RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 PSMD5Q16401 504 aa12.45□□□□□ -0.42
RTN3-204ENST00000354497 PABPC1LQ4VXU2 614 aaKnown RBP12.45□□□□□ -0.42
RTN3-204ENST00000354497 RNF20Q5VTR2 975 aa12.45□□□□□ -0.42
RTN3-204ENST00000354497 IL31Q6EBC2 164 aa12.45□□□□□ -0.42
RTN3-204ENST00000354497 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.45□□□□□ -0.42
RTN3-204ENST00000354497 PRR23CQ6ZRP0 262 aa12.45□□□□□ -0.42
RTN3-204ENST00000354497 NPAS3Q8IXF0 933 aa12.45□□□□□ -0.42
RTN3-204ENST00000354497 TBCKQ8TEA7 893 aa12.45□□□□□ -0.42
RTN3-204ENST00000354497 NXF3Q9H4D5 531 aaKnown RBP12.45□□□□□ -0.42
RTN3-204ENST00000354497 SEMA4GQ9NTN9 838 aa12.45□□□□□ -0.42
RTN3-204ENST00000354497 VPS54Q9P1Q0 977 aa12.45□□□□□ -0.42
RTN3-204ENST00000354497 PARP2Q9UGN5 583 aa12.45□□□□□ -0.42
RTN3-204ENST00000354497 GIT1Q9Y2X7 761 aa12.45□□□□□ -0.42
RTN3-204ENST00000354497 MRPS23Q9Y3D9 190 aaKnown RBP12.45□□□□□ -0.42
RTN3-204ENST00000354497 CCDC196A0A1B0GTZ2 297 aa12.44□□□□□ -0.42
RTN3-204ENST00000354497 INO80B-WBP1J3KQ70 363 aa12.44□□□□□ -0.42
RTN3-204ENST00000354497 GDF9O60383 454 aa12.44□□□□□ -0.42
RTN3-204ENST00000354497 NPTXRO95502 500 aa12.44□□□□□ -0.42
RTN3-204ENST00000354497 RETP07949 1114 aa12.44□□□□□ -0.42
RTN3-204ENST00000354497 USP11P51784 963 aa12.44□□□□□ -0.42
RTN3-204ENST00000354497 NLRP5P59047 1200 aa12.44□□□□□ -0.42
RTN3-204ENST00000354497 GRM2Q14416 872 aa12.44□□□□□ -0.42
RTN3-204ENST00000354497 EMC2Q15006 297 aa12.44□□□□□ -0.42
RTN3-204ENST00000354497 FAM171A1Q5VUB5 890 aa12.44□□□□□ -0.42
RTN3-204ENST00000354497 DHX32Q7L7V1 743 aaKnown RBP12.44□□□□□ -0.42
RTN3-204ENST00000354497 CELF5Q8N6W0 485 aaKnown RBP12.44□□□□□ -0.42
RTN3-204ENST00000354497 TCP11Q8WWU5 503 aa12.44□□□□□ -0.42
RTN3-204ENST00000354497 CLSTN3Q9BQT9 956 aa12.44□□□□□ -0.42
RTN3-204ENST00000354497 ESYT1Q9BSJ8 1104 aa12.44□□□□□ -0.42
RTN3-204ENST00000354497 TTPALQ9BTX7 342 aa12.44□□□□□ -0.42
RTN3-204ENST00000354497 PLA2G2FQ9BZM2 168 aa12.44□□□□□ -0.42
RTN3-204ENST00000354497 CSRNP2Q9H175 543 aa12.44□□□□□ -0.42
RTN3-204ENST00000354497 WDR81Q562E7 1941 aa12.43□□□□□ -0.42
RTN3-204ENST00000354497 SPTBN2O15020 2390 aa12.43□□□□□ -0.42
RTN3-204ENST00000354497 CASTOR2A6NHX0 329 aa12.43□□□□□ -0.42
RTN3-204ENST00000354497 PRPF3O43395 683 aaKnown RBP12.43□□□□□ -0.42
RTN3-204ENST00000354497 EDIL3O43854 480 aa12.43□□□□□ -0.42
RTN3-204ENST00000354497 ECI2O75521 394 aa12.43□□□□□ -0.42
RTN3-204ENST00000354497 XRCC6P12956 609 aaKnown RBP eCLIP12.43□□□□□ -0.42
RTN3-204ENST00000354497 AXLP30530 894 aa12.43□□□□□ -0.42
RTN3-204ENST00000354497 RFC5P40937 340 aa12.43□□□□□ -0.42
RTN3-204ENST00000354497 QARSP47897 775 aaKnown RBP12.43□□□□□ -0.42
RTN3-204ENST00000354497 EXOSC10Q01780 885 aaKnown RBP12.43□□□□□ -0.42
RTN3-204ENST00000354497 GRIK3Q13003 919 aa12.43□□□□□ -0.42
RTN3-204ENST00000354497 Q4G0T1 1027 aa12.43□□□□□ -0.42
RTN3-204ENST00000354497 AXDND1Q5T1B0 1012 aaPredicted RBP12.43□□□□□ -0.42
RTN3-204ENST00000354497 CDR2LQ86X02 465 aaPredicted RBP12.43□□□□□ -0.42
RTN3-204ENST00000354497 EXOC8Q8IYI6 725 aa12.43□□□□□ -0.42
RTN3-204ENST00000354497 CCDC51Q96ER9 411 aa12.43□□□□□ -0.42
RTN3-204ENST00000354497 PAAF1Q9BRP4 392 aa12.43□□□□□ -0.42
RTN3-204ENST00000354497 SLC26A6Q9BXS9 759 aa12.43□□□□□ -0.42
RTN3-204ENST00000354497 BRD9Q9H8M2 597 aa12.43□□□□□ -0.42
RTN3-204ENST00000354497 DNMT3BQ9UBC3 853 aaKnown RBP12.43□□□□□ -0.42
RTN3-204ENST00000354497 MAP1BP46821 2468 aaKnown RBP12.42□□□□□ -0.42
RTN3-204ENST00000354497 MAN2B1O00754 1011 aa12.42□□□□□ -0.42
RTN3-204ENST00000354497 DYNC1I1O14576 645 aa12.42□□□□□ -0.42
RTN3-204ENST00000354497 ASAP2O43150 1006 aa12.42□□□□□ -0.42
RTN3-204ENST00000354497 ADAM12O43184 909 aa12.42□□□□□ -0.42
RTN3-204ENST00000354497 DKC1O60832 514 aaKnown RBP eCLIP12.42□□□□□ -0.42
RTN3-204ENST00000354497 CCR3P51677 355 aa12.42□□□□□ -0.42
RTN3-204ENST00000354497 SRSF5Q13243 272 aaKnown RBP12.42□□□□□ -0.42
RTN3-204ENST00000354497 CSRP2Q16527 193 aa12.42□□□□□ -0.42
RTN3-204ENST00000354497 AASDHQ4L235 1098 aaPredicted RBP12.42□□□□□ -0.42
RTN3-204ENST00000354497 XKR9Q5GH70 373 aa12.42□□□□□ -0.42
RTN3-204ENST00000354497 FERMT3Q86UX7 667 aa12.42□□□□□ -0.42
RTN3-204ENST00000354497 GPR65Q8IYL9 337 aa12.42□□□□□ -0.42
RTN3-204ENST00000354497 LNX1Q8TBB1 728 aaPredicted RBP12.42□□□□□ -0.42
RTN3-204ENST00000354497 CHRDQ9H2X0 955 aa12.42□□□□□ -0.42
RTN3-204ENST00000354497 DHX33Q9H6R0 707 aaKnown RBP12.42□□□□□ -0.42
RTN3-204ENST00000354497 LMAN1LQ9HAT1 526 aa12.42□□□□□ -0.42
RTN3-204ENST00000354497 CHURC1-FNTBB4DL54 471 aa12.41□□□□□ -0.42
RTN3-204ENST00000354497 EML1O00423 815 aa12.41□□□□□ -0.42
RTN3-204ENST00000354497 CLGNO14967 610 aa12.41□□□□□ -0.42
RTN3-204ENST00000354497 LRP3O75074 770 aa12.41□□□□□ -0.42
RTN3-204ENST00000354497 KIF4AO95239 1232 aa12.41□□□□□ -0.42
RTN3-204ENST00000354497 TDGF1P13385 188 aa12.41□□□□□ -0.42
RTN3-204ENST00000354497 HOXA9P31269 272 aa12.41□□□□□ -0.42
RTN3-204ENST00000354497 FNTBP49356 437 aa12.41□□□□□ -0.42
RTN3-204ENST00000354497 SATB1Q01826 763 aa12.41□□□□□ -0.42
RTN3-204ENST00000354497 FZD5Q13467 585 aa12.41□□□□□ -0.42
RTN3-204ENST00000354497 TFDP1Q14186 410 aa12.41□□□□□ -0.42
RTN3-204ENST00000354497 ADCK5Q3MIX3 580 aa12.41□□□□□ -0.42
RTN3-204ENST00000354497 N4BP2L1Q5TBK1 243 aaPredicted RBP12.41□□□□□ -0.42
RTN3-204ENST00000354497 HEATR6Q6AI08 1181 aaKnown RBP12.41□□□□□ -0.42
RTN3-204ENST00000354497 TANGO2Q6ICL3 276 aa12.41□□□□□ -0.42
RTN3-204ENST00000354497 B3GNT9Q6UX72 402 aa12.41□□□□□ -0.42
RTN3-204ENST00000354497 CEP68Q76N32 757 aa12.41□□□□□ -0.42
RTN3-204ENST00000354497 PIK3R5Q8WYR1 880 aa12.41□□□□□ -0.42
RTN3-204ENST00000354497 DDX1Q92499 740 aaKnown RBP12.41□□□□□ -0.42
RTN3-204ENST00000354497 FAM3CQ92520 227 aa12.41□□□□□ -0.42
RTN3-204ENST00000354497 DNASE1L2Q92874 299 aa12.41□□□□□ -0.42
RTN3-204ENST00000354497 MTRQ99707 1265 aa12.41□□□□□ -0.42
RTN3-204ENST00000354497 SH2B1Q9NRF2 756 aaPredicted RBP12.41□□□□□ -0.42
RTN3-204ENST00000354497 DDX25Q9UHL0 483 aaKnown RBP12.41□□□□□ -0.42
RTN3-204ENST00000354497 KCNH3Q9ULD8 1083 aa12.41□□□□□ -0.42
RTN3-204ENST00000354497 MTCL1Q9Y4B5 1905 aaKnown RBP12.41□□□□□ -0.42
RTN3-204ENST00000354497 TDRD15B5MCY1 1934 aaKnown RBP12.4□□□□□ -0.42
RTN3-204ENST00000354497 B4GALT5O43286 388 aa12.4□□□□□ -0.42
RTN3-204ENST00000354497 MARCH6O60337 910 aa12.4□□□□□ -0.42
RTN3-204ENST00000354497 CPA1P15085 419 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms