RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 MTMR1Q13613 665 aa15.32■□□□□ 0.04
LIG1-202ENST00000427526 UGCGQ16739 394 aa15.32■□□□□ 0.04
LIG1-202ENST00000427526 TNFAIP8L3Q5GJ75 292 aa15.32■□□□□ 0.04
LIG1-202ENST00000427526 CBWD2Q8IUF1 395 aa15.32■□□□□ 0.04
LIG1-202ENST00000427526 PPM1KQ8N3J5 372 aa15.32■□□□□ 0.04
LIG1-202ENST00000427526 ZNF564Q8TBZ8 553 aaPredicted RBP15.32■□□□□ 0.04
LIG1-202ENST00000427526 CABS1Q96KC9 395 aa15.32■□□□□ 0.04
LIG1-202ENST00000427526 BTBD6Q96KE9 485 aa15.32■□□□□ 0.04
LIG1-202ENST00000427526 ZNF317Q96PQ6 595 aaPredicted RBP15.32■□□□□ 0.04
LIG1-202ENST00000427526 IWS1Q96ST2 819 aa15.32■□□□□ 0.04
LIG1-202ENST00000427526 CEP89Q96ST8 783 aa15.32■□□□□ 0.04
LIG1-202ENST00000427526 NUP85Q9BW27 656 aa15.32■□□□□ 0.04
LIG1-202ENST00000427526 FAM129AQ9BZQ8 928 aa15.32■□□□□ 0.04
LIG1-202ENST00000427526 RNF146Q9NTX7 359 aa15.32■□□□□ 0.04
LIG1-202ENST00000427526 GOLGA8IPA6NC78 632 aa15.31■□□□□ 0.04
LIG1-202ENST00000427526 GOLGA8JA6NMD2 632 aa15.31■□□□□ 0.04
LIG1-202ENST00000427526 H0YHG0 523 aa15.31■□□□□ 0.04
LIG1-202ENST00000427526 ATP9AO75110 1047 aa15.31■□□□□ 0.04
LIG1-202ENST00000427526 RARAP10276 462 aa15.31■□□□□ 0.04
LIG1-202ENST00000427526 CYP11B1P15538 503 aa15.31■□□□□ 0.04
LIG1-202ENST00000427526 SNRNP35Q16560 246 aaKnown RBP15.31■□□□□ 0.04
LIG1-202ENST00000427526 EGFL6Q8IUX8 553 aa15.31■□□□□ 0.04
LIG1-202ENST00000427526 C4orf19Q8IY42 314 aa15.31■□□□□ 0.04
LIG1-202ENST00000427526 C12orf50Q8NA57 414 aaPredicted RBP15.31■□□□□ 0.04
LIG1-202ENST00000427526 CHMP6Q96FZ7 201 aa15.31■□□□□ 0.04
LIG1-202ENST00000427526 GTF3C4Q9UKN8 822 aa15.31■□□□□ 0.04
LIG1-202ENST00000427526 ANKRD63C9JTQ0 380 aa15.31■□□□□ 0.04
LIG1-202ENST00000427526 GRIN3BO60391 1043 aa15.31■□□□□ 0.04
LIG1-202ENST00000427526 SMTNP53814 917 aa15.31■□□□□ 0.04
LIG1-202ENST00000427526 SPRED3Q2MJR0 410 aa15.31■□□□□ 0.04
LIG1-202ENST00000427526 SWT1Q5T5J6 900 aaKnown RBP15.31■□□□□ 0.04
LIG1-202ENST00000427526 SNRNP48Q6IEG0 339 aaKnown RBP15.31■□□□□ 0.04
LIG1-202ENST00000427526 CHADLQ6NUI6 762 aa15.31■□□□□ 0.04
LIG1-202ENST00000427526 CCDC121Q6ZUS5 278 aa15.31■□□□□ 0.04
LIG1-202ENST00000427526 TRMT1LQ7Z2T5 733 aaKnown RBP15.31■□□□□ 0.04
LIG1-202ENST00000427526 CACNA2D3Q8IZS8 1091 aa15.31■□□□□ 0.04
LIG1-202ENST00000427526 REPS2Q8NFH8 660 aa15.31■□□□□ 0.04
LIG1-202ENST00000427526 PARD3BQ8TEW8 1205 aa15.31■□□□□ 0.04
LIG1-202ENST00000427526 ATXN2LQ8WWM7 1075 aaKnown RBP15.31■□□□□ 0.04
LIG1-202ENST00000427526 DDX1Q92499 740 aaKnown RBP15.31■□□□□ 0.04
LIG1-202ENST00000427526 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.31■□□□□ 0.042e-7■■■■■ 129.7
LIG1-202ENST00000427526 DNM1LO00429 736 aa15.3■□□□□ 0.04
LIG1-202ENST00000427526 RASSF9O75901 435 aa15.3■□□□□ 0.04
LIG1-202ENST00000427526 RARGP13631 454 aa15.3■□□□□ 0.04
LIG1-202ENST00000427526 CHN1P15882 459 aa15.3■□□□□ 0.04
LIG1-202ENST00000427526 GPC3P51654 580 aa15.3■□□□□ 0.04
LIG1-202ENST00000427526 CDR1P51861 262 aa15.3■□□□□ 0.04
LIG1-202ENST00000427526 IFI35P80217 286 aaPredicted RBP15.3■□□□□ 0.04
LIG1-202ENST00000427526 CDR2Q01850 454 aa15.3■□□□□ 0.04
LIG1-202ENST00000427526 ZNF568Q3ZCX4 644 aa15.3■□□□□ 0.04
LIG1-202ENST00000427526 C6orf118Q5T5N4 469 aa15.3■□□□□ 0.04
LIG1-202ENST00000427526 GKAP1Q5VSY0 366 aaPredicted RBP15.3■□□□□ 0.04
LIG1-202ENST00000427526 KRT39Q6A163 491 aa15.3■□□□□ 0.04
LIG1-202ENST00000427526 CYFIP1Q7L576 1253 aa15.3■□□□□ 0.04
LIG1-202ENST00000427526 RUNDC3BQ96NL0 473 aa15.3■□□□□ 0.04
LIG1-202ENST00000427526 PDCD2LQ9BRP1 358 aa15.3■□□□□ 0.04
LIG1-202ENST00000427526 PXMP2Q9NR77 195 aa15.3■□□□□ 0.04
LIG1-202ENST00000427526 TBC1D22BQ9NU19 505 aa15.3■□□□□ 0.04
LIG1-202ENST00000427526 UVRAGQ9P2Y5 699 aa15.3■□□□□ 0.04
LIG1-202ENST00000427526 MTRF1LQ9UGC7 380 aaKnown RBP15.3■□□□□ 0.04
LIG1-202ENST00000427526 SSC5DA1L4H1 1573 aa15.3■□□□□ 0.04
LIG1-202ENST00000427526 RIPK2O43353 540 aa15.3■□□□□ 0.04
LIG1-202ENST00000427526 DSG3P32926 999 aa15.3■□□□□ 0.04
LIG1-202ENST00000427526 ARHGEF16Q5VV41 709 aa15.3■□□□□ 0.04
LIG1-202ENST00000427526 CPLX4Q7Z7G2 160 aa15.3■□□□□ 0.04
LIG1-202ENST00000427526 TMEM161BQ8NDZ6 487 aa15.3■□□□□ 0.04
LIG1-202ENST00000427526 PSPC1Q8WXF1 523 aaKnown RBP15.3■□□□□ 0.04
LIG1-202ENST00000427526 AZI2Q9H6S1 392 aa15.3■□□□□ 0.04
LIG1-202ENST00000427526 LRRC19Q9H756 370 aa15.3■□□□□ 0.04
LIG1-202ENST00000427526 ACTR5Q9H9F9 607 aaPredicted RBP15.3■□□□□ 0.04
LIG1-202ENST00000427526 MTUS1Q9ULD2 1270 aa15.3■□□□□ 0.04
LIG1-202ENST00000427526 TBX20Q9UMR3 447 aa15.3■□□□□ 0.04
LIG1-202ENST00000427526 TP73O15350 636 aa15.3■□□□□ 0.04
LIG1-202ENST00000427526 AGTP01019 485 aa15.3■□□□□ 0.04
LIG1-202ENST00000427526 ADCY2Q08462 1091 aa15.3■□□□□ 0.04
LIG1-202ENST00000427526 SLMAPQ14BN4 828 aa15.3■□□□□ 0.04
LIG1-202ENST00000427526 TMEM132BQ14DG7 1078 aa15.3■□□□□ 0.04
LIG1-202ENST00000427526 LACTB2Q53H82 288 aaPredicted RBP15.3■□□□□ 0.04
LIG1-202ENST00000427526 CCDC105Q8IYK2 499 aa15.3■□□□□ 0.04
LIG1-202ENST00000427526 SLC17A8Q8NDX2 589 aa15.3■□□□□ 0.04
LIG1-202ENST00000427526 POP1Q99575 1024 aaKnown RBP15.3■□□□□ 0.04
LIG1-202ENST00000427526 TMEM8AQ9HCN3 771 aa15.3■□□□□ 0.04
LIG1-202ENST00000427526 MAP3K20Q9NYL2 800 aaKnown RBP15.3■□□□□ 0.04
LIG1-202ENST00000427526 ZNF214Q9UL59 606 aaPredicted RBP15.3■□□□□ 0.04
LIG1-202ENST00000427526 TLDC2A0PJX2 215 aa15.29■□□□□ 0.04
LIG1-202ENST00000427526 TESPA1A2RU30 521 aaPredicted RBP15.29■□□□□ 0.04
LIG1-202ENST00000427526 RGS16O15492 202 aaPredicted RBP15.29■□□□□ 0.04
LIG1-202ENST00000427526 SPOPO43791 374 aa15.29■□□□□ 0.04
LIG1-202ENST00000427526 USP2O75604 605 aaPredicted RBP15.29■□□□□ 0.04
LIG1-202ENST00000427526 CNGA1P29973 690 aa15.29■□□□□ 0.04
LIG1-202ENST00000427526 KCNJ1P48048 391 aa15.29■□□□□ 0.04
LIG1-202ENST00000427526 RWDD2BP57060 319 aa15.29■□□□□ 0.04
LIG1-202ENST00000427526 ANKRD20A8PQ5CZ79 823 aa15.29■□□□□ 0.04
LIG1-202ENST00000427526 CROCCP2Q86T23 111 aa15.29■□□□□ 0.04
LIG1-202ENST00000427526 SLCO2A1Q92959 643 aa15.29■□□□□ 0.04
LIG1-202ENST00000427526 ZNF653Q96CK0 615 aa15.29■□□□□ 0.04
LIG1-202ENST00000427526 C12orf42Q96LP6 360 aa15.29■□□□□ 0.04
LIG1-202ENST00000427526 FHDC1Q9C0D6 1143 aaPredicted RBP15.29■□□□□ 0.04
LIG1-202ENST00000427526 C19orf81C9J6K1 198 aa15.29■□□□□ 0.04
LIG1-202ENST00000427526 MAP4K3Q8IVH8 894 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms