RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 EMSYQ7Z589 1322 aa10.86□□□□□ -0.67
CCDC88A-202ENST00000336838 BCAR1P56945 870 aa10.86□□□□□ -0.67
CCDC88A-202ENST00000336838 KBTBD12Q3ZCT8 623 aa10.86□□□□□ -0.67
CCDC88A-202ENST00000336838 SH3TC2Q8TF17 1288 aa10.86□□□□□ -0.67
CCDC88A-202ENST00000336838 AMACRQ9UHK6 382 aa10.86□□□□□ -0.67
CCDC88A-202ENST00000336838 REXO1L1PQ8IX06 675 aa10.86□□□□□ -0.67
CCDC88A-202ENST00000336838 TBC1D23Q9NUY8 699 aa10.86□□□□□ -0.67
CCDC88A-202ENST00000336838 CNTNAP5Q8WYK1 1306 aa10.86□□□□□ -0.67
CCDC88A-202ENST00000336838 STRNO43815 780 aa10.86□□□□□ -0.67
CCDC88A-202ENST00000336838 GHRP10912 638 aa10.86□□□□□ -0.67
CCDC88A-202ENST00000336838 VHLP40337 213 aa10.86□□□□□ -0.67
CCDC88A-202ENST00000336838 PCYT1AP49585 367 aa10.86□□□□□ -0.67
CCDC88A-202ENST00000336838 CUL3Q13618 768 aa10.86□□□□□ -0.67
CCDC88A-202ENST00000336838 C16orf86Q6ZW13 317 aa10.86□□□□□ -0.67
CCDC88A-202ENST00000336838 OR9Q1Q8NGQ5 310 aa10.86□□□□□ -0.67
CCDC88A-202ENST00000336838 TMEM8AQ9HCN3 771 aa10.86□□□□□ -0.67
CCDC88A-202ENST00000336838 ZFATQ9P243 1243 aa10.86□□□□□ -0.67
CCDC88A-202ENST00000336838 GPC3P51654 580 aa10.86□□□□□ -0.67
CCDC88A-202ENST00000336838 PEX3P56589 373 aa10.86□□□□□ -0.67
CCDC88A-202ENST00000336838 CXorf38Q8TB03 319 aa10.86□□□□□ -0.67
CCDC88A-202ENST00000336838 DDI1Q8WTU0 396 aa10.86□□□□□ -0.67
CCDC88A-202ENST00000336838 ATP6V1E2Q96A05 226 aa10.86□□□□□ -0.67
CCDC88A-202ENST00000336838 COBLO75128 1261 aa10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 RPS6KA4O75676 772 aa10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 DNAJC9Q8WXX5 260 aa10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 RMDN3Q96TC7 470 aa10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 GCLMP48507 274 aa10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 TTC39BQ5VTQ0 682 aaPredicted RBP10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 POTEGQ6S5H5 508 aa10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 RNF139Q8WU17 664 aa10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 ACAP3Q96P50 834 aa10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 MRPL1Q9BYD6 325 aaKnown RBP10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 PKD2L2Q9NZM6 624 aa10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 L1RE1Q9UN81 338 aa10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 ADGRA3Q8IWK6 1321 aa10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 DYTNA2CJ06 578 aa10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 SYCE1LA8MT33 242 aa10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 ZNF18P17022 549 aa10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 JAMLQ86YT9 394 aa10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 FAM193BQ96PV7 902 aaPredicted RBP10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 MMADHCQ9H3L0 296 aaPredicted RBP10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 KLHL8Q9P2G9 620 aaPredicted RBP10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 HADHAP40939 763 aa10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 STXBP2Q15833 593 aa10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 EFHC2Q5JST6 749 aa10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 FAM47EQ6ZV65 393 aa10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 NSUN4Q96CB9 384 aaKnown RBP10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 DYNLL2Q96FJ2 89 aa10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 MASTLQ96GX5 879 aa10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 ZCCHC17Q9NP64 241 aaKnown RBP10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 H3BRJ5 948 aa10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 TRPA1O75762 1119 aa10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 FXR1P51114 621 aaKnown RBP eCLIP10.85□□□□□ -0.673e-8■■■■□ 23.7
CCDC88A-202ENST00000336838 GPIHBP1Q8IV16 184 aa10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 SULF1Q8IWU6 871 aa10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 FAM149B1Q96BN6 582 aa10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 PCIF1Q9H4Z3 704 aa10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 PAK5Q9P286 719 aa10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 ACTN3Q08043 901 aaPredicted RBP10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 CYLC2Q14093 348 aaPredicted RBP10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 UBE2SQ16763 222 aa10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 TKFCQ3LXA3 575 aa10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 SUSD4Q5VX71 490 aa10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 SUGP1Q8IWZ8 645 aaKnown RBP10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 PCYOX1LQ8NBM8 494 aa10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 BEST2Q8NFU1 509 aa10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 PSPC1Q8WXF1 523 aaKnown RBP10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 ZNF560Q96MR9 790 aa10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 PHACTR1Q9C0D0 580 aa10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 GTF3C4Q9UKN8 822 aa10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 GJA3Q9Y6H8 435 aa10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 ARHGAP23Q9P227 1491 aa10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 SCFD1Q8WVM8 642 aa10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 FAM161BQ96MY7 647 aa10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 GPBP1L1Q9HC44 474 aaPredicted RBP10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 KBTBD4Q9NVX7 518 aa10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 CA8P35219 290 aa10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 DSG1Q02413 1049 aa10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 NCAPHQ15003 741 aa10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 PTPAQ15257 358 aa10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 TRIP13Q15645 432 aaPredicted RBP10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 TPCN2Q8NHX9 752 aa10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 RIN3Q8TB24 985 aa10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 MRPL46Q9H2W6 279 aaKnown RBP10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 PAIP2BQ9ULR5 123 aaKnown RBP10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 VPS9D1Q9Y2B5 631 aa10.85□□□□□ -0.67
CCDC88A-202ENST00000336838 SAT1P21673 171 aa10.84□□□□□ -0.67
CCDC88A-202ENST00000336838 CTTNQ14247 550 aaKnown RBP10.84□□□□□ -0.67
CCDC88A-202ENST00000336838 ESYT3A0FGR9 886 aa10.84□□□□□ -0.67
CCDC88A-202ENST00000336838 DENND3A2RUS2 1198 aa10.84□□□□□ -0.67
CCDC88A-202ENST00000336838 DIAPH2O60879 1101 aa10.84□□□□□ -0.67
CCDC88A-202ENST00000336838 KIF19Q2TAC6 998 aa10.84□□□□□ -0.67
CCDC88A-202ENST00000336838 GLYCTKQ8IVS8 523 aa10.84□□□□□ -0.67
CCDC88A-202ENST00000336838 DCLRE1BQ9H816 532 aa10.84□□□□□ -0.67
CCDC88A-202ENST00000336838 TRIM45Q9H8W5 580 aaPredicted RBP10.84□□□□□ -0.67
CCDC88A-202ENST00000336838 PRAMEF22A3QJZ6 481 aa10.84□□□□□ -0.67
CCDC88A-202ENST00000336838 CYP19A1P11511 503 aaPredicted RBP10.84□□□□□ -0.67
CCDC88A-202ENST00000336838 GYS2P54840 703 aa10.84□□□□□ -0.67
CCDC88A-202ENST00000336838 PSMC1P62191 440 aaKnown RBP10.84□□□□□ -0.67
CCDC88A-202ENST00000336838 MYCBPAPQ8TBZ2 947 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms