RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 BBS7Q8IWZ6 715 aa10.74□□□□□ -0.69
CLIP1-202ENST00000358808 DIS3LQ8TF46 1054 aaKnown RBP10.74□□□□□ -0.69
CLIP1-202ENST00000358808 ZNF560Q96MR9 790 aa10.74□□□□□ -0.69
CLIP1-202ENST00000358808 UTP6Q9NYH9 597 aaKnown RBP10.74□□□□□ -0.69
CLIP1-202ENST00000358808 MAN1B1Q9UKM7 699 aa10.74□□□□□ -0.69
CLIP1-202ENST00000358808 PRKAB2O43741 272 aa10.74□□□□□ -0.69
CLIP1-202ENST00000358808 HAUS5O94927 633 aa10.74□□□□□ -0.69
CLIP1-202ENST00000358808 GH2P01242 217 aa10.74□□□□□ -0.69
CLIP1-202ENST00000358808 ABCE1P61221 599 aaKnown RBP10.74□□□□□ -0.69
CLIP1-202ENST00000358808 SNX17Q15036 470 aa10.74□□□□□ -0.69
CLIP1-202ENST00000358808 IL31Q6EBC2 164 aa10.74□□□□□ -0.69
CLIP1-202ENST00000358808 CLEC4GQ6UXB4 293 aa10.74□□□□□ -0.69
CLIP1-202ENST00000358808 GLYCTKQ8IVS8 523 aa10.74□□□□□ -0.69
CLIP1-202ENST00000358808 NDE1Q9NXR1 346 aa10.74□□□□□ -0.69
CLIP1-202ENST00000358808 TLR7Q9NYK1 1049 aaKnown RBP10.74□□□□□ -0.69
CLIP1-202ENST00000358808 FEM1BQ9UK73 627 aa10.74□□□□□ -0.69
CLIP1-202ENST00000358808 DIS3Q9Y2L1 958 aaKnown RBP10.74□□□□□ -0.69
CLIP1-202ENST00000358808 PRR23AA6NEV1 266 aa10.74□□□□□ -0.69
CLIP1-202ENST00000358808 PODXLO00592 558 aa10.74□□□□□ -0.69
CLIP1-202ENST00000358808 ATP1A1P05023 1023 aaKnown RBP10.74□□□□□ -0.69
CLIP1-202ENST00000358808 MZF1P28698 734 aaPredicted RBP10.74□□□□□ -0.69
CLIP1-202ENST00000358808 CUL3Q13618 768 aa10.74□□□□□ -0.69
CLIP1-202ENST00000358808 TMEM179Q6ZVK1 233 aa10.74□□□□□ -0.69
CLIP1-202ENST00000358808 SSH2Q76I76 1423 aa10.74□□□□□ -0.69
CLIP1-202ENST00000358808 ARL8AQ96BM9 186 aa10.74□□□□□ -0.69
CLIP1-202ENST00000358808 SEPT5Q99719 369 aaPredicted RBP10.74□□□□□ -0.69
CLIP1-202ENST00000358808 LATS2Q9NRM7 1088 aa10.74□□□□□ -0.69
CLIP1-202ENST00000358808 NFU1Q9UMS0 254 aa10.74□□□□□ -0.69
CLIP1-202ENST00000358808 MMEP08473 750 aa10.73□□□□□ -0.69
CLIP1-202ENST00000358808 CDC25AP30304 524 aa10.73□□□□□ -0.69
CLIP1-202ENST00000358808 CDK8P49336 464 aa10.73□□□□□ -0.69
CLIP1-202ENST00000358808 HSD17B4P51659 736 aa10.73□□□□□ -0.69
CLIP1-202ENST00000358808 PWP1Q13610 501 aa10.73□□□□□ -0.69
CLIP1-202ENST00000358808 PPP4R3CPQ6ZMV5 832 aa10.73□□□□□ -0.69
CLIP1-202ENST00000358808 INPP5DQ92835 1189 aa10.73□□□□□ -0.69
CLIP1-202ENST00000358808 CENPTQ96BT3 561 aa10.73□□□□□ -0.69
CLIP1-202ENST00000358808 DCTN4Q9UJW0 460 aa10.73□□□□□ -0.69
CLIP1-202ENST00000358808 PCDHA6Q9UN73 950 aa10.73□□□□□ -0.69
CLIP1-202ENST00000358808 PCDHA8Q9Y5H6 950 aa10.73□□□□□ -0.69
CLIP1-202ENST00000358808 NCAPD2Q15021 1401 aa10.73□□□□□ -0.69
CLIP1-202ENST00000358808 CSE1LP55060 971 aaKnown RBP10.73□□□□□ -0.69
CLIP1-202ENST00000358808 TPI1P60174 286 aa10.73□□□□□ -0.69
CLIP1-202ENST00000358808 FAM102AQ5T9C2 384 aaPredicted RBP10.73□□□□□ -0.69
CLIP1-202ENST00000358808 ANO5Q75V66 913 aa10.73□□□□□ -0.69
CLIP1-202ENST00000358808 OR6J1Q8NGC5 347 aa10.73□□□□□ -0.69
CLIP1-202ENST00000358808 FAM162AQ96A26 154 aa10.73□□□□□ -0.69
CLIP1-202ENST00000358808 POLR3FQ9H1D9 316 aaPredicted RBP10.73□□□□□ -0.69
CLIP1-202ENST00000358808 RPAP3Q9H6T3 665 aaPredicted RBP10.73□□□□□ -0.69
CLIP1-202ENST00000358808 SPON1Q9HCB6 807 aa10.73□□□□□ -0.69
CLIP1-202ENST00000358808 ZSWIM6Q9HCJ5 1215 aa10.73□□□□□ -0.69
CLIP1-202ENST00000358808 CARMIL3Q8ND23 1372 aa10.73□□□□□ -0.69
CLIP1-202ENST00000358808 SOWAHDA6NJG2 315 aa10.73□□□□□ -0.69
CLIP1-202ENST00000358808 USP17L5A8MUK1 530 aa10.73□□□□□ -0.69
CLIP1-202ENST00000358808 CHUKO15111 745 aa10.73□□□□□ -0.69
CLIP1-202ENST00000358808 HNRNPCP07910 306 aaKnown RBP eCLIP10.73□□□□□ -0.69
CLIP1-202ENST00000358808 CDH2P19022 906 aaPredicted RBP10.73□□□□□ -0.69
CLIP1-202ENST00000358808 TYK2P29597 1187 aa10.73□□□□□ -0.69
CLIP1-202ENST00000358808 GNA15P30679 374 aa10.73□□□□□ -0.69
CLIP1-202ENST00000358808 S100A5P33763 92 aa10.73□□□□□ -0.69
CLIP1-202ENST00000358808 INPP5AQ14642 412 aa10.73□□□□□ -0.69
CLIP1-202ENST00000358808 SF3B3Q15393 1217 aaKnown RBP10.73□□□□□ -0.69
CLIP1-202ENST00000358808 TRIP4Q15650 581 aaPredicted RBP10.73□□□□□ -0.69
CLIP1-202ENST00000358808 APOA5Q6Q788 366 aa10.73□□□□□ -0.69
CLIP1-202ENST00000358808 PID1Q7Z2X4 250 aa10.73□□□□□ -0.69
CLIP1-202ENST00000358808 DCAF4Q8WV16 495 aa10.73□□□□□ -0.69
CLIP1-202ENST00000358808 MRPL4Q9BYD3 311 aaKnown RBP10.73□□□□□ -0.69
CLIP1-202ENST00000358808 RPRD1BQ9NQG5 326 aaKnown RBP10.73□□□□□ -0.69
CLIP1-202ENST00000358808 LZTS1Q9Y250 596 aa10.73□□□□□ -0.69
CLIP1-202ENST00000358808 PLAAQ9Y263 795 aa10.73□□□□□ -0.69
CLIP1-202ENST00000358808 NBPF26B4DH59 902 aa10.73□□□□□ -0.69
CLIP1-202ENST00000358808 APOL1O14791 398 aa10.73□□□□□ -0.69
CLIP1-202ENST00000358808 GCLMP48507 274 aa10.73□□□□□ -0.69
CLIP1-202ENST00000358808 CACNB3P54284 484 aa10.73□□□□□ -0.69
CLIP1-202ENST00000358808 BCAR1P56945 870 aa10.73□□□□□ -0.69
CLIP1-202ENST00000358808 C6orf10Q5SRN2 563 aa10.73□□□□□ -0.69
CLIP1-202ENST00000358808 NLRP9Q7RTR0 991 aa10.73□□□□□ -0.69
CLIP1-202ENST00000358808 NSUN6Q8TEA1 469 aaKnown RBP10.73□□□□□ -0.69
CLIP1-202ENST00000358808 IP6K2Q9UHH9 426 aa10.73□□□□□ -0.69
CLIP1-202ENST00000358808 PIN4Q9Y237 131 aaKnown RBP10.73□□□□□ -0.69
CLIP1-202ENST00000358808 SNX24Q9Y343 169 aa10.73□□□□□ -0.69
CLIP1-202ENST00000358808 TBXAS1P24557 533 aaPredicted RBP10.73□□□□□ -0.69
CLIP1-202ENST00000358808 PSMC5P62195 406 aa10.73□□□□□ -0.69
CLIP1-202ENST00000358808 CCDC15Q0P6D6 951 aa10.73□□□□□ -0.69
CLIP1-202ENST00000358808 SWSAP1Q6NVH7 229 aa10.73□□□□□ -0.69
CLIP1-202ENST00000358808 HORMAD1Q86X24 394 aa10.73□□□□□ -0.69
CLIP1-202ENST00000358808 NT5DC4Q86YG4 428 aa10.73□□□□□ -0.69
CLIP1-202ENST00000358808 AGBL1Q96MI9 1066 aa10.73□□□□□ -0.69
CLIP1-202ENST00000358808 DEPDC7Q96QD5 511 aa10.73□□□□□ -0.69
CLIP1-202ENST00000358808 MRPS26Q9BYN8 205 aaKnown RBP10.73□□□□□ -0.69
CLIP1-202ENST00000358808 CD274Q9NZQ7 290 aa10.73□□□□□ -0.69
CLIP1-202ENST00000358808 SLC30A1Q9Y6M5 507 aa10.73□□□□□ -0.69
CLIP1-202ENST00000358808 BCORL1Q5H9F3 1711 aa10.72□□□□□ -0.69
CLIP1-202ENST00000358808 MAP3K13O43283 966 aa10.72□□□□□ -0.69
CLIP1-202ENST00000358808 BRAFP15056 766 aa10.72□□□□□ -0.69
CLIP1-202ENST00000358808 SSTR3P32745 418 aaPredicted RBP10.72□□□□□ -0.69
CLIP1-202ENST00000358808 ALDH6A1Q02252 535 aaKnown RBP10.72□□□□□ -0.69
CLIP1-202ENST00000358808 ARHGAP15Q53QZ3 475 aa10.72□□□□□ -0.69
CLIP1-202ENST00000358808 PADI6Q6TGC4 694 aa10.72□□□□□ -0.69
CLIP1-202ENST00000358808 ELMO2Q96JJ3 720 aa10.72□□□□□ -0.69
CLIP1-202ENST00000358808 NARFQ9UHQ1 456 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms