RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 CALCAP01258 141 aa22.35■■□□□ 1.17
CCDC88B-203ENST00000359902 NR1D1P20393 614 aa22.35■■□□□ 1.17
CCDC88B-203ENST00000359902 PTGIRP43119 386 aa22.35■■□□□ 1.17
CCDC88B-203ENST00000359902 CNTN2Q02246 1040 aa22.35■■□□□ 1.17
CCDC88B-203ENST00000359902 DHX9Q08211 1270 aaKnown RBP22.35■■□□□ 1.17
CCDC88B-203ENST00000359902 PSMD6Q15008 389 aa22.35■■□□□ 1.17
CCDC88B-203ENST00000359902 CLEC16AQ2KHT3 1053 aa22.35■■□□□ 1.17
CCDC88B-203ENST00000359902 JAMLQ86YT9 394 aa22.35■■□□□ 1.17
CCDC88B-203ENST00000359902 C18orf8Q96DM3 657 aa22.35■■□□□ 1.17
CCDC88B-203ENST00000359902 ZNF302Q9NR11 478 aa22.35■■□□□ 1.17
CCDC88B-203ENST00000359902 ZDHHC18Q9NUE0 388 aa22.35■■□□□ 1.17
CCDC88B-203ENST00000359902 RRP15Q9Y3B9 282 aaKnown RBP22.35■■□□□ 1.17
CCDC88B-203ENST00000359902 PCDHA3Q9Y5H8 950 aa22.35■■□□□ 1.17
CCDC88B-203ENST00000359902 MYH9P35579 1960 aaKnown RBP22.35■■□□□ 1.17
CCDC88B-203ENST00000359902 ZNFX1Q9P2E3 1918 aaKnown RBP22.34■■□□□ 1.17
CCDC88B-203ENST00000359902 MYZAPP0CAP1 466 aa22.34■■□□□ 1.17
CCDC88B-203ENST00000359902 WNT7BP56706 349 aa22.34■■□□□ 1.17
CCDC88B-203ENST00000359902 PDCLQ13371 301 aa22.34■■□□□ 1.17
CCDC88B-203ENST00000359902 DNERQ8NFT8 737 aa22.34■■□□□ 1.17
CCDC88B-203ENST00000359902 TXLNGYQ9BZA5 131 aa22.34■■□□□ 1.17
CCDC88B-203ENST00000359902 PORCNQ9H237 461 aa22.34■■□□□ 1.17
CCDC88B-203ENST00000359902 GOLGA6L10A6NI86 522 aa22.34■■□□□ 1.17
CCDC88B-203ENST00000359902 SPOPO43791 374 aa22.34■■□□□ 1.17
CCDC88B-203ENST00000359902 GGPS1O95749 300 aa22.34■■□□□ 1.17
CCDC88B-203ENST00000359902 OATP04181 439 aa22.34■■□□□ 1.17
CCDC88B-203ENST00000359902 CHRNA3P32297 505 aa22.34■■□□□ 1.17
CCDC88B-203ENST00000359902 DRG2P55039 364 aaKnown RBP22.34■■□□□ 1.17
CCDC88B-203ENST00000359902 SH3D19Q5HYK7 790 aa22.34■■□□□ 1.17
CCDC88B-203ENST00000359902 SEL1L2Q5TEA6 688 aa22.34■■□□□ 1.17
CCDC88B-203ENST00000359902 LMBRD2Q68DH5 695 aaPredicted RBP22.34■■□□□ 1.17
CCDC88B-203ENST00000359902 ASAP3Q8TDY4 903 aa22.34■■□□□ 1.17
CCDC88B-203ENST00000359902 KCNN1Q92952 543 aa22.34■■□□□ 1.17
CCDC88B-203ENST00000359902 FMO2Q99518 471 aa22.34■■□□□ 1.17
CCDC88B-203ENST00000359902 HAPLN2Q9GZV7 340 aa22.34■■□□□ 1.17
CCDC88B-203ENST00000359902 DHX33Q9H6R0 707 aaKnown RBP22.34■■□□□ 1.17
CCDC88B-203ENST00000359902 C1orf112Q9NSG2 853 aa22.34■■□□□ 1.17
CCDC88B-203ENST00000359902 GLRA2P23416 452 aa22.33■■□□□ 1.17
CCDC88B-203ENST00000359902 HIRAP54198 1017 aaPredicted RBP22.33■■□□□ 1.17
CCDC88B-203ENST00000359902 NLRP11P59045 1033 aaKnown RBP22.33■■□□□ 1.17
CCDC88B-203ENST00000359902 STRN3Q13033 797 aa22.33■■□□□ 1.17
CCDC88B-203ENST00000359902 PRKG1Q13976 671 aa22.33■■□□□ 1.17
CCDC88B-203ENST00000359902 ZACNQ401N2 412 aa22.33■■□□□ 1.17
CCDC88B-203ENST00000359902 CHST13Q8NET6 341 aa22.33■■□□□ 1.17
CCDC88B-203ENST00000359902 MAGOHBQ96A72 148 aaKnown RBP22.33■■□□□ 1.17
CCDC88B-203ENST00000359902 FAM81BQ96LP2 452 aa22.33■■□□□ 1.17
CCDC88B-203ENST00000359902 GPRC5DQ9NZD1 345 aa22.33■■□□□ 1.17
CCDC88B-203ENST00000359902 CNOT8Q9UFF9 292 aaKnown RBP22.33■■□□□ 1.17
CCDC88B-203ENST00000359902 PCYOX1Q9UHG3 505 aa22.33■■□□□ 1.17
CCDC88B-203ENST00000359902 AGO2Q9UKV8 859 aaKnown RBP22.33■■□□□ 1.17
CCDC88B-203ENST00000359902 MYO1FO00160 1098 aa22.32■■□□□ 1.16
CCDC88B-203ENST00000359902 KIAA0391O15091 583 aaKnown RBP22.32■■□□□ 1.16
CCDC88B-203ENST00000359902 PPFIA2O75334 1257 aa22.32■■□□□ 1.16
CCDC88B-203ENST00000359902 C4BPAP04003 597 aaKnown RBP22.32■■□□□ 1.16
CCDC88B-203ENST00000359902 ACOT2P49753 483 aa22.32■■□□□ 1.16
CCDC88B-203ENST00000359902 SKIDA1Q1XH10 827 aa22.32■■□□□ 1.16
CCDC88B-203ENST00000359902 CRELD2Q6UXH1 353 aaPredicted RBP22.32■■□□□ 1.16
CCDC88B-203ENST00000359902 SEPT14Q6ZU15 432 aa22.32■■□□□ 1.16
CCDC88B-203ENST00000359902 DDX55Q8NHQ9 600 aaKnown RBP eCLIP22.32■■□□□ 1.16
CCDC88B-203ENST00000359902 BCAS4Q8TDM0 211 aa22.32■■□□□ 1.16
CCDC88B-203ENST00000359902 PPP2R3BQ9Y5P8 575 aa22.32■■□□□ 1.16
CCDC88B-203ENST00000359902 TCRBV7S2A1N4TA0A589 114 aa22.32■■□□□ 1.16
CCDC88B-203ENST00000359902 UNGP13051 313 aaPredicted RBP22.32■■□□□ 1.16
CCDC88B-203ENST00000359902 TNNI1P19237 187 aa22.32■■□□□ 1.16
CCDC88B-203ENST00000359902 ARL2P36404 184 aa22.32■■□□□ 1.16
CCDC88B-203ENST00000359902 TDRD10Q5VZ19 366 aaKnown RBP22.32■■□□□ 1.16
CCDC88B-203ENST00000359902 TTC27Q6P3X3 843 aa22.32■■□□□ 1.16
CCDC88B-203ENST00000359902 ANKRD35Q8N283 1001 aa22.32■■□□□ 1.16
CCDC88B-203ENST00000359902 FNBP1Q96RU3 617 aa22.32■■□□□ 1.16
CCDC88B-203ENST00000359902 CEP89Q96ST8 783 aa22.32■■□□□ 1.16
CCDC88B-203ENST00000359902 CD2APQ9Y5K6 639 aa22.32■■□□□ 1.16
CCDC88B-203ENST00000359902 PEX10O60683 326 aa22.31■■□□□ 1.16
CCDC88B-203ENST00000359902 HLA-DRAP01903 254 aa22.31■■□□□ 1.16
CCDC88B-203ENST00000359902 NAMPTP43490 491 aa22.31■■□□□ 1.16
CCDC88B-203ENST00000359902 SLC13A5Q86YT5 568 aaPredicted RBP22.31■■□□□ 1.16
CCDC88B-203ENST00000359902 EFCAB13Q8IY85 973 aa22.31■■□□□ 1.16
CCDC88B-203ENST00000359902 ZBTB45Q96K62 511 aaPredicted RBP22.31■■□□□ 1.16
CCDC88B-203ENST00000359902 NIFKQ9BYG3 293 aaKnown RBP22.31■■□□□ 1.16
CCDC88B-203ENST00000359902 CENPHQ9H3R5 247 aa22.31■■□□□ 1.16
CCDC88B-203ENST00000359902 RABEP2Q9H5N1 569 aa22.31■■□□□ 1.16
CCDC88B-203ENST00000359902 RASAL2Q9UJF2 1139 aa22.31■■□□□ 1.16
CCDC88B-203ENST00000359902 SNX24Q9Y343 169 aa22.31■■□□□ 1.16
CCDC88B-203ENST00000359902 PTPRJQ12913 1337 aa22.31■■□□□ 1.16
CCDC88B-203ENST00000359902 IGKV6D-21A0A0A0MT36 114 aa22.31■■□□□ 1.16
CCDC88B-203ENST00000359902 USP2O75604 605 aaPredicted RBP22.31■■□□□ 1.16
CCDC88B-203ENST00000359902 PIGRP01833 764 aa22.31■■□□□ 1.16
CCDC88B-203ENST00000359902 WDR44Q5JSH3 913 aa22.31■■□□□ 1.16
CCDC88B-203ENST00000359902 RUFY4Q6ZNE9 571 aa22.31■■□□□ 1.16
CCDC88B-203ENST00000359902 PCDHB2Q9Y5E7 798 aa22.31■■□□□ 1.16
CCDC88B-203ENST00000359902 LRRIQ4A6NIV6 560 aa22.3■■□□□ 1.16
CCDC88B-203ENST00000359902 K7ERI5 159 aa22.3■■□□□ 1.16
CCDC88B-203ENST00000359902 RWDD2BP57060 319 aa22.3■■□□□ 1.16
CCDC88B-203ENST00000359902 GUCY1A3Q02108 690 aa22.3■■□□□ 1.16
CCDC88B-203ENST00000359902 CYP1B1Q16678 543 aa22.3■■□□□ 1.16
CCDC88B-203ENST00000359902 ZDHHC24Q6UX98 284 aa22.3■■□□□ 1.16
CCDC88B-203ENST00000359902 DEPTORQ8TB45 409 aa22.3■■□□□ 1.16
CCDC88B-203ENST00000359902 ATP8A1Q9Y2Q0 1164 aa22.3■■□□□ 1.16
CCDC88B-203ENST00000359902 LOC285556D6RIA3 1793 aa22.3■■□□□ 1.16
CCDC88B-203ENST00000359902 MYO1CO00159 1063 aa22.3■■□□□ 1.16
CCDC88B-203ENST00000359902 VNN1O95497 513 aa22.3■■□□□ 1.16
CCDC88B-203ENST00000359902 SCP2P22307 547 aa22.3■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms