RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 JCADQ9P266 1359 aa5.67□□□□□ -1.5
USP48-202ENST00000374730 TNS2Q63HR2 1409 aa5.66□□□□□ -1.5
USP48-202ENST00000374730 HIP1O00291 1037 aa5.66□□□□□ -1.5
USP48-202ENST00000374730 CYP27B1O15528 508 aa5.66□□□□□ -1.5
USP48-202ENST00000374730 SNRPA1P09661 255 aaKnown RBP5.66□□□□□ -1.5
USP48-202ENST00000374730 APEX1P27695 318 aaKnown RBP5.66□□□□□ -1.5
USP48-202ENST00000374730 ALDH6A1Q02252 535 aaKnown RBP5.66□□□□□ -1.5
USP48-202ENST00000374730 NEXNQ0ZGT2 675 aa5.66□□□□□ -1.5
USP48-202ENST00000374730 MAP3K12Q12852 859 aa5.66□□□□□ -1.5
USP48-202ENST00000374730 DUSP8Q13202 625 aa5.66□□□□□ -1.5
USP48-202ENST00000374730 SQSTM1Q13501 440 aa5.66□□□□□ -1.5
USP48-202ENST00000374730 MOGSQ13724 837 aa5.66□□□□□ -1.5
USP48-202ENST00000374730 TMEM132BQ14DG7 1078 aa5.66□□□□□ -1.5
USP48-202ENST00000374730 USP30Q70CQ3 517 aa5.66□□□□□ -1.5
USP48-202ENST00000374730 LARP4Q71RC2 724 aaKnown RBP eCLIP5.66□□□□□ -1.5
USP48-202ENST00000374730 POLNQ7Z5Q5 900 aa5.66□□□□□ -1.5
USP48-202ENST00000374730 SPRED1Q7Z699 444 aa5.66□□□□□ -1.5
USP48-202ENST00000374730 PALM2Q8IXS6 379 aa5.66□□□□□ -1.5
USP48-202ENST00000374730 TTC5Q8N0Z6 440 aa5.66□□□□□ -1.5
USP48-202ENST00000374730 ZGPATQ8N5A5 531 aaKnown RBP5.66□□□□□ -1.5
USP48-202ENST00000374730 CHST14Q8NCH0 376 aa5.66□□□□□ -1.5
USP48-202ENST00000374730 RUFY2Q8WXA3 655 aa5.66□□□□□ -1.5
USP48-202ENST00000374730 E2F7Q96AV8 911 aa5.66□□□□□ -1.5
USP48-202ENST00000374730 EVI5LQ96CN4 794 aa5.66□□□□□ -1.5
USP48-202ENST00000374730 FOXB1Q99853 325 aa5.66□□□□□ -1.5
USP48-202ENST00000374730 KIAA1683Q9H0B3 1180 aa5.66□□□□□ -1.5
USP48-202ENST00000374730 OR10A2Q9H208 303 aa5.66□□□□□ -1.5
USP48-202ENST00000374730 IL25Q9H293 177 aa5.66□□□□□ -1.5
USP48-202ENST00000374730 BICC1Q9H694 974 aaKnown RBP5.66□□□□□ -1.5
USP48-202ENST00000374730 GRPEL1Q9HAV7 217 aa5.66□□□□□ -1.5
USP48-202ENST00000374730 ITGB4P16144 1822 aa5.66□□□□□ -1.5
USP48-202ENST00000374730 WDR17Q8IZU2 1322 aa5.66□□□□□ -1.5
USP48-202ENST00000374730 PCDH11XQ9BZA7 1347 aa5.66□□□□□ -1.5
USP48-202ENST00000374730 PCDH11YQ9BZA8 1340 aa5.66□□□□□ -1.5
USP48-202ENST00000374730 LRP6O75581 1613 aa5.66□□□□□ -1.5
USP48-202ENST00000374730 MATN2O00339 956 aa5.65□□□□□ -1.5
USP48-202ENST00000374730 IFIT2P09913 472 aaKnown RBP5.65□□□□□ -1.5
USP48-202ENST00000374730 COMTP21964 271 aa5.65□□□□□ -1.5
USP48-202ENST00000374730 MEOX1P50221 254 aa5.65□□□□□ -1.5
USP48-202ENST00000374730 HSPA2P54652 639 aa5.65□□□□□ -1.5
USP48-202ENST00000374730 G3BP1Q13283 466 aaKnown RBP eCLIP5.65□□□□□ -1.5
USP48-202ENST00000374730 SLC39A6Q13433 755 aa5.65□□□□□ -1.5
USP48-202ENST00000374730 PKP1Q13835 747 aa5.65□□□□□ -1.5
USP48-202ENST00000374730 GCKRQ14397 625 aa5.65□□□□□ -1.5
USP48-202ENST00000374730 PCOLCEQ15113 449 aa5.65□□□□□ -1.5
USP48-202ENST00000374730 TBR1Q16650 682 aa5.65□□□□□ -1.5
USP48-202ENST00000374730 RABL6Q3YEC7 729 aaPredicted RBP5.65□□□□□ -1.5
USP48-202ENST00000374730 COPS6Q7L5N1 327 aa5.65□□□□□ -1.5
USP48-202ENST00000374730 RTN4RL1Q86UN2 441 aaPredicted RBP5.65□□□□□ -1.5
USP48-202ENST00000374730 RTKN2Q8IZC4 609 aa5.65□□□□□ -1.5
USP48-202ENST00000374730 FUKQ8N0W3 1084 aa5.65□□□□□ -1.5
USP48-202ENST00000374730 CFHR4Q92496 578 aa5.65□□□□□ -1.5
USP48-202ENST00000374730 EDAQ92838 391 aa5.65□□□□□ -1.5
USP48-202ENST00000374730 FOXRED1Q96CU9 486 aaPredicted RBP5.65□□□□□ -1.5
USP48-202ENST00000374730 ZNF496Q96IT1 587 aaPredicted RBP5.65□□□□□ -1.5
USP48-202ENST00000374730 TTC14Q96N46 770 aa5.65□□□□□ -1.5
USP48-202ENST00000374730 CLUHP3Q96NS8 147 aa5.65□□□□□ -1.5
USP48-202ENST00000374730 DPYSL5Q9BPU6 564 aa5.65□□□□□ -1.5
USP48-202ENST00000374730 TM6SF1Q9BZW5 370 aa5.65□□□□□ -1.5
USP48-202ENST00000374730 DIAPH3Q9NSV4 1193 aa5.65□□□□□ -1.5
USP48-202ENST00000374730 LMBRD1Q9NUN5 540 aa5.65□□□□□ -1.5
USP48-202ENST00000374730 SAMD15Q9P1V8 674 aa5.65□□□□□ -1.5
USP48-202ENST00000374730 PUF60Q9UHX1 559 aaKnown RBP5.65□□□□□ -1.5
USP48-202ENST00000374730 CDC42EP3Q9UKI2 254 aa5.65□□□□□ -1.5
USP48-202ENST00000374730 SNX14Q9Y5W7 946 aa5.65□□□□□ -1.5
USP48-202ENST00000374730 MYH3P11055 1940 aa5.65□□□□□ -1.51
USP48-202ENST00000374730 MYH7P12883 1935 aa5.65□□□□□ -1.51
USP48-202ENST00000374730 MED23Q9ULK4 1368 aa5.65□□□□□ -1.51
USP48-202ENST00000374730 TNKS1BP1Q9C0C2 1729 aaKnown RBP5.65□□□□□ -1.51
USP48-202ENST00000374730 COL14A1Q05707 1796 aaKnown RBP5.65□□□□□ -1.51
USP48-202ENST00000374730 LAMA4Q16363 1823 aa5.64□□□□□ -1.51
USP48-202ENST00000374730 COL22A1Q8NFW1 1626 aaPredicted RBP5.64□□□□□ -1.51
USP48-202ENST00000374730 TLDC2A0PJX2 215 aa5.64□□□□□ -1.51
USP48-202ENST00000374730 PMS2P1A4D2B8 440 aa5.64□□□□□ -1.51
USP48-202ENST00000374730 ERVV-2B6SEH9 535 aa5.64□□□□□ -1.51
USP48-202ENST00000374730 M0R2C6 588 aa5.64□□□□□ -1.51
USP48-202ENST00000374730 CDC14BO60729 498 aa5.64□□□□□ -1.51
USP48-202ENST00000374730 DNAJC8O75937 253 aaPredicted RBP5.64□□□□□ -1.51
USP48-202ENST00000374730 MBD3O95983 291 aa5.64□□□□□ -1.51
USP48-202ENST00000374730 TACR2P21452 398 aa5.64□□□□□ -1.51
USP48-202ENST00000374730 RPS19P39019 145 aaKnown RBP5.64□□□□□ -1.51
USP48-202ENST00000374730 RFX5P48382 616 aaPredicted RBP5.64□□□□□ -1.51
USP48-202ENST00000374730 PRKD1Q15139 912 aaPredicted RBP5.64□□□□□ -1.51
USP48-202ENST00000374730 SPDYAQ5MJ70 313 aa5.64□□□□□ -1.51
USP48-202ENST00000374730 CRIP3Q6Q6R5 217 aa5.64□□□□□ -1.51
USP48-202ENST00000374730 BRINP3Q76B58 766 aa5.64□□□□□ -1.51
USP48-202ENST00000374730 FILIP1Q7Z7B0 1213 aa5.64□□□□□ -1.51
USP48-202ENST00000374730 AACSQ86V21 672 aa5.64□□□□□ -1.51
USP48-202ENST00000374730 SYNPOQ8N3V7 929 aa5.64□□□□□ -1.51
USP48-202ENST00000374730 SH3TC2Q8TF17 1288 aa5.64□□□□□ -1.51
USP48-202ENST00000374730 DDX17Q92841 729 aaKnown RBP5.64□□□□□ -1.51
USP48-202ENST00000374730 EAF2Q96CJ1 260 aaPredicted RBP5.64□□□□□ -1.51
USP48-202ENST00000374730 MYD88Q99836 296 aa5.64□□□□□ -1.51
USP48-202ENST00000374730 ACSS2Q9NR19 701 aa5.64□□□□□ -1.51
USP48-202ENST00000374730 TMEM260Q9NX78 707 aa5.64□□□□□ -1.51
USP48-202ENST00000374730 PA2G4Q9UQ80 394 aaKnown RBP5.64□□□□□ -1.51
USP48-202ENST00000374730 VWA7Q9Y334 891 aa5.64□□□□□ -1.51
USP48-202ENST00000374730 DDX49Q9Y6V7 483 aaKnown RBP5.64□□□□□ -1.51
USP48-202ENST00000374730 CCDC171Q6TFL3 1326 aa5.64□□□□□ -1.51
USP48-202ENST00000374730 RPAP1Q9BWH6 1393 aaPredicted RBP5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms