RNA–Protein interactions for RNA: ENST00000429277.6

LDB3-205, Transcript of LIM domain binding 3, humanhuman

TSL 2 BASIC

Gene LDB3, Length 5,436 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-205ENST00000429277 DNAJC6O75061 913 aa13.5□□□□□ -0.25
LDB3-205ENST00000429277 KCNA2P16389 499 aa13.5□□□□□ -0.25
LDB3-205ENST00000429277 ACADSBP45954 432 aa13.5□□□□□ -0.25
LDB3-205ENST00000429277 EIF3EP60228 445 aaKnown RBP13.5□□□□□ -0.25
LDB3-205ENST00000429277 KCNA1Q09470 495 aa13.5□□□□□ -0.25
LDB3-205ENST00000429277 BYSLQ13895 437 aaKnown RBP13.5□□□□□ -0.25
LDB3-205ENST00000429277 SGSM1Q2NKQ1 1148 aa13.5□□□□□ -0.25
LDB3-205ENST00000429277 NFRKBQ6P4R8 1299 aa13.5□□□□□ -0.25
LDB3-205ENST00000429277 ADA2Q9NZK5 511 aa13.5□□□□□ -0.25
LDB3-205ENST00000429277 P4HA2O15460 535 aa13.49□□□□□ -0.25
LDB3-205ENST00000429277 SYF2O95926 243 aaKnown RBP13.49□□□□□ -0.25
LDB3-205ENST00000429277 CDH2P19022 906 aaPredicted RBP13.49□□□□□ -0.25
LDB3-205ENST00000429277 GTF2H3Q13889 308 aa13.49□□□□□ -0.25
LDB3-205ENST00000429277 RMDN1Q96DB5 314 aa13.49□□□□□ -0.25
LDB3-205ENST00000429277 OTUD5Q96G74 571 aa13.49□□□□□ -0.25
LDB3-205ENST00000429277 RNPC3Q96LT9 517 aaKnown RBP13.49□□□□□ -0.25
LDB3-205ENST00000429277 TSC22D3Q99576 134 aa13.49□□□□□ -0.25
LDB3-205ENST00000429277 C7orf25Q9BPX7 421 aa13.49□□□□□ -0.25
LDB3-205ENST00000429277 AIPL1Q9NZN9 384 aa13.49□□□□□ -0.25
LDB3-205ENST00000429277 APEX2Q9UBZ4 518 aa13.49□□□□□ -0.25
LDB3-205ENST00000429277 UBA6A0AVT1 1052 aaPredicted RBP13.49□□□□□ -0.25
LDB3-205ENST00000429277 HIST1H2AGP0C0S8 130 aaPredicted RBP13.49□□□□□ -0.25
LDB3-205ENST00000429277 HIST1H2ADP20671 130 aa13.49□□□□□ -0.25
LDB3-205ENST00000429277 CLEC17AQ6ZS10 378 aa13.49□□□□□ -0.25
LDB3-205ENST00000429277 TRAPPC11Q7Z392 1133 aa13.49□□□□□ -0.25
LDB3-205ENST00000429277 YAF2Q8IY57 180 aa13.49□□□□□ -0.25
LDB3-205ENST00000429277 STAG2Q8N3U4 1231 aa13.49□□□□□ -0.25
LDB3-205ENST00000429277 RNF149Q8NC42 400 aa13.49□□□□□ -0.25
LDB3-205ENST00000429277 APPL2Q8NEU8 664 aa13.49□□□□□ -0.25
LDB3-205ENST00000429277 HIST1H2AHQ96KK5 128 aa13.49□□□□□ -0.25
LDB3-205ENST00000429277 MAP3K14Q99558 947 aa13.49□□□□□ -0.25
LDB3-205ENST00000429277 HIST1H2AJQ99878 128 aa13.49□□□□□ -0.25
LDB3-205ENST00000429277 H2AFJQ9BTM1 129 aa13.49□□□□□ -0.25
LDB3-205ENST00000429277 CASS4Q9NQ75 786 aa13.49□□□□□ -0.25
LDB3-205ENST00000429277 TXNP10599 105 aaKnown RBP13.49□□□□□ -0.25
LDB3-205ENST00000429277 ARSEP51690 589 aa13.49□□□□□ -0.25
LDB3-205ENST00000429277 RABL6Q3YEC7 729 aaPredicted RBP13.49□□□□□ -0.25
LDB3-205ENST00000429277 ACCSLQ4AC99 568 aa13.49□□□□□ -0.25
LDB3-205ENST00000429277 ICA1LQ8NDH6 482 aa13.49□□□□□ -0.25
LDB3-205ENST00000429277 CRB1P82279 1406 aa13.49□□□□□ -0.25
LDB3-205ENST00000429277 FRMD3A2A2Y4 597 aa13.49□□□□□ -0.25
LDB3-205ENST00000429277 SRGAP2O75044 1071 aa13.49□□□□□ -0.25
LDB3-205ENST00000429277 ITIH2P19823 946 aa13.49□□□□□ -0.25
LDB3-205ENST00000429277 KRT17Q04695 432 aa13.49□□□□□ -0.25
LDB3-205ENST00000429277 INPP5AQ14642 412 aa13.49□□□□□ -0.25
LDB3-205ENST00000429277 SLC18A3Q16572 532 aa13.49□□□□□ -0.25
LDB3-205ENST00000429277 LRIG3Q6UXM1 1119 aa13.49□□□□□ -0.25
LDB3-205ENST00000429277 NLRP14Q86W24 1093 aa13.49□□□□□ -0.25
LDB3-205ENST00000429277 HIPK4Q8NE63 616 aa13.49□□□□□ -0.25
LDB3-205ENST00000429277 CALML6Q8TD86 181 aa13.49□□□□□ -0.25
LDB3-205ENST00000429277 SENP7Q9BQF6 1050 aa13.49□□□□□ -0.25
LDB3-205ENST00000429277 FAM129AQ9BZQ8 928 aa13.49□□□□□ -0.25
LDB3-205ENST00000429277 TRIM9Q9C026 710 aa13.49□□□□□ -0.25
LDB3-205ENST00000429277 SUFUQ9UMX1 484 aa13.49□□□□□ -0.25
LDB3-205ENST00000429277 USP31Q70CQ4 1352 aa13.48□□□□□ -0.25
LDB3-205ENST00000429277 GOLGA8TH3BQL2 631 aa13.48□□□□□ -0.25
LDB3-205ENST00000429277 NMT2O60551 498 aa13.48□□□□□ -0.25
LDB3-205ENST00000429277 FBXW4P57775 412 aa13.48□□□□□ -0.25
LDB3-205ENST00000429277 ZNF543Q08ER8 600 aa13.48□□□□□ -0.25
LDB3-205ENST00000429277 ZNF211Q13398 564 aaPredicted RBP13.48□□□□□ -0.25
LDB3-205ENST00000429277 OR6J1Q8NGC5 347 aa13.48□□□□□ -0.25
LDB3-205ENST00000429277 SEPT1Q8WYJ6 367 aa13.48□□□□□ -0.25
LDB3-205ENST00000429277 RNF181Q9P0P0 153 aa13.48□□□□□ -0.25
LDB3-205ENST00000429277 MTSS1O43312 755 aa13.48□□□□□ -0.25
LDB3-205ENST00000429277 MOCS2O96007 188 aaPredicted RBP13.48□□□□□ -0.25
LDB3-205ENST00000429277 PRR29P0C7W0 189 aa13.48□□□□□ -0.25
LDB3-205ENST00000429277 AKR1B1P15121 316 aa13.48□□□□□ -0.25
LDB3-205ENST00000429277 KRT72Q14CN4 511 aa13.48□□□□□ -0.25
LDB3-205ENST00000429277 MTFR1Q15390 333 aa13.48□□□□□ -0.25
LDB3-205ENST00000429277 TERF2Q15554 542 aa13.48□□□□□ -0.25
LDB3-205ENST00000429277 MEI1Q5TIA1 1274 aa13.48□□□□□ -0.25
LDB3-205ENST00000429277 RGS9BPQ6ZS82 235 aa13.48□□□□□ -0.25
LDB3-205ENST00000429277 MFN1Q8IWA4 741 aa13.48□□□□□ -0.25
LDB3-205ENST00000429277 MKNK1Q9BUB5 465 aa13.48□□□□□ -0.25
LDB3-205ENST00000429277 FRMD8Q9BZ67 464 aaPredicted RBP13.48□□□□□ -0.25
LDB3-205ENST00000429277 ZNRF3Q9ULT6 936 aa13.48□□□□□ -0.25
LDB3-205ENST00000429277 MRFAP1Q9Y605 127 aa13.48□□□□□ -0.25
LDB3-205ENST00000429277 ARHGEF40Q8TER5 1519 aa13.48□□□□□ -0.25
LDB3-205ENST00000429277 AFF2P51816 1311 aa13.48□□□□□ -0.25
LDB3-205ENST00000429277 USP42Q9H9J4 1324 aaKnown RBP13.48□□□□□ -0.25
LDB3-205ENST00000429277 SUPT3HO75486 399 aa13.48□□□□□ -0.25
LDB3-205ENST00000429277 RBBP7Q16576 425 aa13.48□□□□□ -0.25
LDB3-205ENST00000429277 THEMIS2Q5TEJ8 643 aa13.48□□□□□ -0.25
LDB3-205ENST00000429277 ZNF677Q86XU0 584 aa13.48□□□□□ -0.25
LDB3-205ENST00000429277 DACH2Q96NX9 599 aa13.48□□□□□ -0.25
LDB3-205ENST00000429277 SMYD3Q9H7B4 428 aa13.48□□□□□ -0.25
LDB3-205ENST00000429277 MTMR4Q9NYA4 1195 aa13.48□□□□□ -0.25
LDB3-205ENST00000429277 SLC25A27O95847 323 aa13.48□□□□□ -0.25
LDB3-205ENST00000429277 ST8SIA6P61647 398 aa13.48□□□□□ -0.25
LDB3-205ENST00000429277 DYNC1I2Q13409 638 aaKnown RBP13.48□□□□□ -0.25
LDB3-205ENST00000429277 GRAMD4Q6IC98 578 aa13.48□□□□□ -0.25
LDB3-205ENST00000429277 LRRC8BQ6P9F7 803 aa13.48□□□□□ -0.25
LDB3-205ENST00000429277 RDM1Q8NG50 284 aa13.48□□□□□ -0.25
LDB3-205ENST00000429277 COG1Q8WTW3 980 aa13.48□□□□□ -0.25
LDB3-205ENST00000429277 SCFD2Q8WU76 684 aa13.48□□□□□ -0.25
LDB3-205ENST00000429277 VIPAS39Q9H9C1 493 aa13.48□□□□□ -0.25
LDB3-205ENST00000429277 HSPBP1Q9NZL4 362 aa13.48□□□□□ -0.25
LDB3-205ENST00000429277 GTPBP10A4D1E9 387 aaKnown RBP13.47□□□□□ -0.25
LDB3-205ENST00000429277 TNPO2O14787 897 aaKnown RBP13.47□□□□□ -0.25
LDB3-205ENST00000429277 MAN1A2O60476 641 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms