RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 TRAPPC11Q7Z392 1133 aa9.02□□□□□ -0.97
USP54-203ENST00000418501 CCDC26Q8TAB7 109 aa9.02□□□□□ -0.97
USP54-203ENST00000418501 ACO2Q99798 780 aaKnown RBP9.02□□□□□ -0.97
USP54-203ENST00000418501 KIFC3Q9BVG8 833 aa9.02□□□□□ -0.97
USP54-203ENST00000418501 UVRAGQ9P2Y5 699 aa9.02□□□□□ -0.97
USP54-203ENST00000418501 ATP8B1O43520 1251 aa9.01□□□□□ -0.97
USP54-203ENST00000418501 KRT19P08727 400 aa9.01□□□□□ -0.97
USP54-203ENST00000418501 PAX3P23760 479 aa9.01□□□□□ -0.97
USP54-203ENST00000418501 HOXD13P35453 343 aa9.01□□□□□ -0.97
USP54-203ENST00000418501 RBP5P82980 135 aa9.01□□□□□ -0.97
USP54-203ENST00000418501 MCL1Q07820 350 aa9.01□□□□□ -0.97
USP54-203ENST00000418501 NCOA4Q13772 614 aa9.01□□□□□ -0.97
USP54-203ENST00000418501 GLE1Q53GS7 698 aaKnown RBP9.01□□□□□ -0.97
USP54-203ENST00000418501 HSP90B2PQ58FF3 399 aa9.01□□□□□ -0.97
USP54-203ENST00000418501 LRRC71Q8N4P6 559 aa9.01□□□□□ -0.97
USP54-203ENST00000418501 BORCS6Q96GS4 357 aa9.01□□□□□ -0.97
USP54-203ENST00000418501 SYNCQ9H7C4 482 aa9.01□□□□□ -0.97
USP54-203ENST00000418501 PLEKHA5Q9HAU0 1116 aa9.01□□□□□ -0.97
USP54-203ENST00000418501 CYP3A43Q9HB55 503 aa9.01□□□□□ -0.97
USP54-203ENST00000418501 DERAQ9Y315 318 aa9.01□□□□□ -0.97
USP54-203ENST00000418501 IGKV6-21A0A0C4DH24 114 aa9.01□□□□□ -0.97
USP54-203ENST00000418501 TMEM150BA6NC51 233 aa9.01□□□□□ -0.97
USP54-203ENST00000418501 CD4P01730 458 aa9.01□□□□□ -0.97
USP54-203ENST00000418501 CALB1P05937 261 aa9.01□□□□□ -0.97
USP54-203ENST00000418501 SKIP12755 728 aa9.01□□□□□ -0.97
USP54-203ENST00000418501 LACTBP83111 547 aaPredicted RBP9.01□□□□□ -0.97
USP54-203ENST00000418501 NFRKBQ6P4R8 1299 aa9.01□□□□□ -0.97
USP54-203ENST00000418501 SV2AQ7L0J3 742 aa9.01□□□□□ -0.97
USP54-203ENST00000418501 SAPCD2Q86UD0 394 aa9.01□□□□□ -0.97
USP54-203ENST00000418501 THNSL1Q8IYQ7 743 aa9.01□□□□□ -0.97
USP54-203ENST00000418501 IPO4Q8TEX9 1081 aaKnown RBP9.01□□□□□ -0.97
USP54-203ENST00000418501 NIF3L1Q9GZT8 377 aa9.01□□□□□ -0.97
USP54-203ENST00000418501 ARFGAP3Q9NP61 516 aa9.01□□□□□ -0.97
USP54-203ENST00000418501 KIAA1257Q9ULG3 409 aa9.01□□□□□ -0.97
USP54-203ENST00000418501 STRIP2Q9ULQ0 834 aa9.01□□□□□ -0.97
USP54-203ENST00000418501 LRRIQ3A6PVS8 624 aaPredicted RBP9.01□□□□□ -0.97
USP54-203ENST00000418501 CES2O00748 559 aa9.01□□□□□ -0.97
USP54-203ENST00000418501 DUSP11O75319 330 aaKnown RBP9.01□□□□□ -0.97
USP54-203ENST00000418501 LRRN2O75325 713 aa9.01□□□□□ -0.97
USP54-203ENST00000418501 STBD1O95210 358 aa9.01□□□□□ -0.97
USP54-203ENST00000418501 ZSCAN20P17040 1043 aaPredicted RBP9.01□□□□□ -0.97
USP54-203ENST00000418501 TAPT1Q6NXT6 567 aa9.01□□□□□ -0.97
USP54-203ENST00000418501 DAAM2Q86T65 1068 aa9.01□□□□□ -0.97
USP54-203ENST00000418501 IFNLR1Q8IU57 520 aaPredicted RBP9.01□□□□□ -0.97
USP54-203ENST00000418501 BSNDQ8WZ55 320 aa9.01□□□□□ -0.97
USP54-203ENST00000418501 ZNF560Q96MR9 790 aa9.01□□□□□ -0.97
USP54-203ENST00000418501 NAGPAQ9UK23 515 aa9.01□□□□□ -0.97
USP54-203ENST00000418501 CAPN15O75808 1086 aa9.01□□□□□ -0.97
USP54-203ENST00000418501 PNPLA4P41247 253 aa9.01□□□□□ -0.97
USP54-203ENST00000418501 ACOT2P49753 483 aa9.01□□□□□ -0.97
USP54-203ENST00000418501 MORN1Q5T089 497 aa9.01□□□□□ -0.97
USP54-203ENST00000418501 RPUSD2Q8IZ73 545 aaKnown RBP9.01□□□□□ -0.97
USP54-203ENST00000418501 TMEM35BQ8NCS4 154 aa9.01□□□□□ -0.97
USP54-203ENST00000418501 GADD45GIP1Q8TAE8 222 aaPredicted RBP9.01□□□□□ -0.97
USP54-203ENST00000418501 RUFY1Q96T51 708 aa9.01□□□□□ -0.97
USP54-203ENST00000418501 ZNF518BQ9C0D4 1074 aa9.01□□□□□ -0.97
USP54-203ENST00000418501 CTIFO43310 598 aaKnown RBP9□□□□□ -0.97
USP54-203ENST00000418501 GBP1P32455 592 aa9□□□□□ -0.97
USP54-203ENST00000418501 ZFYVE27Q5T4F4 411 aa9□□□□□ -0.97
USP54-203ENST00000418501 PAPD7Q5XG87 772 aaKnown RBP9□□□□□ -0.97
USP54-203ENST00000418501 RNF180Q86T96 592 aa9□□□□□ -0.97
USP54-203ENST00000418501 FZD8Q9H461 694 aa9□□□□□ -0.97
USP54-203ENST00000418501 FEZ2Q9UHY8 353 aaPredicted RBP9□□□□□ -0.97
USP54-203ENST00000418501 SPOPO43791 374 aa9□□□□□ -0.97
USP54-203ENST00000418501 C22orf31O95567 290 aa9□□□□□ -0.97
USP54-203ENST00000418501 TM4SF4P48230 202 aa9□□□□□ -0.97
USP54-203ENST00000418501 CLCN3P51790 818 aa9□□□□□ -0.97
USP54-203ENST00000418501 JAM2P57087 298 aa9□□□□□ -0.97
USP54-203ENST00000418501 CDR2Q01850 454 aa9□□□□□ -0.97
USP54-203ENST00000418501 CUL2Q13617 745 aa9□□□□□ -0.97
USP54-203ENST00000418501 TMEM132DQ14C87 1099 aa9□□□□□ -0.97
USP54-203ENST00000418501 FSCN1Q16658 493 aaKnown RBP9□□□□□ -0.97
USP54-203ENST00000418501 DEFB115Q30KQ5 88 aa9□□□□□ -0.97
USP54-203ENST00000418501 ZACNQ401N2 412 aa9□□□□□ -0.97
USP54-203ENST00000418501 C17orf99Q6UX52 265 aa9□□□□□ -0.97
USP54-203ENST00000418501 PCYT2Q99447 389 aa9□□□□□ -0.97
USP54-203ENST00000418501 FAM49AQ9H0Q0 323 aaPredicted RBP9□□□□□ -0.97
USP54-203ENST00000418501 IFT122Q9HBG6 1241 aa9□□□□□ -0.97
USP54-203ENST00000418501 PDGFCQ9NRA1 345 aa9□□□□□ -0.97
USP54-203ENST00000418501 ITGA11Q9UKX5 1188 aa9□□□□□ -0.97
USP54-203ENST00000418501 CNTNAP2Q9UHC6 1331 aa9□□□□□ -0.97
USP54-203ENST00000418501 NOL4O94818 638 aa9□□□□□ -0.97
USP54-203ENST00000418501 MOCS3O95396 460 aa9□□□□□ -0.97
USP54-203ENST00000418501 SMPD1P17405 629 aa9□□□□□ -0.97
USP54-203ENST00000418501 SLC1A1P43005 524 aa9□□□□□ -0.97
USP54-203ENST00000418501 PSMC4P43686 418 aa9□□□□□ -0.97
USP54-203ENST00000418501 NLRP11P59045 1033 aaKnown RBP9□□□□□ -0.97
USP54-203ENST00000418501 FAM47CQ5HY64 1035 aa9□□□□□ -0.97
USP54-203ENST00000418501 CEP128Q6ZU80 1094 aa9□□□□□ -0.97
USP54-203ENST00000418501 COPS5Q92905 334 aa9□□□□□ -0.97
USP54-203ENST00000418501 SLC38A7Q9NVC3 462 aa9□□□□□ -0.97
USP54-203ENST00000418501 GINS2Q9Y248 185 aa9□□□□□ -0.97
USP54-203ENST00000418501 A6NJR5 290 aa8.99□□□□□ -0.97
USP54-203ENST00000418501 CCDC188H7C350 402 aa8.99□□□□□ -0.97
USP54-203ENST00000418501 THAP12O43422 761 aa8.99□□□□□ -0.97
USP54-203ENST00000418501 B4GALT4O60513 344 aa8.99□□□□□ -0.97
USP54-203ENST00000418501 ARIH2O95376 493 aa8.99□□□□□ -0.97
USP54-203ENST00000418501 SNAI1O95863 264 aaPredicted RBP8.99□□□□□ -0.97
USP54-203ENST00000418501 ITGBL1O95965 494 aaPredicted RBP8.99□□□□□ -0.97
USP54-203ENST00000418501 ARHGAP25P42331 645 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms