RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 ZNF568Q3ZCX4 644 aa12.09□□□□□ -0.47
USP4-205ENST00000431357 RDM1Q8NG50 284 aa12.09□□□□□ -0.47
USP4-205ENST00000431357 MAGEC3Q8TD91 643 aa12.09□□□□□ -0.47
USP4-205ENST00000431357 CLEC4DQ8WXI8 215 aa12.09□□□□□ -0.47
USP4-205ENST00000431357 SEMA4DQ92854 862 aa12.09□□□□□ -0.47
USP4-205ENST00000431357 SGSM3Q96HU1 749 aa12.09□□□□□ -0.47
USP4-205ENST00000431357 MFSD14AQ96MC6 490 aa12.09□□□□□ -0.47
USP4-205ENST00000431357 SERPINB12Q96P63 405 aa12.09□□□□□ -0.47
USP4-205ENST00000431357 C17orf75Q9HAS0 396 aa12.09□□□□□ -0.47
USP4-205ENST00000431357 AVENQ9NQS1 362 aaPredicted RBP12.09□□□□□ -0.47
USP4-205ENST00000431357 RAB20Q9NX57 234 aa12.09□□□□□ -0.47
USP4-205ENST00000431357 COL20A1Q9P218 1284 aa12.09□□□□□ -0.47
USP4-205ENST00000431357 ZNF219Q9P2Y4 722 aaPredicted RBP12.09□□□□□ -0.47
USP4-205ENST00000431357 TCEAL9Q9UHQ7 104 aa12.09□□□□□ -0.47
USP4-205ENST00000431357 ASTN2O75129 1339 aaPredicted RBP12.09□□□□□ -0.47
USP4-205ENST00000431357 CNTNAP1P78357 1384 aa12.09□□□□□ -0.47
USP4-205ENST00000431357 CLRN2A0PK11 232 aa12.08□□□□□ -0.47
USP4-205ENST00000431357 GOLGA8IPA6NC78 632 aa12.08□□□□□ -0.47
USP4-205ENST00000431357 GOLGA8JA6NMD2 632 aa12.08□□□□□ -0.47
USP4-205ENST00000431357 WDR64B1ANS9 1081 aa12.08□□□□□ -0.47
USP4-205ENST00000431357 BACH1O14867 736 aa12.08□□□□□ -0.47
USP4-205ENST00000431357 ATMINO43313 823 aaPredicted RBP12.08□□□□□ -0.47
USP4-205ENST00000431357 ASNSP08243 561 aa12.08□□□□□ -0.47
USP4-205ENST00000431357 FGFR4P22455 802 aa12.08□□□□□ -0.47
USP4-205ENST00000431357 RDXP35241 583 aaKnown RBP12.08□□□□□ -0.47
USP4-205ENST00000431357 KRT76Q01546 638 aa12.08□□□□□ -0.47
USP4-205ENST00000431357 GCNT1Q02742 428 aa12.08□□□□□ -0.47
USP4-205ENST00000431357 CLEC16AQ2KHT3 1053 aa12.08□□□□□ -0.47
USP4-205ENST00000431357 C11orf91Q3C1V1 193 aa12.08□□□□□ -0.47
USP4-205ENST00000431357 SGO2Q562F6 1265 aa12.08□□□□□ -0.47
USP4-205ENST00000431357 XKR9Q5GH70 373 aa12.08□□□□□ -0.47
USP4-205ENST00000431357 FAM102BQ5T8I3 360 aa12.08□□□□□ -0.47
USP4-205ENST00000431357 ZNF677Q86XU0 584 aa12.08□□□□□ -0.47
USP4-205ENST00000431357 CBWD2Q8IUF1 395 aa12.08□□□□□ -0.47
USP4-205ENST00000431357 FUKQ8N0W3 1084 aa12.08□□□□□ -0.47
USP4-205ENST00000431357 TMEM161BQ8NDZ6 487 aa12.08□□□□□ -0.47
USP4-205ENST00000431357 SPIRE2Q8WWL2 714 aa12.08□□□□□ -0.47
USP4-205ENST00000431357 DDX1Q92499 740 aaKnown RBP12.08□□□□□ -0.47
USP4-205ENST00000431357 FBXL18Q96ME1 805 aa12.08□□□□□ -0.47
USP4-205ENST00000431357 BCS1LQ9Y276 419 aa12.08□□□□□ -0.47
USP4-205ENST00000431357 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.08□□□□□ -0.47
USP4-205ENST00000431357 TCRBV7S2A1N4TA0A589 114 aa12.08□□□□□ -0.48
USP4-205ENST00000431357 SMIM23A6NLE4 172 aa12.08□□□□□ -0.48
USP4-205ENST00000431357 CNGA1P29973 690 aa12.08□□□□□ -0.48
USP4-205ENST00000431357 ADSSP30520 456 aa12.08□□□□□ -0.48
USP4-205ENST00000431357 MAPK4P31152 587 aa12.08□□□□□ -0.48
USP4-205ENST00000431357 MRPS9P82933 396 aaKnown RBP12.08□□□□□ -0.48
USP4-205ENST00000431357 PPARDQ03181 441 aa12.08□□□□□ -0.48
USP4-205ENST00000431357 DMP1Q13316 513 aaPredicted RBP12.08□□□□□ -0.48
USP4-205ENST00000431357 SNCBQ16143 134 aa12.08□□□□□ -0.48
USP4-205ENST00000431357 CNGA2Q16280 664 aa12.08□□□□□ -0.48
USP4-205ENST00000431357 CYB5D1Q6P9G0 228 aa12.08□□□□□ -0.48
USP4-205ENST00000431357 FAM83AQ86UY5 434 aa12.08□□□□□ -0.48
USP4-205ENST00000431357 PARP9Q8IXQ6 854 aa12.08□□□□□ -0.48
USP4-205ENST00000431357 LRRC34Q8IZ02 419 aa12.08□□□□□ -0.48
USP4-205ENST00000431357 OGFOD1Q8N543 542 aa12.08□□□□□ -0.48
USP4-205ENST00000431357 ZSWIM2Q8NEG5 633 aa12.08□□□□□ -0.48
USP4-205ENST00000431357 IL31RAQ8NI17 732 aa12.08□□□□□ -0.48
USP4-205ENST00000431357 EPS8L3Q8TE67 593 aaKnown RBP12.08□□□□□ -0.48
USP4-205ENST00000431357 NTPCRQ9BSD7 190 aaKnown RBP12.08□□□□□ -0.48
USP4-205ENST00000431357 PTPN22Q9Y2R2 807 aa12.08□□□□□ -0.48
USP4-205ENST00000431357 FAM170AA1A519 330 aa12.07□□□□□ -0.48
USP4-205ENST00000431357 ANKRD63C9JTQ0 380 aa12.07□□□□□ -0.48
USP4-205ENST00000431357 NFIBO00712 420 aa12.07□□□□□ -0.48
USP4-205ENST00000431357 WDR46O15213 610 aaKnown RBP12.07□□□□□ -0.48
USP4-205ENST00000431357 ABCD1P33897 745 aa12.07□□□□□ -0.48
USP4-205ENST00000431357 KCNJ1P48048 391 aa12.07□□□□□ -0.48
USP4-205ENST00000431357 BPIFB4P59827 614 aa12.07□□□□□ -0.48
USP4-205ENST00000431357 KRT17Q04695 432 aa12.07□□□□□ -0.48
USP4-205ENST00000431357 PTP4A2Q12974 167 aa12.07□□□□□ -0.48
USP4-205ENST00000431357 PTK6Q13882 451 aa12.07□□□□□ -0.48
USP4-205ENST00000431357 RHBDF2Q6PJF5 856 aa12.07□□□□□ -0.48
USP4-205ENST00000431357 OTUD6AQ7L8S5 288 aa12.07□□□□□ -0.48
USP4-205ENST00000431357 SYTL5Q8TDW5 730 aaPredicted RBP12.07□□□□□ -0.48
USP4-205ENST00000431357 DHX38Q92620 1227 aaKnown RBP12.07□□□□□ -0.48
USP4-205ENST00000431357 LPAR1Q92633 364 aa12.07□□□□□ -0.48
USP4-205ENST00000431357 CCDC127Q96BQ5 260 aa12.07□□□□□ -0.48
USP4-205ENST00000431357 SNF8Q96H20 258 aa12.07□□□□□ -0.48
USP4-205ENST00000431357 BTBD6Q96KE9 485 aa12.07□□□□□ -0.48
USP4-205ENST00000431357 PRMT1Q99873 361 aaKnown RBP12.07□□□□□ -0.48
USP4-205ENST00000431357 CDC42EP4Q9H3Q1 356 aaKnown RBP12.07□□□□□ -0.48
USP4-205ENST00000431357 KMT5AQ9NQR1 393 aa12.07□□□□□ -0.48
USP4-205ENST00000431357 CHORDC1Q9UHD1 332 aaPredicted RBP12.07□□□□□ -0.48
USP4-205ENST00000431357 KLHL33A6NCF5 533 aa12.07□□□□□ -0.48
USP4-205ENST00000431357 IRF6O14896 467 aa12.07□□□□□ -0.48
USP4-205ENST00000431357 CLDN3O15551 220 aa12.07□□□□□ -0.48
USP4-205ENST00000431357 GRIN3BO60391 1043 aa12.07□□□□□ -0.48
USP4-205ENST00000431357 DKC1O60832 514 aaKnown RBP eCLIP12.07□□□□□ -0.48
USP4-205ENST00000431357 TCEA3O75764 348 aa12.07□□□□□ -0.48
USP4-205ENST00000431357 GAS8O95995 478 aa12.07□□□□□ -0.48
USP4-205ENST00000431357 VIMP08670 466 aaKnown RBP12.07□□□□□ -0.48
USP4-205ENST00000431357 GARTP22102 1010 aa12.07□□□□□ -0.48
USP4-205ENST00000431357 NPTX2P47972 431 aa12.07□□□□□ -0.48
USP4-205ENST00000431357 MAP3K10Q02779 954 aa12.07□□□□□ -0.48
USP4-205ENST00000431357 CENPCQ03188 943 aa12.07□□□□□ -0.48
USP4-205ENST00000431357 CYP24A1Q07973 514 aa12.07□□□□□ -0.48
USP4-205ENST00000431357 XRRA1Q6P2D8 792 aa12.07□□□□□ -0.48
USP4-205ENST00000431357 CEP128Q6ZU80 1094 aa12.07□□□□□ -0.48
USP4-205ENST00000431357 BBOF1Q8ND07 529 aa12.07□□□□□ -0.48
USP4-205ENST00000431357 TAS1R2Q8TE23 839 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms