RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 LLPHQ9BRT6 129 aaKnown RBP15.98■□□□□ 0.15
SDC1-204ENST00000429035 DDX19AQ9NUU7 478 aaKnown RBP15.98■□□□□ 0.15
SDC1-204ENST00000429035 LRWD1Q9UFC0 647 aa15.98■□□□□ 0.15
SDC1-204ENST00000429035 KIAA1024Q9UPX6 916 aa15.98■□□□□ 0.15
SDC1-204ENST00000429035 HARSP12081 509 aaKnown RBP15.97■□□□□ 0.15
SDC1-204ENST00000429035 NPR3P17342 541 aa15.97■□□□□ 0.15
SDC1-204ENST00000429035 OSTNP61366 133 aa15.97■□□□□ 0.15
SDC1-204ENST00000429035 ELAVL2Q12926 359 aaKnown RBP15.97■□□□□ 0.15
SDC1-204ENST00000429035 ZRSR1Q15695 479 aaKnown RBP15.97■□□□□ 0.15
SDC1-204ENST00000429035 ZNF568Q3ZCX4 644 aa15.97■□□□□ 0.15
SDC1-204ENST00000429035 ASCL5Q7RTU5 278 aa15.97■□□□□ 0.15
SDC1-204ENST00000429035 APBB1IPQ7Z5R6 666 aaPredicted RBP15.97■□□□□ 0.15
SDC1-204ENST00000429035 FBXO18Q8NFZ0 1043 aa15.97■□□□□ 0.15
SDC1-204ENST00000429035 PIK3R5Q8WYR1 880 aa15.97■□□□□ 0.15
SDC1-204ENST00000429035 KIFAP3Q92845 792 aa15.97■□□□□ 0.15
SDC1-204ENST00000429035 RTP3Q9BQQ7 232 aa15.97■□□□□ 0.15
SDC1-204ENST00000429035 RHOBTB2Q9BYZ6 727 aa15.97■□□□□ 0.15
SDC1-204ENST00000429035 RAB34Q9BZG1 259 aa15.97■□□□□ 0.15
SDC1-204ENST00000429035 TBC1D17Q9HA65 648 aa15.97■□□□□ 0.15
SDC1-204ENST00000429035 GOLGA2P5Q9HBQ8 144 aa15.97■□□□□ 0.15
SDC1-204ENST00000429035 NUMBLQ9Y6R0 609 aa15.97■□□□□ 0.15
SDC1-204ENST00000429035 USP34Q70CQ2 3546 aa15.97■□□□□ 0.15
SDC1-204ENST00000429035 PHLPP2Q6ZVD8 1323 aa15.96■□□□□ 0.15
SDC1-204ENST00000429035 KRBA1A5PL33 1030 aa15.96■□□□□ 0.15
SDC1-204ENST00000429035 ADAM12O43184 909 aa15.96■□□□□ 0.15
SDC1-204ENST00000429035 B3GAT3O94766 335 aa15.96■□□□□ 0.15
SDC1-204ENST00000429035 SRFP11831 508 aa15.96■□□□□ 0.15
SDC1-204ENST00000429035 FXR2P51116 673 aaKnown RBP eCLIP15.96■□□□□ 0.15
SDC1-204ENST00000429035 EFNA5P52803 228 aa15.96■□□□□ 0.15
SDC1-204ENST00000429035 PEX3P56589 373 aa15.96■□□□□ 0.15
SDC1-204ENST00000429035 SPECC1Q5M775 1068 aa15.96■□□□□ 0.15
SDC1-204ENST00000429035 LILRA6Q6PI73 481 aa15.96■□□□□ 0.15
SDC1-204ENST00000429035 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.96■□□□□ 0.15
SDC1-204ENST00000429035 CCDC105Q8IYK2 499 aa15.96■□□□□ 0.15
SDC1-204ENST00000429035 GPR65Q8IYL9 337 aa15.96■□□□□ 0.15
SDC1-204ENST00000429035 SLC44A3Q8N4M1 653 aa15.96■□□□□ 0.15
SDC1-204ENST00000429035 CEP120Q8N960 986 aa15.96■□□□□ 0.15
SDC1-204ENST00000429035 LNX1Q8TBB1 728 aaPredicted RBP15.96■□□□□ 0.15
SDC1-204ENST00000429035 SLC7A14Q8TBB6 771 aa15.96■□□□□ 0.15
SDC1-204ENST00000429035 GPR152Q8TDT2 470 aa15.96■□□□□ 0.15
SDC1-204ENST00000429035 ZSCAN31Q96LW9 406 aaPredicted RBP15.96■□□□□ 0.15
SDC1-204ENST00000429035 CLSTN3Q9BQT9 956 aa15.96■□□□□ 0.15
SDC1-204ENST00000429035 PDCD11Q14690 1871 aaKnown RBP15.96■□□□□ 0.15
SDC1-204ENST00000429035 PRR23AA6NEV1 266 aa15.95■□□□□ 0.14
SDC1-204ENST00000429035 PP2D1A8MPX8 630 aa15.95■□□□□ 0.14
SDC1-204ENST00000429035 I3L4J1 428 aa15.95■□□□□ 0.14
SDC1-204ENST00000429035 K7ERI5 159 aa15.95■□□□□ 0.14
SDC1-204ENST00000429035 LAMP2P13473 410 aa15.95■□□□□ 0.14
SDC1-204ENST00000429035 MUTP22033 750 aa15.95■□□□□ 0.14
SDC1-204ENST00000429035 NBL1P41271 181 aa15.95■□□□□ 0.14
SDC1-204ENST00000429035 TRAPPC10P48553 1259 aa15.95■□□□□ 0.14
SDC1-204ENST00000429035 CLCNKBP51801 687 aa15.95■□□□□ 0.14
SDC1-204ENST00000429035 YARSP54577 528 aaKnown RBP15.95■□□□□ 0.14
SDC1-204ENST00000429035 DMP1Q13316 513 aaPredicted RBP15.95■□□□□ 0.14
SDC1-204ENST00000429035 ANGPT1Q15389 498 aa15.95■□□□□ 0.14
SDC1-204ENST00000429035 NT5DC1Q5TFE4 455 aa15.95■□□□□ 0.14
SDC1-204ENST00000429035 PDXDC1Q6P996 788 aa15.95■□□□□ 0.14
SDC1-204ENST00000429035 DTWD2Q8NBA8 298 aa15.95■□□□□ 0.14
SDC1-204ENST00000429035 CCDC94Q9BW85 323 aaPredicted RBP15.95■□□□□ 0.14
SDC1-204ENST00000429035 ARHGEF3Q9NR81 526 aa15.95■□□□□ 0.14
SDC1-204ENST00000429035 SH2B1Q9NRF2 756 aaPredicted RBP15.95■□□□□ 0.14
SDC1-204ENST00000429035 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP15.95■□□□□ 0.143e-7■■■■□ 23.8
SDC1-204ENST00000429035 E9PMD0 336 aa15.94■□□□□ 0.14
SDC1-204ENST00000429035 HIP1RO75146 1068 aa15.94■□□□□ 0.14
SDC1-204ENST00000429035 XYLBO75191 536 aa15.94■□□□□ 0.14
SDC1-204ENST00000429035 TKTP29401 623 aaKnown RBP15.94■□□□□ 0.14
SDC1-204ENST00000429035 OR1D2P34982 312 aa15.94■□□□□ 0.14
SDC1-204ENST00000429035 BRCC3P46736 316 aa15.94■□□□□ 0.14
SDC1-204ENST00000429035 PTGDRQ13258 359 aa15.94■□□□□ 0.14
SDC1-204ENST00000429035 HTR4Q13639 388 aa15.94■□□□□ 0.14
SDC1-204ENST00000429035 NAB2Q15742 525 aa15.94■□□□□ 0.14
SDC1-204ENST00000429035 KRT79Q5XKE5 535 aa15.94■□□□□ 0.14
SDC1-204ENST00000429035 MCTP1Q6DN14 999 aa15.94■□□□□ 0.14
SDC1-204ENST00000429035 NKD2Q969F2 451 aaPredicted RBP15.94■□□□□ 0.14
SDC1-204ENST00000429035 NXPE3Q969Y0 559 aa15.94■□□□□ 0.14
SDC1-204ENST00000429035 CDT1Q9H211 546 aa15.94■□□□□ 0.14
SDC1-204ENST00000429035 WNT16Q9UBV4 365 aa15.94■□□□□ 0.14
SDC1-204ENST00000429035 PCDHB6Q9Y5E3 794 aa15.94■□□□□ 0.14
SDC1-204ENST00000429035 CDY1Q9Y6F8 540 aa15.94■□□□□ 0.14
SDC1-204ENST00000429035 ZFHX2Q9C0A1 2572 aaPredicted RBP15.94■□□□□ 0.14
SDC1-204ENST00000429035 PTPRZ1P23471 2315 aaPredicted RBP15.94■□□□□ 0.14
SDC1-204ENST00000429035 FAM186AA6NE01 2351 aa15.93■□□□□ 0.14
SDC1-204ENST00000429035 PROB1E7EW31 1015 aa15.93■□□□□ 0.14
SDC1-204ENST00000429035 C1RP00736 705 aa15.93■□□□□ 0.14
SDC1-204ENST00000429035 DCNP07585 359 aaKnown RBP15.93■□□□□ 0.14
SDC1-204ENST00000429035 HNRNPA1P09651 372 aaKnown RBP eCLIP15.93■□□□□ 0.14
SDC1-204ENST00000429035 IGFBP6P24592 240 aaPredicted RBP15.93■□□□□ 0.14
SDC1-204ENST00000429035 AXDND1Q5T1B0 1012 aaPredicted RBP15.93■□□□□ 0.14
SDC1-204ENST00000429035 ERICH6BQ5W0A0 696 aa15.93■□□□□ 0.14
SDC1-204ENST00000429035 ING5Q8WYH8 240 aa15.93■□□□□ 0.14
SDC1-204ENST00000429035 PPP1R10Q96QC0 940 aaKnown RBP15.93■□□□□ 0.14
SDC1-204ENST00000429035 TCHPQ9BT92 498 aa15.93■□□□□ 0.14
SDC1-204ENST00000429035 RUSC1Q9BVN2 902 aa15.93■□□□□ 0.14
SDC1-204ENST00000429035 MRPL4Q9BYD3 311 aaKnown RBP15.93■□□□□ 0.14
SDC1-204ENST00000429035 KMT5AQ9NQR1 393 aa15.93■□□□□ 0.14
SDC1-204ENST00000429035 TOPORSQ9NS56 1045 aaPredicted RBP15.93■□□□□ 0.14
SDC1-204ENST00000429035 HCFC1R1Q9NWW0 138 aa15.93■□□□□ 0.14
SDC1-204ENST00000429035 ANKFY1Q9P2R3 1169 aa15.93■□□□□ 0.14
SDC1-204ENST00000429035 MTRRQ9UBK8 725 aa15.93■□□□□ 0.14
SDC1-204ENST00000429035 CDH7Q9ULB5 785 aa15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms