RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 CDK17Q00537 523 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 KDSRQ06136 332 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 BYSLQ13895 437 aaKnown RBP6.94□□□□□ -1.3
SMC1A-202ENST00000375340 MAP7Q14244 749 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 KYNUQ16719 465 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 CAPRIN2Q6IMN6 1127 aaKnown RBP6.94□□□□□ -1.3
SMC1A-202ENST00000375340 RHOT1Q8IXI2 618 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 PDIK1LQ8N165 341 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 DNAAF3Q8N9W5 541 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 FBXL13Q8NEE6 735 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 PNMA5Q96PV4 448 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 RTFDC1Q9BY42 306 aaPredicted RBP6.94□□□□□ -1.3
SMC1A-202ENST00000375340 MST1RQ04912 1400 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 WDR64B1ANS9 1081 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 EAPPQ56P03 285 aaPredicted RBP6.94□□□□□ -1.3
SMC1A-202ENST00000375340 PRR5LQ6MZQ0 368 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 RBAKQ9NYW8 714 aaPredicted RBP6.94□□□□□ -1.3
SMC1A-202ENST00000375340 ALG6Q9Y672 507 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 TMEM253P0C7T8 217 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 SKIP12755 728 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 DBN1Q16643 649 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 HIF1AQ16665 826 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 CCDC125Q86Z20 511 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 ZSWIM1Q9BR11 485 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 CENPKQ9BS16 269 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 PARVAQ9NVD7 372 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 ENO4A6NNW6 628 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 RFX1P22670 979 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 CHRNA5P30532 468 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 ARFIP2P53365 341 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 SOX10P56693 466 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 ZNF844Q08AG5 666 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 ASPHQ12797 758 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 MTMR2Q13614 643 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 LRRC36Q1X8D7 754 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 KLHL38Q2WGJ6 581 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 CCDC33Q8N5R6 958 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 GBP7Q8N8V2 638 aaPredicted RBP6.94□□□□□ -1.3
SMC1A-202ENST00000375340 MCUQ8NE86 351 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 HSD3B7Q9H2F3 369 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 XPO7Q9UIA9 1087 aaKnown RBP6.94□□□□□ -1.3
SMC1A-202ENST00000375340 REXO2Q9Y3B8 237 aaKnown RBP6.94□□□□□ -1.3
SMC1A-202ENST00000375340 MYH7P12883 1935 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 RALAP11233 206 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 AP1B1Q10567 949 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 OVGP1Q12889 678 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 EDRF1Q3B7T1 1238 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 TRIM42Q8IWZ5 723 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 EDEM3Q9BZQ6 932 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 TACC3Q9Y6A5 838 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 HSPA4LO95757 839 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 LMNAP02545 664 aaKnown RBP6.93□□□□□ -1.3
SMC1A-202ENST00000375340 SHBGP04278 402 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 SEMA3FQ13275 785 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 SLC12A1Q13621 1099 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 TRADDQ15628 312 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 PCGF5Q86SE9 256 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 NLGN1Q8N2Q7 840 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 HDAC11Q96DB2 347 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 TTC1Q99614 292 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 GPRC5CQ9NQ84 441 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 DDX52Q9Y2R4 599 aaKnown RBP eCLIP6.93□□□□□ -1.3
SMC1A-202ENST00000375340 NEU2Q9Y3R4 380 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 BAZ2AQ9UIF9 1905 aaKnown RBP6.93□□□□□ -1.3
SMC1A-202ENST00000375340 PFASO15067 1338 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 ADORA2BP29275 332 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 CPA2P48052 419 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 EPHB1P54762 984 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 COPS2P61201 443 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 PRPSAP1Q14558 356 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 NGRNQ9NPE2 291 aaKnown RBP6.93□□□□□ -1.3
SMC1A-202ENST00000375340 POLLQ9UGP5 575 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 NAGPAQ9UK23 515 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 ROBO1Q9Y6N7 1651 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 FOXN3O00409 490 aaPredicted RBP6.93□□□□□ -1.3
SMC1A-202ENST00000375340 EIF3DO15371 548 aaKnown RBP eCLIP6.93□□□□□ -1.3
SMC1A-202ENST00000375340 CREB3O43889 395 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 PSMC5P62195 406 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 ERVK-9P63128 1117 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 MAP3K21Q5TCX8 1036 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 LVRNQ6Q4G3 990 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 KCNK18Q7Z418 384 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 AGBL1Q96MI9 1066 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 FAM129AQ9BZQ8 928 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 RPAP3Q9H6T3 665 aaPredicted RBP6.93□□□□□ -1.3
SMC1A-202ENST00000375340 ATP6V1G2O95670 118 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 AARSP49588 968 aaKnown RBP eCLIP6.93□□□□□ -1.32e-6■■□□□ 12.4
SMC1A-202ENST00000375340 FAM149B1Q96BN6 582 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 KLC2Q9H0B6 622 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 MYH2Q9UKX2 1941 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 F8VZ95 297 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 ZBTB39O15060 712 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 FOXP2O15409 715 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 GRAP2O75791 330 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 AKAP3O75969 853 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 UBTFL6P0CB48 400 aaPredicted RBP6.93□□□□□ -1.3
SMC1A-202ENST00000375340 CDC25CP30307 473 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 ATXN3P54252 364 aaPredicted RBP6.93□□□□□ -1.3
SMC1A-202ENST00000375340 NR1H3Q13133 447 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 CEP55Q53EZ4 464 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms