RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 MPIG6BO95866 241 aa0.24□□□□□ -2.37
RNU6-540P-201ENST00000384622 APEX1P27695 318 aaKnown RBP0.24□□□□□ -2.37
RNU6-540P-201ENST00000384622 IL1R2P27930 398 aa0.24□□□□□ -2.37
RNU6-540P-201ENST00000384622 ERVFC1-1P60608 527 aa0.24□□□□□ -2.37
RNU6-540P-201ENST00000384622 IRX6P78412 446 aaPredicted RBP0.24□□□□□ -2.37
RNU6-540P-201ENST00000384622 POU5F1BQ06416 359 aa0.24□□□□□ -2.37
RNU6-540P-201ENST00000384622 CYP4F3Q08477 520 aa0.24□□□□□ -2.37
RNU6-540P-201ENST00000384622 LMAN2Q12907 356 aa0.24□□□□□ -2.37
RNU6-540P-201ENST00000384622 EIF4EBP2Q13542 120 aaPredicted RBP0.24□□□□□ -2.37
RNU6-540P-201ENST00000384622 SF3B3Q15393 1217 aaKnown RBP0.24□□□□□ -2.37
RNU6-540P-201ENST00000384622 MEI1Q5TIA1 1274 aa0.24□□□□□ -2.37
RNU6-540P-201ENST00000384622 KHDRBS2Q5VWX1 349 aaKnown RBP0.24□□□□□ -2.37
RNU6-540P-201ENST00000384622 METRNLQ641Q3 311 aa0.24□□□□□ -2.37
RNU6-540P-201ENST00000384622 DMKNQ6E0U4 476 aaPredicted RBP0.24□□□□□ -2.37
RNU6-540P-201ENST00000384622 GTF2IRD2BQ6EKJ0 949 aa0.24□□□□□ -2.37
RNU6-540P-201ENST00000384622 KIAA1211LQ6NV74 962 aa0.24□□□□□ -2.37
RNU6-540P-201ENST00000384622 GTF2IRD2Q86UP8 949 aa0.24□□□□□ -2.37
RNU6-540P-201ENST00000384622 SERINC5Q86VE9 423 aa0.24□□□□□ -2.37
RNU6-540P-201ENST00000384622 RELL1Q8IUW5 271 aa0.24□□□□□ -2.37
RNU6-540P-201ENST00000384622 IQCF1Q8N6M8 205 aa0.24□□□□□ -2.37
RNU6-540P-201ENST00000384622 ZNF548Q8NEK5 533 aaPredicted RBP0.24□□□□□ -2.37
RNU6-540P-201ENST00000384622 OR56A1Q8NGH5 318 aa0.24□□□□□ -2.37
RNU6-540P-201ENST00000384622 FRMD6Q96NE9 622 aa0.24□□□□□ -2.37
RNU6-540P-201ENST00000384622 TMEM74Q96NL1 305 aa0.24□□□□□ -2.37
RNU6-540P-201ENST00000384622 LRRC3Q9BY71 257 aa0.24□□□□□ -2.37
RNU6-540P-201ENST00000384622 TRIM55Q9BYV6 548 aa0.24□□□□□ -2.37
RNU6-540P-201ENST00000384622 ZNF408Q9H9D4 720 aa0.24□□□□□ -2.37
RNU6-540P-201ENST00000384622 CD93Q9NPY3 652 aa0.24□□□□□ -2.37
RNU6-540P-201ENST00000384622 FAM120CQ9NX05 1096 aaKnown RBP0.24□□□□□ -2.37
RNU6-540P-201ENST00000384622 FAM83GA6ND36 823 aa0.23□□□□□ -2.37
RNU6-540P-201ENST00000384622 NRP1O14786 923 aa0.23□□□□□ -2.37
RNU6-540P-201ENST00000384622 TREHO43280 583 aa0.23□□□□□ -2.37
RNU6-540P-201ENST00000384622 MTSS1O43312 755 aa0.23□□□□□ -2.37
RNU6-540P-201ENST00000384622 APOHP02749 345 aaPredicted RBP0.23□□□□□ -2.37
RNU6-540P-201ENST00000384622 PRB2P02812 416 aaPredicted RBP0.23□□□□□ -2.37
RNU6-540P-201ENST00000384622 KRT9P35527 623 aa0.23□□□□□ -2.37
RNU6-540P-201ENST00000384622 ECI1P42126 302 aa0.23□□□□□ -2.37
RNU6-540P-201ENST00000384622 WNT3AP56704 352 aa0.23□□□□□ -2.37
RNU6-540P-201ENST00000384622 MRPL49Q13405 166 aaKnown RBP0.23□□□□□ -2.37
RNU6-540P-201ENST00000384622 IZUMO4Q1ZYL8 232 aa0.23□□□□□ -2.37
RNU6-540P-201ENST00000384622 GNPTABQ3T906 1256 aa0.23□□□□□ -2.37
RNU6-540P-201ENST00000384622 ACBD5Q5T8D3 534 aaPredicted RBP0.23□□□□□ -2.37
RNU6-540P-201ENST00000384622 AGAP9Q5VTM2 703 aa0.23□□□□□ -2.37
RNU6-540P-201ENST00000384622 PMS2CLQ68D20 193 aa0.23□□□□□ -2.37
RNU6-540P-201ENST00000384622 UNC5AQ6ZN44 842 aa0.23□□□□□ -2.37
RNU6-540P-201ENST00000384622 MAMDC2Q7Z304 686 aaPredicted RBP0.23□□□□□ -2.37
RNU6-540P-201ENST00000384622 KRT77Q7Z794 578 aa0.23□□□□□ -2.37
RNU6-540P-201ENST00000384622 RBM23Q86U06 439 aaKnown RBP0.23□□□□□ -2.37
RNU6-540P-201ENST00000384622 KRTAP7-1Q8IUC3 87 aa0.23□□□□□ -2.37
RNU6-540P-201ENST00000384622 PPIL6Q8IXY8 311 aa0.23□□□□□ -2.37
RNU6-540P-201ENST00000384622 COLGALT2Q8IYK4 626 aa0.23□□□□□ -2.37
RNU6-540P-201ENST00000384622 FBXL14Q8N1E6 418 aa0.23□□□□□ -2.37
RNU6-540P-201ENST00000384622 WDSUB1Q8N9V3 476 aa0.23□□□□□ -2.37
RNU6-540P-201ENST00000384622 C8orf58Q8NAV2 365 aa0.23□□□□□ -2.37
RNU6-540P-201ENST00000384622 PPP1R14CQ8TAE6 165 aa0.23□□□□□ -2.37
RNU6-540P-201ENST00000384622 NACC2Q96BF6 587 aa0.23□□□□□ -2.37
RNU6-540P-201ENST00000384622 IL17RAQ96F46 866 aa0.23□□□□□ -2.37
RNU6-540P-201ENST00000384622 NEU1Q99519 415 aa0.23□□□□□ -2.37
RNU6-540P-201ENST00000384622 KCNJ15Q99712 375 aa0.23□□□□□ -2.37
RNU6-540P-201ENST00000384622 ENKD1Q9H0I2 346 aa0.23□□□□□ -2.37
RNU6-540P-201ENST00000384622 NKX2-4Q9H2Z4 354 aa0.23□□□□□ -2.37
RNU6-540P-201ENST00000384622 TCF7L2Q9NQB0 619 aa0.23□□□□□ -2.37
RNU6-540P-201ENST00000384622 ZIM2Q9NZV7 527 aa0.23□□□□□ -2.37
RNU6-540P-201ENST00000384622 KIAA1522Q9P206 1035 aaPredicted RBP0.23□□□□□ -2.37
RNU6-540P-201ENST00000384622 EMC9Q9Y3B6 208 aa0.23□□□□□ -2.37
RNU6-540P-201ENST00000384622 PRAMEF25A6NGN4 478 aa0.22□□□□□ -2.37
RNU6-540P-201ENST00000384622 ADM5C9JUS6 153 aa0.22□□□□□ -2.37
RNU6-540P-201ENST00000384622 NOP56O00567 594 aaKnown RBP0.22□□□□□ -2.37
RNU6-540P-201ENST00000384622 FCHO1O14526 889 aa0.22□□□□□ -2.37
RNU6-540P-201ENST00000384622 MAFO75444 373 aaPredicted RBP0.22□□□□□ -2.37
RNU6-540P-201ENST00000384622 CRLF1O75462 422 aa0.22□□□□□ -2.37
RNU6-540P-201ENST00000384622 RNF224P0DH78 156 aa0.22□□□□□ -2.37
RNU6-540P-201ENST00000384622 CASRP41180 1078 aa0.22□□□□□ -2.37
RNU6-540P-201ENST00000384622 GJA8P48165 433 aa0.22□□□□□ -2.37
RNU6-540P-201ENST00000384622 ZNF165P49910 485 aa0.22□□□□□ -2.37
RNU6-540P-201ENST00000384622 VAV2P52735 878 aa0.22□□□□□ -2.37
RNU6-540P-201ENST00000384622 ANTXR2P58335 489 aa0.22□□□□□ -2.37
RNU6-540P-201ENST00000384622 ATP2B2Q01814 1243 aa0.22□□□□□ -2.37
RNU6-540P-201ENST00000384622 LTBQ06643 244 aa0.22□□□□□ -2.37
RNU6-540P-201ENST00000384622 TESK1Q15569 626 aa0.22□□□□□ -2.37
RNU6-540P-201ENST00000384622 TSHZ3Q63HK5 1081 aa0.22□□□□□ -2.37
RNU6-540P-201ENST00000384622 PHLDB3Q6NSJ2 640 aa0.22□□□□□ -2.37
RNU6-540P-201ENST00000384622 CEP85Q6P2H3 762 aa0.22□□□□□ -2.37
RNU6-540P-201ENST00000384622 LBX2Q6XYB7 198 aa0.22□□□□□ -2.37
RNU6-540P-201ENST00000384622 NLGN4XQ8N0W4 816 aa0.22□□□□□ -2.37
RNU6-540P-201ENST00000384622 MUC20Q8N307 709 aaPredicted RBP0.22□□□□□ -2.37
RNU6-540P-201ENST00000384622 CAMKK1Q8N5S9 505 aa0.22□□□□□ -2.37
RNU6-540P-201ENST00000384622 CALML6Q8TD86 181 aa0.22□□□□□ -2.37
RNU6-540P-201ENST00000384622 PHACTR3Q96KR7 559 aa0.22□□□□□ -2.37
RNU6-540P-201ENST00000384622 WDR92Q96MX6 357 aa0.22□□□□□ -2.37
RNU6-540P-201ENST00000384622 FAM118BQ9BPY3 351 aa0.22□□□□□ -2.37
RNU6-540P-201ENST00000384622 C6orf106Q9H6K1 298 aaPredicted RBP0.22□□□□□ -2.37
RNU6-540P-201ENST00000384622 PPARGC1AQ9UBK2 798 aaKnown RBP0.22□□□□□ -2.37
RNU6-540P-201ENST00000384622 HEY2Q9UBP5 337 aa0.22□□□□□ -2.37
RNU6-540P-201ENST00000384622 PCDHGB1Q9Y5G3 927 aa0.22□□□□□ -2.37
RNU6-540P-201ENST00000384622 HS3ST3B1Q9Y662 390 aa0.22□□□□□ -2.37
RNU6-540P-201ENST00000384622 NEBP20929 6669 aa0.22□□□□□ -2.37
RNU6-540P-201ENST00000384622 PRRC2AP48634 2157 aaKnown RBP0.21□□□□□ -2.38
RNU6-540P-201ENST00000384622 ZG16O60844 167 aa0.21□□□□□ -2.38
RNU6-540P-201ENST00000384622 TTLL1O95922 423 aa0.21□□□□□ -2.38
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms