
SCN4A-201ENST00000435607 BRINP3Q76B58 766 aa11.78□□□□□ -0.52
SCN4A-201ENST00000435607 TDRD7Q8NHU6 1098 aaKnown RBP11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms