RNA–Protein interactions for RNA: ENST00000343060.4

HOXA1-201, Transcript of homeobox A1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXA1, Length 2,517 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1-201ENST00000343060 TRABD2AQ86V40 505 aa10.31□□□□□ -0.76
HOXA1-201ENST00000343060 RPUSD2Q8IZ73 545 aaKnown RBP10.31□□□□□ -0.76
HOXA1-201ENST00000343060 LARGE2Q8N3Y3 721 aa10.31□□□□□ -0.76
HOXA1-201ENST00000343060 ZNF564Q8TBZ8 553 aaPredicted RBP10.31□□□□□ -0.76
HOXA1-201ENST00000343060 GRK7Q8WTQ7 553 aa10.31□□□□□ -0.76
HOXA1-201ENST00000343060 KIFAP3Q92845 792 aa10.31□□□□□ -0.76
HOXA1-201ENST00000343060 BICD1Q96G01 975 aa10.31□□□□□ -0.76
HOXA1-201ENST00000343060 FAM163AQ96GL9 167 aaPredicted RBP10.31□□□□□ -0.76
HOXA1-201ENST00000343060 FAM20AQ96MK3 541 aa10.31□□□□□ -0.76
HOXA1-201ENST00000343060 PCDHB18PQ96TA0 734 aa10.31□□□□□ -0.76
HOXA1-201ENST00000343060 PIDD1Q9HB75 910 aa10.31□□□□□ -0.76
HOXA1-201ENST00000343060 AGPAT3Q9NRZ7 376 aa10.31□□□□□ -0.76
HOXA1-201ENST00000343060 SEL1LQ9UBV2 794 aa10.31□□□□□ -0.76
HOXA1-201ENST00000343060 NOCTQ9UK39 431 aaKnown RBP10.31□□□□□ -0.76
HOXA1-201ENST00000343060 GTF3C4Q9UKN8 822 aa10.31□□□□□ -0.76
HOXA1-201ENST00000343060 VAV3Q9UKW4 847 aa10.31□□□□□ -0.76
HOXA1-201ENST00000343060 GAKO14976 1311 aa10.31□□□□□ -0.76
HOXA1-201ENST00000343060 ZNF536O15090 1300 aa10.31□□□□□ -0.76
HOXA1-201ENST00000343060 EIF4E1BA6NMX2 242 aaKnown RBP10.31□□□□□ -0.76
HOXA1-201ENST00000343060 LRRN2O75325 713 aa10.31□□□□□ -0.76
HOXA1-201ENST00000343060 TRIM49P0CI25 452 aa10.31□□□□□ -0.76
HOXA1-201ENST00000343060 TRIM49CP0CI26 452 aa10.31□□□□□ -0.76
HOXA1-201ENST00000343060 DLATP10515 647 aaKnown RBP10.31□□□□□ -0.76
HOXA1-201ENST00000343060 MARK3P27448 753 aa10.31□□□□□ -0.76
HOXA1-201ENST00000343060 POLD1P28340 1107 aa10.31□□□□□ -0.76
HOXA1-201ENST00000343060 ARHGAP4P98171 946 aa10.31□□□□□ -0.76
HOXA1-201ENST00000343060 BFSP1Q12934 665 aa10.31□□□□□ -0.76
HOXA1-201ENST00000343060 MYBPC2Q14324 1141 aa10.31□□□□□ -0.76
HOXA1-201ENST00000343060 TNIP1Q15025 636 aa10.31□□□□□ -0.76
HOXA1-201ENST00000343060 ARHGAP44Q17R89 818 aa10.31□□□□□ -0.76
HOXA1-201ENST00000343060 CTC1Q2NKJ3 1217 aa10.31□□□□□ -0.76
HOXA1-201ENST00000343060 PPP1R15BQ5SWA1 713 aa10.31□□□□□ -0.76
HOXA1-201ENST00000343060 TTBK2Q6IQ55 1244 aa10.31□□□□□ -0.76
HOXA1-201ENST00000343060 RINT1Q6NUQ1 792 aa10.31□□□□□ -0.76
HOXA1-201ENST00000343060 C4orf50Q6ZRC1 276 aa10.31□□□□□ -0.76
HOXA1-201ENST00000343060 SEPT14Q6ZU15 432 aa10.31□□□□□ -0.76
HOXA1-201ENST00000343060 CPNE8Q86YQ8 564 aa10.31□□□□□ -0.76
HOXA1-201ENST00000343060 DRAXINQ8NBI3 349 aaPredicted RBP10.31□□□□□ -0.76
HOXA1-201ENST00000343060 MAIP1Q8WWC4 291 aa10.31□□□□□ -0.76
HOXA1-201ENST00000343060 TIPINQ9BVW5 301 aa10.31□□□□□ -0.76
HOXA1-201ENST00000343060 FOXP3Q9BZS1 431 aa10.31□□□□□ -0.76
HOXA1-201ENST00000343060 BHMT2Q9H2M3 363 aa10.31□□□□□ -0.76
HOXA1-201ENST00000343060 BTG4Q9NY30 223 aa10.31□□□□□ -0.76
HOXA1-201ENST00000343060 UVRAGQ9P2Y5 699 aa10.31□□□□□ -0.76
HOXA1-201ENST00000343060 RBBP6Q7Z6E9 1792 aaKnown RBP10.3□□□□□ -0.76
HOXA1-201ENST00000343060 USP17L15C9J2P7 530 aa10.3□□□□□ -0.76
HOXA1-201ENST00000343060 RASA4BC9J798 803 aa10.3□□□□□ -0.76
HOXA1-201ENST00000343060 USP17L10C9JJH3 530 aa10.3□□□□□ -0.76
HOXA1-201ENST00000343060 USP17L13C9JLJ4 530 aa10.3□□□□□ -0.76
HOXA1-201ENST00000343060 USP17L11C9JVI0 530 aa10.3□□□□□ -0.76
HOXA1-201ENST00000343060 USP17L18D6R9N7 530 aa10.3□□□□□ -0.76
HOXA1-201ENST00000343060 USP17L22D6RA61 530 aa10.3□□□□□ -0.76
HOXA1-201ENST00000343060 USP17L17D6RBQ6 530 aa10.3□□□□□ -0.76
HOXA1-201ENST00000343060 USP17L19D6RCP7 530 aa10.3□□□□□ -0.76
HOXA1-201ENST00000343060 USP17L20D6RJB6 530 aa10.3□□□□□ -0.76
HOXA1-201ENST00000343060 C2CD2LO14523 706 aa10.3□□□□□ -0.76
HOXA1-201ENST00000343060 HGSO14964 777 aaPredicted RBP10.3□□□□□ -0.76
HOXA1-201ENST00000343060 P4HA2O15460 535 aa10.3□□□□□ -0.76
HOXA1-201ENST00000343060 CLDN3O15551 220 aa10.3□□□□□ -0.76
HOXA1-201ENST00000343060 RASA4O43374 803 aa10.3□□□□□ -0.76
HOXA1-201ENST00000343060 SPOPO43791 374 aa10.3□□□□□ -0.76
HOXA1-201ENST00000343060 AKR1B1P15121 316 aa10.3□□□□□ -0.76
HOXA1-201ENST00000343060 ATF2P15336 505 aa10.3□□□□□ -0.76
HOXA1-201ENST00000343060 TM4SF1P30408 202 aa10.3□□□□□ -0.76
HOXA1-201ENST00000343060 USP17L24Q0WX57 530 aa10.3□□□□□ -0.76
HOXA1-201ENST00000343060 DNAJC3Q13217 504 aa10.3□□□□□ -0.76
HOXA1-201ENST00000343060 SPARCL1Q14515 664 aa10.3□□□□□ -0.76
HOXA1-201ENST00000343060 TBC1D9BQ66K14 1250 aa10.3□□□□□ -0.76
HOXA1-201ENST00000343060 USP17L6PQ6QN14 398 aa10.3□□□□□ -0.76
HOXA1-201ENST00000343060 SESTD1Q86VW0 696 aa10.3□□□□□ -0.76
HOXA1-201ENST00000343060 EPS8L1Q8TE68 723 aa10.3□□□□□ -0.76
HOXA1-201ENST00000343060 MIPEPQ99797 713 aa10.3□□□□□ -0.76
HOXA1-201ENST00000343060 CCDC77Q9BR77 488 aa10.3□□□□□ -0.76
HOXA1-201ENST00000343060 PLVAPQ9BX97 442 aa10.3□□□□□ -0.76
HOXA1-201ENST00000343060 DCLK3Q9C098 648 aa10.3□□□□□ -0.76
HOXA1-201ENST00000343060 NYXQ9GZU5 481 aa10.3□□□□□ -0.76
HOXA1-201ENST00000343060 IKZF4Q9H2S9 585 aa10.3□□□□□ -0.76
HOXA1-201ENST00000343060 DLGAP2Q9P1A6 1054 aa10.3□□□□□ -0.76
HOXA1-201ENST00000343060 SMG5Q9UPR3 1016 aaKnown RBP10.3□□□□□ -0.76
HOXA1-201ENST00000343060 FRMD4BQ9Y2L6 1034 aa10.3□□□□□ -0.76
HOXA1-201ENST00000343060 RABGAP1Q9Y3P9 1069 aa10.3□□□□□ -0.76
HOXA1-201ENST00000343060 ZNFX1Q9P2E3 1918 aaKnown RBP10.3□□□□□ -0.76
HOXA1-201ENST00000343060 ATRNL1Q5VV63 1379 aa10.3□□□□□ -0.76
HOXA1-201ENST00000343060 ENTPD5O75356 428 aa10.3□□□□□ -0.76
HOXA1-201ENST00000343060 GAS8O95995 478 aa10.3□□□□□ -0.76
HOXA1-201ENST00000343060 GCAP28676 217 aa10.3□□□□□ -0.76
HOXA1-201ENST00000343060 NMT1P30419 496 aaKnown RBP10.3□□□□□ -0.76
HOXA1-201ENST00000343060 CIITAP33076 1130 aa10.3□□□□□ -0.76
HOXA1-201ENST00000343060 RFC5P40937 340 aa10.3□□□□□ -0.76
HOXA1-201ENST00000343060 SNX1Q13596 522 aa10.3□□□□□ -0.76
HOXA1-201ENST00000343060 COG2Q14746 738 aa10.3□□□□□ -0.76
HOXA1-201ENST00000343060 RASA2Q15283 850 aa10.3□□□□□ -0.76
HOXA1-201ENST00000343060 MUM1Q2TAK8 710 aa10.3□□□□□ -0.76
HOXA1-201ENST00000343060 EPC2Q52LR7 807 aa10.3□□□□□ -0.76
HOXA1-201ENST00000343060 FOXB2Q5VYV0 432 aa10.3□□□□□ -0.76
HOXA1-201ENST00000343060 CEP128Q6ZU80 1094 aa10.3□□□□□ -0.76
HOXA1-201ENST00000343060 C1orf186Q6ZWK4 172 aa10.3□□□□□ -0.76
HOXA1-201ENST00000343060 HS2ST1Q7LGA3 356 aa10.3□□□□□ -0.76
HOXA1-201ENST00000343060 BBOF1Q8ND07 529 aa10.3□□□□□ -0.76
HOXA1-201ENST00000343060 LRRC8CQ8TDW0 803 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms