RNA–Protein interactions for RNA: ENST00000395896.8

VPS13C-203, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 14,579 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-203ENST00000395896 ECM2O94769 699 aaPredicted RBP3.61□□□□□ -1.83
VPS13C-203ENST00000395896 ECEL1O95672 775 aa3.61□□□□□ -1.83
VPS13C-203ENST00000395896 AKR1A1P14550 325 aa3.61□□□□□ -1.83
VPS13C-203ENST00000395896 SLC12A3P55017 1021 aa3.61□□□□□ -1.83
VPS13C-203ENST00000395896 ELF2Q15723 593 aa3.61□□□□□ -1.83
VPS13C-203ENST00000395896 DNAJC21Q5F1R6 531 aaKnown RBP3.61□□□□□ -1.83
VPS13C-203ENST00000395896 NBPF12Q5TAG4 269 aaPredicted RBP3.61□□□□□ -1.83
VPS13C-203ENST00000395896 DPH6Q7L8W6 267 aa3.61□□□□□ -1.83
VPS13C-203ENST00000395896 TRIM42Q8IWZ5 723 aa3.61□□□□□ -1.83
VPS13C-203ENST00000395896 PPP1R14CQ8TAE6 165 aa3.61□□□□□ -1.83
VPS13C-203ENST00000395896 CAPZA3Q96KX2 299 aa3.61□□□□□ -1.83
VPS13C-203ENST00000395896 ZNF214Q9UL59 606 aaPredicted RBP3.61□□□□□ -1.83
VPS13C-203ENST00000395896 TRIM49BA6NDI0 452 aa3.61□□□□□ -1.83
VPS13C-203ENST00000395896 GIPC1O14908 333 aa3.61□□□□□ -1.83
VPS13C-203ENST00000395896 PSMD10O75832 226 aa3.61□□□□□ -1.83
VPS13C-203ENST00000395896 KRT10P13645 584 aa3.61□□□□□ -1.83
VPS13C-203ENST00000395896 TSPY1Q01534 308 aa3.61□□□□□ -1.83
VPS13C-203ENST00000395896 NNTQ13423 1086 aa3.61□□□□□ -1.83
VPS13C-203ENST00000395896 BOLA3Q53S33 107 aa3.61□□□□□ -1.83
VPS13C-203ENST00000395896 SH3D19Q5HYK7 790 aa3.61□□□□□ -1.83
VPS13C-203ENST00000395896 ZNF467Q7Z7K2 595 aaPredicted RBP3.61□□□□□ -1.83
VPS13C-203ENST00000395896 BANK1Q8NDB2 785 aa3.61□□□□□ -1.83
VPS13C-203ENST00000395896 UBIAD1Q9Y5Z9 338 aa3.61□□□□□ -1.83
VPS13C-203ENST00000395896 PSME4Q14997 1843 aa3.61□□□□□ -1.83
VPS13C-203ENST00000395896 UTRNP46939 3433 aa3.61□□□□□ -1.83
VPS13C-203ENST00000395896 GOLGA8KD6RF30 607 aa3.61□□□□□ -1.83
VPS13C-203ENST00000395896 PRPSAP2O60256 369 aa3.61□□□□□ -1.83
VPS13C-203ENST00000395896 RHOXF2BP0C7M4 288 aa3.61□□□□□ -1.83
VPS13C-203ENST00000395896 TMEM253P0C7T8 217 aa3.61□□□□□ -1.83
VPS13C-203ENST00000395896 ITGB5P18084 799 aa3.61□□□□□ -1.83
VPS13C-203ENST00000395896 FXR1P51114 621 aaKnown RBP eCLIP3.61□□□□□ -1.83
VPS13C-203ENST00000395896 ADCY2Q08462 1091 aa3.61□□□□□ -1.83
VPS13C-203ENST00000395896 SETDB1Q15047 1291 aa3.61□□□□□ -1.83
VPS13C-203ENST00000395896 NFE2Q16621 373 aaPredicted RBP3.61□□□□□ -1.83
VPS13C-203ENST00000395896 RSRC2Q7L4I2 434 aaKnown RBP3.61□□□□□ -1.83
VPS13C-203ENST00000395896 PTF1AQ7RTS3 328 aa3.61□□□□□ -1.83
VPS13C-203ENST00000395896 RHOXF2Q9BQY4 288 aa3.61□□□□□ -1.83
VPS13C-203ENST00000395896 FAM213AQ9BRX8 229 aa3.61□□□□□ -1.83
VPS13C-203ENST00000395896 PP2D1A8MPX8 630 aa3.61□□□□□ -1.83
VPS13C-203ENST00000395896 GPR182O15218 404 aa3.61□□□□□ -1.83
VPS13C-203ENST00000395896 STIP1P31948 543 aaKnown RBP3.61□□□□□ -1.83
VPS13C-203ENST00000395896 ZNF157P51786 506 aaPredicted RBP3.61□□□□□ -1.83
VPS13C-203ENST00000395896 RNASELQ05823 741 aaKnown RBP3.61□□□□□ -1.83
VPS13C-203ENST00000395896 FMR1Q06787 632 aaKnown RBP eCLIP3.61□□□□□ -1.83
VPS13C-203ENST00000395896 KRT71Q3SY84 523 aa3.61□□□□□ -1.83
VPS13C-203ENST00000395896 SGO2Q562F6 1265 aa3.61□□□□□ -1.83
VPS13C-203ENST00000395896 GKAP1Q5VSY0 366 aaPredicted RBP3.61□□□□□ -1.83
VPS13C-203ENST00000395896 CCDC110Q8TBZ0 833 aa3.61□□□□□ -1.83
VPS13C-203ENST00000395896 ZKSCAN4Q969J2 545 aaPredicted RBP3.61□□□□□ -1.83
VPS13C-203ENST00000395896 OPTNQ96CV9 577 aa3.61□□□□□ -1.83
VPS13C-203ENST00000395896 PRKAG2Q9UGJ0 569 aa3.61□□□□□ -1.83
VPS13C-203ENST00000395896 SCN4AP35499 1836 aa3.61□□□□□ -1.83
VPS13C-203ENST00000395896 A0A1B0GUA9 196 aa3.61□□□□□ -1.83
VPS13C-203ENST00000395896 HMGCRP04035 888 aa3.61□□□□□ -1.83
VPS13C-203ENST00000395896 GPC3P51654 580 aa3.61□□□□□ -1.83
VPS13C-203ENST00000395896 FCGRTP55899 365 aa3.61□□□□□ -1.83
VPS13C-203ENST00000395896 GRM1Q13255 1194 aa3.61□□□□□ -1.83
VPS13C-203ENST00000395896 GLB1LQ6UWU2 654 aa3.61□□□□□ -1.83
VPS13C-203ENST00000395896 EIF2AK3Q9NZJ5 1116 aaKnown RBP3.61□□□□□ -1.83
VPS13C-203ENST00000395896 UBQLN1Q9UMX0 589 aaKnown RBP3.61□□□□□ -1.83
VPS13C-203ENST00000395896 DICER1Q9UPY3 1922 aaKnown RBP3.61□□□□□ -1.83
VPS13C-203ENST00000395896 LRRC37AA6NMS7 1700 aa3.61□□□□□ -1.83
VPS13C-203ENST00000395896 FRMD3A2A2Y4 597 aa3.6□□□□□ -1.83
VPS13C-203ENST00000395896 F8VZ95 297 aa3.6□□□□□ -1.83
VPS13C-203ENST00000395896 NDUFAB1O14561 156 aa3.6□□□□□ -1.83
VPS13C-203ENST00000395896 RGS16O15492 202 aaPredicted RBP3.6□□□□□ -1.83
VPS13C-203ENST00000395896 CDH16O75309 829 aa3.6□□□□□ -1.83
VPS13C-203ENST00000395896 TCF7P36402 384 aaPredicted RBP3.6□□□□□ -1.83
VPS13C-203ENST00000395896 KPNA2P52292 529 aaKnown RBP3.6□□□□□ -1.83
VPS13C-203ENST00000395896 UBXN2AP68543 259 aa3.6□□□□□ -1.83
VPS13C-203ENST00000395896 NOP14P78316 857 aaKnown RBP3.6□□□□□ -1.83
VPS13C-203ENST00000395896 CCDC144BQ3MJ40 725 aa3.6□□□□□ -1.83
VPS13C-203ENST00000395896 C11orf63Q6NUN7 778 aa3.6□□□□□ -1.83
VPS13C-203ENST00000395896 KIAA0895Q8NCT3 520 aa3.6□□□□□ -1.83
VPS13C-203ENST00000395896 AFAP1L1Q8TED9 768 aa3.6□□□□□ -1.83
VPS13C-203ENST00000395896 DDX27Q96GQ7 796 aaKnown RBP3.6□□□□□ -1.83
VPS13C-203ENST00000395896 TRIM7Q9C029 511 aa3.6□□□□□ -1.83
VPS13C-203ENST00000395896 CNOT8Q9UFF9 292 aaKnown RBP3.6□□□□□ -1.83
VPS13C-203ENST00000395896 PCDHGC5Q9Y5F6 944 aa3.6□□□□□ -1.83
VPS13C-203ENST00000395896 C6orf222P0C671 652 aaPredicted RBP3.6□□□□□ -1.83
VPS13C-203ENST00000395896 MNAT1P51948 309 aa3.6□□□□□ -1.83
VPS13C-203ENST00000395896 CCZ1BP86790 482 aa3.6□□□□□ -1.83
VPS13C-203ENST00000395896 CCZ1P86791 482 aaPredicted RBP3.6□□□□□ -1.83
VPS13C-203ENST00000395896 CDR2Q01850 454 aa3.6□□□□□ -1.83
VPS13C-203ENST00000395896 P3H1Q32P28 736 aa3.6□□□□□ -1.83
VPS13C-203ENST00000395896 WDR49Q8IV35 697 aa3.6□□□□□ -1.83
VPS13C-203ENST00000395896 SIX6OS1Q8N1H7 587 aa3.6□□□□□ -1.83
VPS13C-203ENST00000395896 ALKBH8Q96BT7 664 aaKnown RBP3.6□□□□□ -1.83
VPS13C-203ENST00000395896 TBCBQ99426 244 aa3.6□□□□□ -1.83
VPS13C-203ENST00000395896 GPBP1L1Q9HC44 474 aaPredicted RBP3.6□□□□□ -1.83
VPS13C-203ENST00000395896 ASCC3Q8N3C0 2202 aaKnown RBP3.6□□□□□ -1.83
VPS13C-203ENST00000395896 PJA2O43164 708 aa3.6□□□□□ -1.83
VPS13C-203ENST00000395896 TADA3O75528 432 aa3.6□□□□□ -1.83
VPS13C-203ENST00000395896 SLC2A3P11169 496 aa3.6□□□□□ -1.83
VPS13C-203ENST00000395896 DNAJB2P25686 324 aa3.6□□□□□ -1.83
VPS13C-203ENST00000395896 PPARGP37231 505 aaPredicted RBP3.6□□□□□ -1.83
VPS13C-203ENST00000395896 COPS2P61201 443 aa3.6□□□□□ -1.83
VPS13C-203ENST00000395896 SMARCB1Q12824 385 aa3.6□□□□□ -1.83
VPS13C-203ENST00000395896 COG1Q8WTW3 980 aa3.6□□□□□ -1.83
VPS13C-203ENST00000395896 SLC35C1Q96A29 364 aa3.6□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms