RNA–Protein interactions for RNA: ENST00000428026.6

PTPRU-204, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,550 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-204ENST00000428026 ARL13BQ3SXY8 428 aa15.32■□□□□ 0.04
PTPRU-204ENST00000428026 PADI6Q6TGC4 694 aa15.32■□□□□ 0.04
PTPRU-204ENST00000428026 DLGAP2Q9P1A6 1054 aa15.32■□□□□ 0.04
PTPRU-204ENST00000428026 CSF1RP07333 972 aa15.32■□□□□ 0.04
PTPRU-204ENST00000428026 SAMD7Q7Z3H4 446 aa15.32■□□□□ 0.04
PTPRU-204ENST00000428026 TC2NQ8N9U0 490 aa15.32■□□□□ 0.04
PTPRU-204ENST00000428026 MRPL40Q9NQ50 206 aaKnown RBP15.32■□□□□ 0.04
PTPRU-204ENST00000428026 SLC13A4Q9UKG4 626 aa15.32■□□□□ 0.04
PTPRU-204ENST00000428026 NEMP1O14524 444 aa15.31■□□□□ 0.04
PTPRU-204ENST00000428026 SNX2O60749 519 aa15.31■□□□□ 0.04
PTPRU-204ENST00000428026 NSUN4Q96CB9 384 aaKnown RBP15.31■□□□□ 0.04
PTPRU-204ENST00000428026 FSD1LQ9BXM9 530 aa15.31■□□□□ 0.04
PTPRU-204ENST00000428026 SLC9A2Q9UBY0 812 aa15.31■□□□□ 0.04
PTPRU-204ENST00000428026 IGF2BP3O00425 579 aaKnown RBP eCLIP15.31■□□□□ 0.04
PTPRU-204ENST00000428026 CSPG5O95196 566 aa15.31■□□□□ 0.04
PTPRU-204ENST00000428026 SERPINB3P29508 390 aa15.31■□□□□ 0.04
PTPRU-204ENST00000428026 RHOT1Q8IXI2 618 aa15.31■□□□□ 0.04
PTPRU-204ENST00000428026 SNRNP27Q8WVK2 155 aaKnown RBP15.31■□□□□ 0.04
PTPRU-204ENST00000428026 RAD51CO43502 376 aa15.31■□□□□ 0.04
PTPRU-204ENST00000428026 ROR1Q01973 937 aa15.31■□□□□ 0.04
PTPRU-204ENST00000428026 HOMEZQ8IX15 550 aa15.31■□□□□ 0.04
PTPRU-204ENST00000428026 RNF139Q8WU17 664 aa15.31■□□□□ 0.04
PTPRU-204ENST00000428026 DCAF4Q8WV16 495 aa15.31■□□□□ 0.04
PTPRU-204ENST00000428026 NAF1Q96HR8 494 aaKnown RBP15.31■□□□□ 0.04
PTPRU-204ENST00000428026 CDHR1Q96JP9 859 aa15.31■□□□□ 0.04
PTPRU-204ENST00000428026 FBXO2Q9UK22 296 aaPredicted RBP15.31■□□□□ 0.04
PTPRU-204ENST00000428026 DAB1O75553 588 aa15.31■□□□□ 0.04
PTPRU-204ENST00000428026 CALB1P05937 261 aa15.31■□□□□ 0.04
PTPRU-204ENST00000428026 SMARCA1P28370 1054 aa15.31■□□□□ 0.04
PTPRU-204ENST00000428026 GNA15P30679 374 aa15.31■□□□□ 0.04
PTPRU-204ENST00000428026 HMGCS2P54868 508 aa15.31■□□□□ 0.04
PTPRU-204ENST00000428026 STAT4Q14765 748 aa15.31■□□□□ 0.04
PTPRU-204ENST00000428026 GUF1Q8N442 669 aaKnown RBP15.31■□□□□ 0.04
PTPRU-204ENST00000428026 THTPAQ9BU02 230 aa15.31■□□□□ 0.04
PTPRU-204ENST00000428026 ADGRB1O14514 1584 aa15.31■□□□□ 0.04
PTPRU-204ENST00000428026 SYNDIG1LA6NDD5 238 aa15.3■□□□□ 0.04
PTPRU-204ENST00000428026 TDP2O95551 362 aa15.3■□□□□ 0.04
PTPRU-204ENST00000428026 CCDC159P0C7I6 412 aa15.3■□□□□ 0.04
PTPRU-204ENST00000428026 CCND1P24385 295 aa15.3■□□□□ 0.04
PTPRU-204ENST00000428026 FASTKD1Q53R41 847 aaKnown RBP15.3■□□□□ 0.04
PTPRU-204ENST00000428026 ZC3H12BQ5HYM0 836 aaKnown RBP15.3■□□□□ 0.04
PTPRU-204ENST00000428026 GALNT4Q8N4A0 578 aa15.3■□□□□ 0.04
PTPRU-204ENST00000428026 MDM1Q8TC05 714 aa15.3■□□□□ 0.04
PTPRU-204ENST00000428026 SCG3Q8WXD2 468 aaKnown RBP15.3■□□□□ 0.04
PTPRU-204ENST00000428026 SNX19Q92543 992 aa15.3■□□□□ 0.04
PTPRU-204ENST00000428026 TSSK1BQ9BXA7 367 aa15.3■□□□□ 0.04
PTPRU-204ENST00000428026 SARS2Q9NP81 518 aaKnown RBP15.3■□□□□ 0.04
PTPRU-204ENST00000428026 CYP26B1Q9NR63 512 aa15.3■□□□□ 0.04
PTPRU-204ENST00000428026 GSG1L2A8MUP6 293 aa15.3■□□□□ 0.04
PTPRU-204ENST00000428026 F5H6K3 240 aa15.3■□□□□ 0.04
PTPRU-204ENST00000428026 KRT4P19013 534 aa15.3■□□□□ 0.04
PTPRU-204ENST00000428026 MAP4P27816 1152 aaKnown RBP15.3■□□□□ 0.04
PTPRU-204ENST00000428026 KLRC3Q07444 240 aa15.3■□□□□ 0.04
PTPRU-204ENST00000428026 HIF1AQ16665 826 aa15.3■□□□□ 0.04
PTPRU-204ENST00000428026 CEP55Q53EZ4 464 aa15.3■□□□□ 0.04
PTPRU-204ENST00000428026 AGGF1Q8N302 714 aaeCLIP15.3■□□□□ 0.04
PTPRU-204ENST00000428026 ZNF507Q8TCN5 953 aa15.3■□□□□ 0.04
PTPRU-204ENST00000428026 COG4Q9H9E3 785 aa15.3■□□□□ 0.04
PTPRU-204ENST00000428026 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.3■□□□□ 0.04
PTPRU-204ENST00000428026 FAM205CA6NFA0 338 aa15.3■□□□□ 0.04
PTPRU-204ENST00000428026 SOX11P35716 441 aa15.3■□□□□ 0.04
PTPRU-204ENST00000428026 AP1B1Q10567 949 aa15.3■□□□□ 0.04
PTPRU-204ENST00000428026 ZNF699Q32M78 642 aa15.3■□□□□ 0.04
PTPRU-204ENST00000428026 NBPF20Q3BBV1 942 aa15.3■□□□□ 0.04
PTPRU-204ENST00000428026 SLFN12LQ6IEE8 588 aa15.3■□□□□ 0.04
PTPRU-204ENST00000428026 STOX1Q6ZVD7 989 aa15.3■□□□□ 0.04
PTPRU-204ENST00000428026 DDIASQ8IXT1 998 aa15.3■□□□□ 0.04
PTPRU-204ENST00000428026 TEKT2Q9UIF3 430 aa15.3■□□□□ 0.04
PTPRU-204ENST00000428026 PITPNM2Q9BZ72 1349 aa15.3■□□□□ 0.04
PTPRU-204ENST00000428026 UBE3AQ05086 875 aa15.3■□□□□ 0.04
PTPRU-204ENST00000428026 HEATR6Q6AI08 1181 aaKnown RBP15.3■□□□□ 0.04
PTPRU-204ENST00000428026 LRIG3Q6UXM1 1119 aa15.3■□□□□ 0.04
PTPRU-204ENST00000428026 ARMCX2Q7L311 632 aa15.3■□□□□ 0.04
PTPRU-204ENST00000428026 ACAP3Q96P50 834 aa15.3■□□□□ 0.04
PTPRU-204ENST00000428026 CEMIPQ8WUJ3 1361 aa15.3■□□□□ 0.04
PTPRU-204ENST00000428026 NPHP3-ACAD11A0A0J9YXS1 232 aa15.3■□□□□ 0.04
PTPRU-204ENST00000428026 AKR1B1P15121 316 aa15.3■□□□□ 0.04
PTPRU-204ENST00000428026 TMA16Q96EY4 203 aaKnown RBP15.3■□□□□ 0.04
PTPRU-204ENST00000428026 IP6K2Q9UHH9 426 aa15.3■□□□□ 0.04
PTPRU-204ENST00000428026 SURF1Q15526 300 aa15.29■□□□□ 0.04
PTPRU-204ENST00000428026 BTNL9Q6UXG8 535 aa15.29■□□□□ 0.04
PTPRU-204ENST00000428026 TTC8Q8TAM2 541 aa15.29■□□□□ 0.04
PTPRU-204ENST00000428026 FAM118BQ9BPY3 351 aa15.29■□□□□ 0.04
PTPRU-204ENST00000428026 CELF4Q9BZC1 486 aaKnown RBP15.29■□□□□ 0.04
PTPRU-204ENST00000428026 RHBDL2Q9NX52 303 aa15.29■□□□□ 0.04
PTPRU-204ENST00000428026 SUGT1Q9Y2Z0 365 aa15.29■□□□□ 0.04
PTPRU-204ENST00000428026 EMSYQ7Z589 1322 aa15.29■□□□□ 0.04
PTPRU-204ENST00000428026 CLDN3O15551 220 aa15.29■□□□□ 0.04
PTPRU-204ENST00000428026 PLA2G4AP47712 749 aa15.29■□□□□ 0.04
PTPRU-204ENST00000428026 SKOR1P84550 965 aa15.29■□□□□ 0.04
PTPRU-204ENST00000428026 MTM1Q13496 603 aa15.29■□□□□ 0.04
PTPRU-204ENST00000428026 TRIP10Q15642 601 aa15.29■□□□□ 0.04
PTPRU-204ENST00000428026 IMPG1Q17R60 797 aa15.29■□□□□ 0.04
PTPRU-204ENST00000428026 KLF6Q99612 283 aaPredicted RBP15.29■□□□□ 0.04
PTPRU-204ENST00000428026 FEM1BQ9UK73 627 aa15.29■□□□□ 0.04
PTPRU-204ENST00000428026 CCT8L1PA6NM43 557 aa15.29■□□□□ 0.04
PTPRU-204ENST00000428026 M0QYV0 167 aa15.29■□□□□ 0.04
PTPRU-204ENST00000428026 ENO3P13929 434 aaPredicted RBP15.29■□□□□ 0.04
PTPRU-204ENST00000428026 COPB2P35606 906 aa15.29■□□□□ 0.04
PTPRU-204ENST00000428026 CPA2P48052 419 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms