RNA–Protein interactions for RNA: ENST00000372216.8

COL4A6-202, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-202ENST00000372216 POLR3CQ9BUI4 534 aaPredicted RBP10.37□□□□□ -0.75
COL4A6-202ENST00000372216 E2F6O75461 281 aa10.37□□□□□ -0.75
COL4A6-202ENST00000372216 FTLP02792 175 aaPredicted RBP10.37□□□□□ -0.75
COL4A6-202ENST00000372216 EFCAB12Q6NXP0 572 aa10.37□□□□□ -0.75
COL4A6-202ENST00000372216 GUF1Q8N442 669 aaKnown RBP10.37□□□□□ -0.75
COL4A6-202ENST00000372216 TTC13Q8NBP0 860 aa10.37□□□□□ -0.75
COL4A6-202ENST00000372216 C6orf203Q9P0P8 240 aaPredicted RBP10.37□□□□□ -0.75
COL4A6-202ENST00000372216 SYNGAP1Q96PV0 1343 aa10.37□□□□□ -0.75
COL4A6-202ENST00000372216 ZRANB2O95218 330 aaKnown RBP eCLIP10.37□□□□□ -0.75
COL4A6-202ENST00000372216 SYTL3Q4VX76 610 aa10.37□□□□□ -0.75
COL4A6-202ENST00000372216 HPS3Q969F9 1004 aa10.37□□□□□ -0.75
COL4A6-202ENST00000372216 REEP2Q9BRK0 252 aa10.37□□□□□ -0.75
COL4A6-202ENST00000372216 KLF15Q9UIH9 416 aa10.37□□□□□ -0.75
COL4A6-202ENST00000372216 PCDHB7Q9Y5E2 793 aa10.37□□□□□ -0.75
COL4A6-202ENST00000372216 E2F8A0AVK6 867 aa10.37□□□□□ -0.75
COL4A6-202ENST00000372216 PRRG1O14668 218 aa10.37□□□□□ -0.75
COL4A6-202ENST00000372216 MAGEB2O15479 319 aa10.37□□□□□ -0.75
COL4A6-202ENST00000372216 PAPOLAP51003 745 aaKnown RBP10.37□□□□□ -0.75
COL4A6-202ENST00000372216 TAAR1Q96RJ0 339 aa10.37□□□□□ -0.75
COL4A6-202ENST00000372216 FMO2Q99518 471 aa10.37□□□□□ -0.75
COL4A6-202ENST00000372216 TRIM62Q9BVG3 475 aa10.37□□□□□ -0.75
COL4A6-202ENST00000372216 DHX35Q9H5Z1 703 aaKnown RBP10.37□□□□□ -0.75
COL4A6-202ENST00000372216 SMYD3Q9H7B4 428 aa10.37□□□□□ -0.75
COL4A6-202ENST00000372216 MEGF6O75095 1541 aa10.37□□□□□ -0.75
COL4A6-202ENST00000372216 CYP26B1Q9NR63 512 aa10.36□□□□□ -0.75
COL4A6-202ENST00000372216 SPDYE5A6NIY4 337 aa10.36□□□□□ -0.75
COL4A6-202ENST00000372216 PEX19P40855 299 aa10.36□□□□□ -0.75
COL4A6-202ENST00000372216 RGS2P41220 211 aa10.36□□□□□ -0.75
COL4A6-202ENST00000372216 RFX5P48382 616 aaPredicted RBP10.36□□□□□ -0.75
COL4A6-202ENST00000372216 SPDYE7PQ495Y7 208 aa10.36□□□□□ -0.75
COL4A6-202ENST00000372216 USP33Q8TEY7 942 aa10.36□□□□□ -0.75
COL4A6-202ENST00000372216 SLC16A3O15427 465 aaKnown RBP10.36□□□□□ -0.75
COL4A6-202ENST00000372216 ACSL3O95573 720 aa10.36□□□□□ -0.75
COL4A6-202ENST00000372216 HSPA4LO95757 839 aa10.36□□□□□ -0.75
COL4A6-202ENST00000372216 TAC1P20366 129 aa10.36□□□□□ -0.75
COL4A6-202ENST00000372216 CSE1LP55060 971 aaKnown RBP10.36□□□□□ -0.75
COL4A6-202ENST00000372216 ARL4CP56559 192 aa10.36□□□□□ -0.75
COL4A6-202ENST00000372216 RBP5P82980 135 aa10.36□□□□□ -0.75
COL4A6-202ENST00000372216 TAF1BQ53T94 588 aaPredicted RBP10.36□□□□□ -0.75
COL4A6-202ENST00000372216 RNF180Q86T96 592 aa10.36□□□□□ -0.75
COL4A6-202ENST00000372216 LRRC71Q8N4P6 559 aa10.36□□□□□ -0.75
COL4A6-202ENST00000372216 DDX50Q9BQ39 737 aaKnown RBP10.36□□□□□ -0.75
COL4A6-202ENST00000372216 Q9H521 79 aa10.36□□□□□ -0.75
COL4A6-202ENST00000372216 DDX56Q9NY93 547 aaKnown RBP10.36□□□□□ -0.75
COL4A6-202ENST00000372216 C17orf102A2RUQ5 167 aa10.36□□□□□ -0.75
COL4A6-202ENST00000372216 MIF4GDA9UHW6 222 aaKnown RBP10.36□□□□□ -0.75
COL4A6-202ENST00000372216 KIAA0391O15091 583 aaKnown RBP10.36□□□□□ -0.75
COL4A6-202ENST00000372216 CA4P22748 312 aa10.36□□□□□ -0.75
COL4A6-202ENST00000372216 RFX3P48380 749 aa10.36□□□□□ -0.75
COL4A6-202ENST00000372216 CDK17Q00537 523 aa10.36□□□□□ -0.75
COL4A6-202ENST00000372216 TRIM72Q6ZMU5 477 aa10.36□□□□□ -0.75
COL4A6-202ENST00000372216 PPP2R3CQ969Q6 453 aa10.36□□□□□ -0.75
COL4A6-202ENST00000372216 PRMT6Q96LA8 375 aaPredicted RBP10.36□□□□□ -0.75
COL4A6-202ENST00000372216 EPAS1Q99814 870 aa10.36□□□□□ -0.75
COL4A6-202ENST00000372216 MAD2L2Q9UI95 211 aa10.36□□□□□ -0.75
COL4A6-202ENST00000372216 TTC7AQ9ULT0 858 aaPredicted RBP10.36□□□□□ -0.75
COL4A6-202ENST00000372216 TBX3O15119 743 aa10.36□□□□□ -0.75
COL4A6-202ENST00000372216 CYP2C9P11712 490 aa10.36□□□□□ -0.75
COL4A6-202ENST00000372216 EPB42P16452 691 aa10.36□□□□□ -0.75
COL4A6-202ENST00000372216 GABPB1Q06547 395 aaPredicted RBP10.36□□□□□ -0.75
COL4A6-202ENST00000372216 HIF1AQ16665 826 aa10.36□□□□□ -0.75
COL4A6-202ENST00000372216 ATG16L1Q676U5 607 aa10.36□□□□□ -0.75
COL4A6-202ENST00000372216 ABTB1Q969K4 478 aaPredicted RBP10.36□□□□□ -0.75
COL4A6-202ENST00000372216 RRAGCQ9HB90 399 aa10.36□□□□□ -0.75
COL4A6-202ENST00000372216 PARVAQ9NVD7 372 aa10.36□□□□□ -0.75
COL4A6-202ENST00000372216 TJP2Q9UDY2 1190 aa10.36□□□□□ -0.75
COL4A6-202ENST00000372216 SNX9Q9Y5X1 595 aa10.36□□□□□ -0.75
COL4A6-202ENST00000372216 PDXKO00764 312 aa10.36□□□□□ -0.75
COL4A6-202ENST00000372216 CYP26A1O43174 497 aa10.36□□□□□ -0.75
COL4A6-202ENST00000372216 SUN1O94901 812 aa10.36□□□□□ -0.75
COL4A6-202ENST00000372216 ROR1Q01973 937 aa10.36□□□□□ -0.75
COL4A6-202ENST00000372216 GNASQ5JWF2 1037 aa10.36□□□□□ -0.75
COL4A6-202ENST00000372216 PRR23CQ6ZRP0 262 aa10.36□□□□□ -0.75
COL4A6-202ENST00000372216 TADA2BQ86TJ2 420 aa10.36□□□□□ -0.75
COL4A6-202ENST00000372216 VPS11Q9H270 941 aa10.36□□□□□ -0.75
COL4A6-202ENST00000372216 ERAP1Q9NZ08 941 aa10.36□□□□□ -0.75
COL4A6-202ENST00000372216 RASGRF2O14827 1237 aa10.35□□□□□ -0.75
COL4A6-202ENST00000372216 WDR72Q3MJ13 1102 aa10.35□□□□□ -0.75
COL4A6-202ENST00000372216 HEATR6Q6AI08 1181 aaKnown RBP10.35□□□□□ -0.75
COL4A6-202ENST00000372216 PHLDB3Q6NSJ2 640 aa10.35□□□□□ -0.75
COL4A6-202ENST00000372216 SRRM1Q8IYB3 904 aaKnown RBP10.35□□□□□ -0.75
COL4A6-202ENST00000372216 ZBTB18Q99592 522 aa10.35□□□□□ -0.75
COL4A6-202ENST00000372216 NCOA3Q9Y6Q9 1424 aa10.35□□□□□ -0.75
COL4A6-202ENST00000372216 CEMIPQ8WUJ3 1361 aa10.35□□□□□ -0.75
COL4A6-202ENST00000372216 CAP2P40123 477 aa10.35□□□□□ -0.75
COL4A6-202ENST00000372216 AARS2Q5JTZ9 985 aaKnown RBP10.35□□□□□ -0.75
COL4A6-202ENST00000372216 DHX40Q8IX18 779 aaKnown RBP10.35□□□□□ -0.75
COL4A6-202ENST00000372216 TTC17Q96AE7 1141 aa10.35□□□□□ -0.75
COL4A6-202ENST00000372216 VPS39Q96JC1 886 aa10.35□□□□□ -0.75
COL4A6-202ENST00000372216 PLEKHA5Q9HAU0 1116 aa10.35□□□□□ -0.75
COL4A6-202ENST00000372216 SENP2Q9HC62 589 aa10.35□□□□□ -0.75
COL4A6-202ENST00000372216 MID2Q9UJV3 735 aa10.35□□□□□ -0.75
COL4A6-202ENST00000372216 KRT7P08729 469 aa10.35□□□□□ -0.75
COL4A6-202ENST00000372216 TCF7P36402 384 aaPredicted RBP10.35□□□□□ -0.75
COL4A6-202ENST00000372216 ZNF211Q13398 564 aaPredicted RBP10.35□□□□□ -0.75
COL4A6-202ENST00000372216 LAMC2Q13753 1193 aa10.35□□□□□ -0.75
COL4A6-202ENST00000372216 COBLL1Q53SF7 1204 aa10.35□□□□□ -0.75
COL4A6-202ENST00000372216 ATF7IP2Q5U623 682 aa10.35□□□□□ -0.75
COL4A6-202ENST00000372216 TTC23LQ6PF05 361 aa10.35□□□□□ -0.75
COL4A6-202ENST00000372216 DDIASQ8IXT1 998 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms