RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 CLEC16AQ2KHT3 1053 aa23.74■■□□□ 1.39
UPF3A-201ENST00000351487 ABHD15Q6UXT9 468 aa23.74■■□□□ 1.39
UPF3A-201ENST00000351487 SPATS2Q86XZ4 545 aaKnown RBP23.74■■□□□ 1.39
UPF3A-201ENST00000351487 C12orf50Q8NA57 414 aaPredicted RBP23.74■■□□□ 1.39
UPF3A-201ENST00000351487 IFT74Q96LB3 600 aa23.74■■□□□ 1.39
UPF3A-201ENST00000351487 MAF1Q9H063 256 aa23.74■■□□□ 1.39
UPF3A-201ENST00000351487 CYP39A1Q9NYL5 469 aa23.74■■□□□ 1.39
UPF3A-201ENST00000351487 MTUS1Q9ULD2 1270 aa23.74■■□□□ 1.39
UPF3A-201ENST00000351487 ACTR2P61160 394 aa23.73■■□□□ 1.39
UPF3A-201ENST00000351487 SIX1Q15475 284 aaPredicted RBP23.73■■□□□ 1.39
UPF3A-201ENST00000351487 CCDC137Q6PK04 289 aaKnown RBP23.73■■□□□ 1.39
UPF3A-201ENST00000351487 FBXO25Q8TCJ0 367 aa23.73■■□□□ 1.39
UPF3A-201ENST00000351487 BTBD6Q96KE9 485 aa23.73■■□□□ 1.39
UPF3A-201ENST00000351487 PABPC3Q9H361 631 aaKnown RBP23.73■■□□□ 1.39
UPF3A-201ENST00000351487 KIAA1586Q9HCI6 787 aa23.73■■□□□ 1.39
UPF3A-201ENST00000351487 PARP2Q9UGN5 583 aa23.73■■□□□ 1.39
UPF3A-201ENST00000351487 SNX24Q9Y343 169 aa23.73■■□□□ 1.39
UPF3A-201ENST00000351487 GMPSP49915 693 aaPredicted RBP23.72■■□□□ 1.39
UPF3A-201ENST00000351487 RWDD2BP57060 319 aa23.72■■□□□ 1.39
UPF3A-201ENST00000351487 TMEM132BQ14DG7 1078 aa23.72■■□□□ 1.39
UPF3A-201ENST00000351487 KRT71Q3SY84 523 aa23.72■■□□□ 1.39
UPF3A-201ENST00000351487 FAM213AQ9BRX8 229 aa23.72■■□□□ 1.39
UPF3A-201ENST00000351487 POLR3FQ9H1D9 316 aaPredicted RBP23.72■■□□□ 1.39
UPF3A-201ENST00000351487 PICK1Q9NRD5 415 aa23.72■■□□□ 1.39
UPF3A-201ENST00000351487 C1orf112Q9NSG2 853 aa23.72■■□□□ 1.39
UPF3A-201ENST00000351487 KCNG1Q9UIX4 513 aa23.72■■□□□ 1.39
UPF3A-201ENST00000351487 TELO2Q9Y4R8 837 aa23.72■■□□□ 1.39
UPF3A-201ENST00000351487 EXTL3O43909 919 aa23.72■■□□□ 1.39
UPF3A-201ENST00000351487 FNTAP49354 379 aa23.72■■□□□ 1.39
UPF3A-201ENST00000351487 PLTPP55058 493 aa23.72■■□□□ 1.39
UPF3A-201ENST00000351487 PPP2R2AP63151 447 aa23.72■■□□□ 1.39
UPF3A-201ENST00000351487 CPNE8Q86YQ8 564 aa23.72■■□□□ 1.39
UPF3A-201ENST00000351487 MYCBPAPQ8TBZ2 947 aa23.72■■□□□ 1.39
UPF3A-201ENST00000351487 PSPC1Q8WXF1 523 aaKnown RBP23.72■■□□□ 1.39
UPF3A-201ENST00000351487 BICD1Q96G01 975 aa23.72■■□□□ 1.39
UPF3A-201ENST00000351487 TEX13BQ9BXU2 312 aa23.72■■□□□ 1.39
UPF3A-201ENST00000351487 A1CFQ9NQ94 594 aaKnown RBP23.72■■□□□ 1.39
UPF3A-201ENST00000351487 CNOT8Q9UFF9 292 aaKnown RBP23.72■■□□□ 1.39
UPF3A-201ENST00000351487 SPATA31C2B4DYI2 1134 aa23.71■■□□□ 1.39
UPF3A-201ENST00000351487 C19orf81C9J6K1 198 aa23.71■■□□□ 1.39
UPF3A-201ENST00000351487 ANKRD65E5RJM6 399 aa23.71■■□□□ 1.39
UPF3A-201ENST00000351487 UNGP13051 313 aaPredicted RBP23.71■■□□□ 1.39
UPF3A-201ENST00000351487 RPL21P46778 160 aaKnown RBP23.71■■□□□ 1.39
UPF3A-201ENST00000351487 PMS2P54278 862 aa23.71■■□□□ 1.39
UPF3A-201ENST00000351487 HMGCS2P54868 508 aa23.71■■□□□ 1.39
UPF3A-201ENST00000351487 XKR3Q5GH77 459 aa23.71■■□□□ 1.39
UPF3A-201ENST00000351487 HOOK3Q86VS8 718 aa23.71■■□□□ 1.39
UPF3A-201ENST00000351487 ZKSCAN4Q969J2 545 aaPredicted RBP23.71■■□□□ 1.39
UPF3A-201ENST00000351487 TLCD1Q96CP7 247 aa23.71■■□□□ 1.39
UPF3A-201ENST00000351487 WRNIP1Q96S55 665 aa23.71■■□□□ 1.39
UPF3A-201ENST00000351487 ACAD9Q9H845 621 aa23.71■■□□□ 1.39
UPF3A-201ENST00000351487 AVENQ9NQS1 362 aaPredicted RBP23.71■■□□□ 1.39
UPF3A-201ENST00000351487 STYXL1Q9Y6J8 313 aa23.71■■□□□ 1.39
UPF3A-201ENST00000351487 FAM107AO95990 144 aa23.71■■□□□ 1.39
UPF3A-201ENST00000351487 PAEPP09466 180 aa23.71■■□□□ 1.39
UPF3A-201ENST00000351487 COILP38432 576 aaPredicted RBP23.71■■□□□ 1.39
UPF3A-201ENST00000351487 PSMD6Q15008 389 aa23.71■■□□□ 1.39
UPF3A-201ENST00000351487 GNPTABQ3T906 1256 aa23.71■■□□□ 1.39
UPF3A-201ENST00000351487 MIS18BP1Q6P0N0 1132 aa23.71■■□□□ 1.39
UPF3A-201ENST00000351487 NLRP14Q86W24 1093 aa23.71■■□□□ 1.39
UPF3A-201ENST00000351487 ZNF677Q86XU0 584 aa23.71■■□□□ 1.39
UPF3A-201ENST00000351487 ZNF473Q8WTR7 871 aaKnown RBP23.71■■□□□ 1.39
UPF3A-201ENST00000351487 PPM1EQ8WY54 764 aa23.71■■□□□ 1.39
UPF3A-201ENST00000351487 FAM129AQ9BZQ8 928 aa23.71■■□□□ 1.39
UPF3A-201ENST00000351487 NOVA2Q9UNW9 492 aaKnown RBP23.71■■□□□ 1.39
UPF3A-201ENST00000351487 A0A087WUV0 522 aaPredicted RBP23.7■■□□□ 1.38
UPF3A-201ENST00000351487 TCRBV7S2A1N4TA0A589 114 aa23.7■■□□□ 1.38
UPF3A-201ENST00000351487 KRT5P13647 590 aa23.7■■□□□ 1.38
UPF3A-201ENST00000351487 SCP2P22307 547 aa23.7■■□□□ 1.38
UPF3A-201ENST00000351487 IFFO1Q0D2I5 559 aa23.7■■□□□ 1.38
UPF3A-201ENST00000351487 ZNF516Q92618 1163 aa23.7■■□□□ 1.38
UPF3A-201ENST00000351487 PI4K2AQ9BTU6 479 aa23.7■■□□□ 1.38
UPF3A-201ENST00000351487 CNOT7Q9UIV1 285 aaKnown RBP23.7■■□□□ 1.38
UPF3A-201ENST00000351487 SUPT20HL2P0C7V6 817 aa23.69■■□□□ 1.38
UPF3A-201ENST00000351487 RARAP10276 462 aa23.69■■□□□ 1.38
UPF3A-201ENST00000351487 SUPT20HL1Q3ZLR7 823 aa23.69■■□□□ 1.38
UPF3A-201ENST00000351487 ZACNQ401N2 412 aa23.69■■□□□ 1.38
UPF3A-201ENST00000351487 C3orf20Q8ND61 904 aa23.69■■□□□ 1.38
UPF3A-201ENST00000351487 CCT8L2Q96SF2 557 aa23.69■■□□□ 1.38
UPF3A-201ENST00000351487 PLVAPQ9BX97 442 aa23.69■■□□□ 1.38
UPF3A-201ENST00000351487 BCCIPQ9P287 314 aaKnown RBP eCLIP23.69■■□□□ 1.38
UPF3A-201ENST00000351487 MTRF1LQ9UGC7 380 aaKnown RBP23.69■■□□□ 1.38
UPF3A-201ENST00000351487 LIG4P49917 911 aa23.69■■□□□ 1.38
UPF3A-201ENST00000351487 EMC2Q15006 297 aa23.69■■□□□ 1.38
UPF3A-201ENST00000351487 TADA2BQ86TJ2 420 aa23.69■■□□□ 1.38
UPF3A-201ENST00000351487 SLCO2A1Q92959 643 aa23.69■■□□□ 1.38
UPF3A-201ENST00000351487 LRRC19Q9H756 370 aa23.69■■□□□ 1.38
UPF3A-201ENST00000351487 PCDHB2Q9Y5E7 798 aa23.69■■□□□ 1.38
UPF3A-201ENST00000351487 TULP1O00294 542 aaPredicted RBP23.68■■□□□ 1.38
UPF3A-201ENST00000351487 CPP00450 1065 aa23.68■■□□□ 1.38
UPF3A-201ENST00000351487 MYBL1P10243 752 aa23.68■■□□□ 1.38
UPF3A-201ENST00000351487 SEC24CP53992 1094 aa23.68■■□□□ 1.38
UPF3A-201ENST00000351487 MAGOHP61326 146 aaKnown RBP23.68■■□□□ 1.38
UPF3A-201ENST00000351487 SP4Q02446 784 aa23.68■■□□□ 1.38
UPF3A-201ENST00000351487 CATSPERGQ6ZRH7 1159 aa23.68■■□□□ 1.38
UPF3A-201ENST00000351487 CYFIP1Q7L576 1253 aa23.68■■□□□ 1.38
UPF3A-201ENST00000351487 ELMO3Q96BJ8 720 aa23.68■■□□□ 1.38
UPF3A-201ENST00000351487 TRIM11Q96F44 468 aa23.68■■□□□ 1.38
UPF3A-201ENST00000351487 LRRC4CQ9HCJ2 640 aa23.68■■□□□ 1.38
UPF3A-201ENST00000351487 MYPNQ86TC9 1320 aa23.68■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms