RNA–Protein interactions for RNA: ENST00000341307.6

RTN3-203, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,524 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-203ENST00000341307 TXLNGQ9NUQ3 528 aa12.65□□□□□ -0.38
RTN3-203ENST00000341307 CROTQ9UKG9 612 aa12.65□□□□□ -0.38
RTN3-203ENST00000341307 PACSIN2Q9UNF0 486 aaPredicted RBP12.65□□□□□ -0.38
RTN3-203ENST00000341307 SPO11Q9Y5K1 396 aa12.65□□□□□ -0.38
RTN3-203ENST00000341307 NPHP3-ACAD11A0A0J9YXS1 232 aa12.64□□□□□ -0.39
RTN3-203ENST00000341307 GLTPD2A6NH11 291 aa12.64□□□□□ -0.39
RTN3-203ENST00000341307 SPDYE2BA6NHP3 402 aa12.64□□□□□ -0.39
RTN3-203ENST00000341307 F5H6K3 240 aa12.64□□□□□ -0.39
RTN3-203ENST00000341307 ZBTB5O15062 677 aa12.64□□□□□ -0.39
RTN3-203ENST00000341307 DAPK3O43293 454 aa12.64□□□□□ -0.39
RTN3-203ENST00000341307 ASMTLO95671 621 aa12.64□□□□□ -0.39
RTN3-203ENST00000341307 FTCDO95954 541 aa12.64□□□□□ -0.39
RTN3-203ENST00000341307 SPDYE6P0CI01 402 aa12.64□□□□□ -0.39
RTN3-203ENST00000341307 EPHB2P29323 1055 aa12.64□□□□□ -0.39
RTN3-203ENST00000341307 SERPINB3P29508 390 aa12.64□□□□□ -0.39
RTN3-203ENST00000341307 EIF4A3P38919 411 aaKnown RBP12.64□□□□□ -0.39
RTN3-203ENST00000341307 EPS15P42566 896 aa12.64□□□□□ -0.39
RTN3-203ENST00000341307 GALK1P51570 392 aa12.64□□□□□ -0.39
RTN3-203ENST00000341307 KLRC3Q07444 240 aa12.64□□□□□ -0.39
RTN3-203ENST00000341307 MAP7Q14244 749 aa12.64□□□□□ -0.39
RTN3-203ENST00000341307 GPATCH4Q5T3I0 446 aaKnown RBP12.64□□□□□ -0.39
RTN3-203ENST00000341307 THOC7Q6I9Y2 204 aaKnown RBP12.64□□□□□ -0.39
RTN3-203ENST00000341307 PHLDB3Q6NSJ2 640 aa12.64□□□□□ -0.39
RTN3-203ENST00000341307 DAAM2Q86T65 1068 aa12.64□□□□□ -0.39
RTN3-203ENST00000341307 ECHDC2Q86YB7 292 aa12.64□□□□□ -0.39
RTN3-203ENST00000341307 NOX5Q96PH1 765 aa12.64□□□□□ -0.39
RTN3-203ENST00000341307 TBC1D10AQ9BXI6 508 aa12.64□□□□□ -0.39
RTN3-203ENST00000341307 A0A1W2PRG0 241 aa12.64□□□□□ -0.39
RTN3-203ENST00000341307 ESYT2A0FGR8 921 aa12.64□□□□□ -0.39
RTN3-203ENST00000341307 USP17L15C9J2P7 530 aa12.64□□□□□ -0.39
RTN3-203ENST00000341307 USP17L13C9JLJ4 530 aa12.64□□□□□ -0.39
RTN3-203ENST00000341307 USP17L11C9JVI0 530 aa12.64□□□□□ -0.39
RTN3-203ENST00000341307 USP17L18D6R9N7 530 aa12.64□□□□□ -0.39
RTN3-203ENST00000341307 USP17L22D6RA61 530 aa12.64□□□□□ -0.39
RTN3-203ENST00000341307 USP17L17D6RBQ6 530 aa12.64□□□□□ -0.39
RTN3-203ENST00000341307 USP17L19D6RCP7 530 aa12.64□□□□□ -0.39
RTN3-203ENST00000341307 USP17L20D6RJB6 530 aa12.64□□□□□ -0.39
RTN3-203ENST00000341307 PABPC4LP0CB38 370 aaKnown RBP12.64□□□□□ -0.39
RTN3-203ENST00000341307 HOXD11P31277 338 aaPredicted RBP12.64□□□□□ -0.39
RTN3-203ENST00000341307 DNM2P50570 870 aa12.64□□□□□ -0.39
RTN3-203ENST00000341307 CLCN2P51788 898 aa12.64□□□□□ -0.39
RTN3-203ENST00000341307 GEMIN4P57678 1058 aaKnown RBP12.64□□□□□ -0.39
RTN3-203ENST00000341307 USP17L24Q0WX57 530 aa12.64□□□□□ -0.39
RTN3-203ENST00000341307 QRICH1Q2TAL8 776 aa12.64□□□□□ -0.39
RTN3-203ENST00000341307 USP17L6PQ6QN14 398 aa12.64□□□□□ -0.39
RTN3-203ENST00000341307 MARK2Q7KZI7 788 aaKnown RBP12.64□□□□□ -0.39
RTN3-203ENST00000341307 PDCD7Q8N8D1 485 aaKnown RBP12.64□□□□□ -0.39
RTN3-203ENST00000341307 METTL5Q9NRN9 209 aaKnown RBP12.64□□□□□ -0.39
RTN3-203ENST00000341307 GDAQ9Y2T3 454 aa12.64□□□□□ -0.39
RTN3-203ENST00000341307 PORP16435 677 aaPredicted RBP12.63□□□□□ -0.39
RTN3-203ENST00000341307 ECE1P42892 770 aa12.63□□□□□ -0.39
RTN3-203ENST00000341307 RBM26Q5T8P6 1007 aaKnown RBP12.63□□□□□ -0.39
RTN3-203ENST00000341307 RNF43Q68DV7 783 aa12.63□□□□□ -0.39
RTN3-203ENST00000341307 CIAPIN1Q6FI81 312 aa12.63□□□□□ -0.39
RTN3-203ENST00000341307 LRRC74BQ6ZQY2 392 aa12.63□□□□□ -0.39
RTN3-203ENST00000341307 TMEM179Q6ZVK1 233 aa12.63□□□□□ -0.39
RTN3-203ENST00000341307 NEK9Q8TD19 979 aa12.63□□□□□ -0.39
RTN3-203ENST00000341307 SLC7A6OSQ96CW6 309 aaPredicted RBP12.63□□□□□ -0.39
RTN3-203ENST00000341307 MYLK2Q9H1R3 596 aa12.63□□□□□ -0.39
RTN3-203ENST00000341307 DDX43Q9NXZ2 648 aaKnown RBP12.63□□□□□ -0.39
RTN3-203ENST00000341307 NYAP2Q9P242 653 aa12.63□□□□□ -0.39
RTN3-203ENST00000341307 LARSQ9P2J5 1176 aaKnown RBP12.63□□□□□ -0.39
RTN3-203ENST00000341307 HAO1Q9UJM8 370 aa12.63□□□□□ -0.39
RTN3-203ENST00000341307 ZNF711Q9Y462 761 aa12.63□□□□□ -0.39
RTN3-203ENST00000341307 H7C1D1 291 aa12.63□□□□□ -0.39
RTN3-203ENST00000341307 AKR1B10O60218 316 aa12.63□□□□□ -0.39
RTN3-203ENST00000341307 ENTPD3O75355 529 aa12.63□□□□□ -0.39
RTN3-203ENST00000341307 PALMO75781 387 aa12.63□□□□□ -0.39
RTN3-203ENST00000341307 LMNAP02545 664 aaKnown RBP12.63□□□□□ -0.39
RTN3-203ENST00000341307 PDGFRBP09619 1106 aa12.63□□□□□ -0.39
RTN3-203ENST00000341307 TROVE2P10155 538 aaKnown RBP eCLIP12.63□□□□□ -0.39
RTN3-203ENST00000341307 PLCG1P19174 1290 aa12.63□□□□□ -0.39
RTN3-203ENST00000341307 TARSP26639 723 aaKnown RBP12.63□□□□□ -0.39
RTN3-203ENST00000341307 HNRNPH3P31942 346 aaKnown RBP12.63□□□□□ -0.39
RTN3-203ENST00000341307 MAGEA1P43355 309 aa12.63□□□□□ -0.39
RTN3-203ENST00000341307 GMPSP49915 693 aaPredicted RBP12.63□□□□□ -0.39
RTN3-203ENST00000341307 NEK3P51956 506 aa12.63□□□□□ -0.39
RTN3-203ENST00000341307 PMS1P54277 932 aaKnown RBP12.63□□□□□ -0.39
RTN3-203ENST00000341307 ITGA7Q13683 1181 aa12.63□□□□□ -0.39
RTN3-203ENST00000341307 LRRC14Q15048 493 aa12.63□□□□□ -0.39
RTN3-203ENST00000341307 DLGAP5Q15398 846 aa12.63□□□□□ -0.39
RTN3-203ENST00000341307 SLC2A7Q6PXP3 512 aa12.63□□□□□ -0.39
RTN3-203ENST00000341307 CFAP61Q8NHU2 1237 aa12.63□□□□□ -0.39
RTN3-203ENST00000341307 SCFD2Q8WU76 684 aa12.63□□□□□ -0.39
RTN3-203ENST00000341307 SNX27Q96L92 541 aa12.63□□□□□ -0.39
RTN3-203ENST00000341307 ASCC2Q9H1I8 757 aaPredicted RBP12.63□□□□□ -0.39
RTN3-203ENST00000341307 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.63□□□□□ -0.39
RTN3-203ENST00000341307 HESX1Q9UBX0 185 aa12.63□□□□□ -0.39
RTN3-203ENST00000341307 ZNF70Q9UC06 446 aaPredicted RBP12.63□□□□□ -0.39
RTN3-203ENST00000341307 TDRKHQ9Y2W6 561 aaKnown RBP12.63□□□□□ -0.39
RTN3-203ENST00000341307 GTPBP6O43824 516 aaPredicted RBP12.62□□□□□ -0.39
RTN3-203ENST00000341307 NDUFB10O96000 172 aa12.62□□□□□ -0.39
RTN3-203ENST00000341307 RPN1P04843 607 aaKnown RBP12.62□□□□□ -0.39
RTN3-203ENST00000341307 NUDT17P0C025 328 aa12.62□□□□□ -0.39
RTN3-203ENST00000341307 IKQ13123 557 aaPredicted RBP12.62□□□□□ -0.39
RTN3-203ENST00000341307 MEI1Q5TIA1 1274 aa12.62□□□□□ -0.39
RTN3-203ENST00000341307 DLK2Q6UY11 383 aa12.62□□□□□ -0.39
RTN3-203ENST00000341307 SAMD7Q7Z3H4 446 aa12.62□□□□□ -0.39
RTN3-203ENST00000341307 CABP7Q86V35 215 aa12.62□□□□□ -0.39
RTN3-203ENST00000341307 GPIHBP1Q8IV16 184 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms