RNA–Protein interactions for RNA: ENST00000434233.2

LINC00339-204, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best)

Gene LINC00339, Length 929 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-204ENST00000434233 ENOX2Q16206 610 aaKnown RBP13.38□□□□□ -0.27
LINC00339-204ENST00000434233 CCDC40Q4G0X9 1142 aa13.38□□□□□ -0.27
LINC00339-204ENST00000434233 OTOP2Q7RTS6 562 aa13.38□□□□□ -0.27
LINC00339-204ENST00000434233 USP37Q86T82 979 aa13.38□□□□□ -0.27
LINC00339-204ENST00000434233 NT5DC4Q86YG4 428 aa13.38□□□□□ -0.27
LINC00339-204ENST00000434233 NPAS4Q8IUM7 802 aa13.38□□□□□ -0.27
LINC00339-204ENST00000434233 PARD3BQ8TEW8 1205 aa13.38□□□□□ -0.27
LINC00339-204ENST00000434233 RSPH1Q8WYR4 309 aa13.38□□□□□ -0.27
LINC00339-204ENST00000434233 APOL6Q9BWW8 343 aa13.38□□□□□ -0.27
LINC00339-204ENST00000434233 RBSNQ9H1K0 784 aa13.38□□□□□ -0.27
LINC00339-204ENST00000434233 HSD3B7Q9H2F3 369 aa13.38□□□□□ -0.27
LINC00339-204ENST00000434233 RSAD1Q9HA92 442 aa13.38□□□□□ -0.27
LINC00339-204ENST00000434233 RBAKQ9NYW8 714 aaPredicted RBP13.38□□□□□ -0.27
LINC00339-204ENST00000434233 MAGEC2Q9UBF1 373 aaPredicted RBP13.38□□□□□ -0.27
LINC00339-204ENST00000434233 ARMCX3Q9UH62 379 aaPredicted RBP13.38□□□□□ -0.27
LINC00339-204ENST00000434233 LRFN2Q9ULH4 789 aa13.38□□□□□ -0.27
LINC00339-204ENST00000434233 TRIP11Q15643 1979 aa13.38□□□□□ -0.27
LINC00339-204ENST00000434233 KCNJ18B7U540 433 aa13.37□□□□□ -0.27
LINC00339-204ENST00000434233 INPPL1O15357 1258 aa13.37□□□□□ -0.27
LINC00339-204ENST00000434233 HOXA2O43364 376 aa13.37□□□□□ -0.27
LINC00339-204ENST00000434233 OFD1O75665 1012 aa13.37□□□□□ -0.27
LINC00339-204ENST00000434233 RECQL4O94761 1208 aa13.37□□□□□ -0.27
LINC00339-204ENST00000434233 CXCL8P10145 99 aa13.37□□□□□ -0.27
LINC00339-204ENST00000434233 MAGEA10P43363 369 aaPredicted RBP13.37□□□□□ -0.27
LINC00339-204ENST00000434233 KCNJ6P48051 423 aa13.37□□□□□ -0.27
LINC00339-204ENST00000434233 VAMP7P51809 220 aa13.37□□□□□ -0.27
LINC00339-204ENST00000434233 WDR5P61964 334 aaKnown RBP13.37□□□□□ -0.27
LINC00339-204ENST00000434233 CLDN10P78369 228 aa13.37□□□□□ -0.27
LINC00339-204ENST00000434233 PPP2R3AQ06190 1150 aa13.37□□□□□ -0.27
LINC00339-204ENST00000434233 BFSP1Q12934 665 aa13.37□□□□□ -0.27
LINC00339-204ENST00000434233 KCNJ12Q14500 433 aa13.37□□□□□ -0.27
LINC00339-204ENST00000434233 TCP11X2Q5H9J9 407 aa13.37□□□□□ -0.27
LINC00339-204ENST00000434233 CREBRFQ8IUR6 639 aa13.37□□□□□ -0.27
LINC00339-204ENST00000434233 PHOSPHO2Q8TCD6 241 aa13.37□□□□□ -0.27
LINC00339-204ENST00000434233 LPPQ93052 612 aa13.37□□□□□ -0.27
LINC00339-204ENST00000434233 CNOT6LQ96LI5 555 aaKnown RBP13.37□□□□□ -0.27
LINC00339-204ENST00000434233 FNBP1Q96RU3 617 aa13.37□□□□□ -0.27
LINC00339-204ENST00000434233 MTIF3Q9H2K0 278 aaKnown RBP13.37□□□□□ -0.27
LINC00339-204ENST00000434233 CNTN3Q9P232 1028 aa13.37□□□□□ -0.27
LINC00339-204ENST00000434233 PCDH10Q9P2E7 1040 aa13.37□□□□□ -0.27
LINC00339-204ENST00000434233 DERAQ9Y315 318 aa13.37□□□□□ -0.27
LINC00339-204ENST00000434233 ANK1P16157 1881 aa13.36□□□□□ -0.27
LINC00339-204ENST00000434233 MEIS3P2A8K0S8 358 aa13.36□□□□□ -0.27
LINC00339-204ENST00000434233 MEFVO15553 781 aaPredicted RBP13.36□□□□□ -0.27
LINC00339-204ENST00000434233 PRKCSHP14314 528 aaPredicted RBP13.36□□□□□ -0.27
LINC00339-204ENST00000434233 KCNE1P15382 129 aa13.36□□□□□ -0.27
LINC00339-204ENST00000434233 AP3M2P53677 418 aa13.36□□□□□ -0.27
LINC00339-204ENST00000434233 UVSSAQ2YD98 709 aa13.36□□□□□ -0.27
LINC00339-204ENST00000434233 RASIP1Q5U651 963 aa13.36□□□□□ -0.27
LINC00339-204ENST00000434233 TRIM59Q8IWR1 403 aa13.36□□□□□ -0.27
LINC00339-204ENST00000434233 RNF169Q8NCN4 708 aa13.36□□□□□ -0.27
LINC00339-204ENST00000434233 RNF214Q8ND24 703 aa13.36□□□□□ -0.27
LINC00339-204ENST00000434233 ANKRD20A12PQ8NF67 263 aa13.36□□□□□ -0.27
LINC00339-204ENST00000434233 CACTINQ8WUQ7 758 aaKnown RBP13.36□□□□□ -0.27
LINC00339-204ENST00000434233 FAM212AQ96EL1 285 aa13.36□□□□□ -0.27
LINC00339-204ENST00000434233 SNX27Q96L92 541 aa13.36□□□□□ -0.27
LINC00339-204ENST00000434233 GDF15Q99988 308 aa13.36□□□□□ -0.27
LINC00339-204ENST00000434233 PDE11AQ9HCR9 933 aa13.36□□□□□ -0.27
LINC00339-204ENST00000434233 RNF19AQ9NV58 838 aa13.36□□□□□ -0.27
LINC00339-204ENST00000434233 MIOSQ9NXC5 875 aa13.36□□□□□ -0.27
LINC00339-204ENST00000434233 KLK14Q9P0G3 267 aa13.36□□□□□ -0.27
LINC00339-204ENST00000434233 KANSL3Q9P2N6 904 aa13.36□□□□□ -0.27
LINC00339-204ENST00000434233 LIMA1Q9UHB6 759 aaKnown RBP13.36□□□□□ -0.27
LINC00339-204ENST00000434233 C2CD2Q9Y426 696 aa13.36□□□□□ -0.27
LINC00339-204ENST00000434233 SMIM28A0A1B0GU29 152 aa13.35□□□□□ -0.27
LINC00339-204ENST00000434233 ARL5CA6NH57 179 aa13.35□□□□□ -0.27
LINC00339-204ENST00000434233 ZBBXA8MT70 800 aa13.35□□□□□ -0.27
LINC00339-204ENST00000434233 H0YGN5 161 aa13.35□□□□□ -0.27
LINC00339-204ENST00000434233 STX10O60499 249 aa13.35□□□□□ -0.27
LINC00339-204ENST00000434233 IBSPP21815 317 aaPredicted RBP13.35□□□□□ -0.27
LINC00339-204ENST00000434233 GTF2H1P32780 548 aa13.35□□□□□ -0.27
LINC00339-204ENST00000434233 BMP8BP34820 402 aa13.35□□□□□ -0.27
LINC00339-204ENST00000434233 MTIF2P46199 727 aaKnown RBP13.35□□□□□ -0.27
LINC00339-204ENST00000434233 WNT7BP56706 349 aa13.35□□□□□ -0.27
LINC00339-204ENST00000434233 DEFB103AP81534 67 aa13.35□□□□□ -0.27
LINC00339-204ENST00000434233 ZBTB6Q15916 424 aa13.35□□□□□ -0.27
LINC00339-204ENST00000434233 HSP90AA4PQ58FG1 418 aa13.35□□□□□ -0.27
LINC00339-204ENST00000434233 GLB1LQ6UWU2 654 aa13.35□□□□□ -0.27
LINC00339-204ENST00000434233 WDR49Q8IV35 697 aa13.35□□□□□ -0.27
LINC00339-204ENST00000434233 GSTCDQ8NEC7 633 aa13.35□□□□□ -0.27
LINC00339-204ENST00000434233 PLEKHO2Q8TD55 490 aa13.35□□□□□ -0.27
LINC00339-204ENST00000434233 CCDC127Q96BQ5 260 aa13.35□□□□□ -0.27
LINC00339-204ENST00000434233 CASD1Q96PB1 797 aa13.35□□□□□ -0.27
LINC00339-204ENST00000434233 RPS6KC1Q96S38 1066 aa13.35□□□□□ -0.27
LINC00339-204ENST00000434233 GAD1Q99259 594 aa13.35□□□□□ -0.27
LINC00339-204ENST00000434233 CGRRF1Q99675 332 aa13.35□□□□□ -0.27
LINC00339-204ENST00000434233 TUBGCP2Q9BSJ2 902 aa13.35□□□□□ -0.27
LINC00339-204ENST00000434233 TMEM117Q9H0C3 514 aa13.35□□□□□ -0.27
LINC00339-204ENST00000434233 INTS13Q9NVM9 706 aa13.35□□□□□ -0.27
LINC00339-204ENST00000434233 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.35□□□□□ -0.27
LINC00339-204ENST00000434233 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.35□□□□□ -0.27
LINC00339-204ENST00000434233 SLC4A7Q9Y6M7 1214 aa13.35□□□□□ -0.27
LINC00339-204ENST00000434233 RALGAPA2Q2PPJ7 1873 aa13.34□□□□□ -0.27
LINC00339-204ENST00000434233 LRRIQ3A6PVS8 624 aaPredicted RBP13.34□□□□□ -0.27
LINC00339-204ENST00000434233 PMM2O15305 246 aa13.34□□□□□ -0.27
LINC00339-204ENST00000434233 XPOTO43592 962 aaKnown RBP13.34□□□□□ -0.27
LINC00339-204ENST00000434233 CAPN15O75808 1086 aa13.34□□□□□ -0.27
LINC00339-204ENST00000434233 DGKIO75912 1065 aa13.34□□□□□ -0.27
LINC00339-204ENST00000434233 UPP2O95045 317 aa13.34□□□□□ -0.27
LINC00339-204ENST00000434233 THP07101 528 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms