RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 TLE6Q9H808 572 aa15.3■□□□□ 0.04
LIMS1-201ENST00000332345 TMEM206Q9H813 350 aa15.3■□□□□ 0.04
LIMS1-201ENST00000332345 PLEKHA5Q9HAU0 1116 aa15.3■□□□□ 0.04
LIMS1-201ENST00000332345 CHMP5Q9NZZ3 219 aa15.3■□□□□ 0.04
LIMS1-201ENST00000332345 THEGQ9P2T0 379 aa15.3■□□□□ 0.04
LIMS1-201ENST00000332345 PRG3Q9Y2Y8 225 aaPredicted RBP15.3■□□□□ 0.04
LIMS1-201ENST00000332345 SPTBN5Q9NRC6 3674 aaKnown RBP15.29■□□□□ 0.04
LIMS1-201ENST00000332345 REV3LO60673 3130 aa15.29■□□□□ 0.04
LIMS1-201ENST00000332345 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.29■□□□□ 0.04
LIMS1-201ENST00000332345 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP15.29■□□□□ 0.04
LIMS1-201ENST00000332345 SMIM28A0A1B0GU29 152 aa15.29■□□□□ 0.04
LIMS1-201ENST00000332345 TADA2AO75478 443 aa15.29■□□□□ 0.04
LIMS1-201ENST00000332345 MRPS5P82675 430 aaKnown RBP15.29■□□□□ 0.04
LIMS1-201ENST00000332345 SMC1AQ14683 1233 aaKnown RBP15.29■□□□□ 0.04
LIMS1-201ENST00000332345 PLPP4Q5VZY2 271 aa15.29■□□□□ 0.04
LIMS1-201ENST00000332345 TMEM173Q86WV6 379 aaPredicted RBP15.29■□□□□ 0.04
LIMS1-201ENST00000332345 MRPL43Q8N983 215 aaKnown RBP15.29■□□□□ 0.04
LIMS1-201ENST00000332345 TMEM87AQ8NBN3 555 aa15.29■□□□□ 0.04
LIMS1-201ENST00000332345 CDCA3Q99618 268 aaPredicted RBP15.29■□□□□ 0.04
LIMS1-201ENST00000332345 MSTO1Q9BUK6 570 aa15.29■□□□□ 0.04
LIMS1-201ENST00000332345 BLZF1Q9H2G9 400 aa15.29■□□□□ 0.04
LIMS1-201ENST00000332345 PRDM6Q9NQX0 595 aa15.29■□□□□ 0.04
LIMS1-201ENST00000332345 SLC38A7Q9NVC3 462 aa15.29■□□□□ 0.04
LIMS1-201ENST00000332345 STYXL1Q9Y6J8 313 aa15.29■□□□□ 0.04
LIMS1-201ENST00000332345 ANKRD63C9JTQ0 380 aa15.28■□□□□ 0.04
LIMS1-201ENST00000332345 ZNF202O95125 648 aa15.28■□□□□ 0.04
LIMS1-201ENST00000332345 MYBP10242 640 aa15.28■□□□□ 0.04
LIMS1-201ENST00000332345 KCNE1P15382 129 aa15.28■□□□□ 0.04
LIMS1-201ENST00000332345 NRIP1P48552 1158 aa15.28■□□□□ 0.04
LIMS1-201ENST00000332345 HYAL1Q12794 435 aa15.28■□□□□ 0.04
LIMS1-201ENST00000332345 CUL4BQ13620 913 aa15.28■□□□□ 0.04
LIMS1-201ENST00000332345 HSP90AA2PQ14568 343 aaPredicted RBP15.28■□□□□ 0.04
LIMS1-201ENST00000332345 SLC10A6Q3KNW5 377 aa15.28■□□□□ 0.04
LIMS1-201ENST00000332345 SEZ6Q53EL9 994 aa15.28■□□□□ 0.04
LIMS1-201ENST00000332345 KANK3Q6NY19 840 aa15.28■□□□□ 0.04
LIMS1-201ENST00000332345 EP400NLQ6ZTU2 488 aa15.28■□□□□ 0.04
LIMS1-201ENST00000332345 RBM23Q86U06 439 aaKnown RBP15.28■□□□□ 0.04
LIMS1-201ENST00000332345 BCL7CQ8WUZ0 217 aaPredicted RBP15.28■□□□□ 0.04
LIMS1-201ENST00000332345 POMGNT1Q8WZA1 660 aa15.28■□□□□ 0.04
LIMS1-201ENST00000332345 PABPC5Q96DU9 382 aaKnown RBP15.28■□□□□ 0.04
LIMS1-201ENST00000332345 DDX27Q96GQ7 796 aaKnown RBP15.28■□□□□ 0.04
LIMS1-201ENST00000332345 SNX27Q96L92 541 aa15.28■□□□□ 0.04
LIMS1-201ENST00000332345 UROC1Q96N76 676 aa15.28■□□□□ 0.04
LIMS1-201ENST00000332345 PPP1R10Q96QC0 940 aaKnown RBP15.28■□□□□ 0.04
LIMS1-201ENST00000332345 TSPAN18Q96SJ8 248 aa15.28■□□□□ 0.04
LIMS1-201ENST00000332345 HAPLN2Q9GZV7 340 aa15.28■□□□□ 0.04
LIMS1-201ENST00000332345 CXCL16Q9H2A7 254 aa15.28■□□□□ 0.04
LIMS1-201ENST00000332345 RPF1Q9H9Y2 349 aaKnown RBP15.28■□□□□ 0.04
LIMS1-201ENST00000332345 CNTN3Q9P232 1028 aa15.28■□□□□ 0.04
LIMS1-201ENST00000332345 AGO2Q9UKV8 859 aaKnown RBP15.28■□□□□ 0.04
LIMS1-201ENST00000332345 SSX2IPQ9Y2D8 614 aa15.28■□□□□ 0.04
LIMS1-201ENST00000332345 GTF3C5Q9Y5Q8 519 aaPredicted RBP15.28■□□□□ 0.04
LIMS1-201ENST00000332345 ATG2AQ2TAZ0 1938 aa15.27■□□□□ 0.04
LIMS1-201ENST00000332345 CASTOR2A6NHX0 329 aa15.27■□□□□ 0.04
LIMS1-201ENST00000332345 EIF3DO15371 548 aaKnown RBP eCLIP15.27■□□□□ 0.04
LIMS1-201ENST00000332345 PRPF6O94906 941 aaKnown RBP15.27■□□□□ 0.04
LIMS1-201ENST00000332345 CTSAP10619 480 aa15.27■□□□□ 0.04
LIMS1-201ENST00000332345 CASP1P29466 404 aa15.27■□□□□ 0.04
LIMS1-201ENST00000332345 CA8P35219 290 aa15.27■□□□□ 0.04
LIMS1-201ENST00000332345 CASP5P51878 434 aa15.27■□□□□ 0.04
LIMS1-201ENST00000332345 POU5F1Q01860 360 aaKnown RBP15.27■□□□□ 0.04
LIMS1-201ENST00000332345 KCNA1Q09470 495 aa15.27■□□□□ 0.04
LIMS1-201ENST00000332345 PSMD2Q13200 908 aa15.27■□□□□ 0.04
LIMS1-201ENST00000332345 ADAM15Q13444 863 aa15.27■□□□□ 0.04
LIMS1-201ENST00000332345 NAB2Q15742 525 aa15.27■□□□□ 0.04
LIMS1-201ENST00000332345 GLRA4Q5JXX5 417 aa15.27■□□□□ 0.04
LIMS1-201ENST00000332345 FAM26FQ5R3K3 315 aa15.27■□□□□ 0.04
LIMS1-201ENST00000332345 SLC39A4Q6P5W5 647 aa15.27■□□□□ 0.04
LIMS1-201ENST00000332345 DCLRE1AQ6PJP8 1040 aa15.27■□□□□ 0.04
LIMS1-201ENST00000332345 ADGRD2Q7Z7M1 963 aa15.27■□□□□ 0.04
LIMS1-201ENST00000332345 CD302Q8IX05 232 aa15.27■□□□□ 0.04
LIMS1-201ENST00000332345 GRAMD1CQ8IYS0 662 aa15.27■□□□□ 0.04
LIMS1-201ENST00000332345 EFHBQ8N7U6 833 aa15.27■□□□□ 0.04
LIMS1-201ENST00000332345 CCDC47Q96A33 483 aaKnown RBP15.27■□□□□ 0.04
LIMS1-201ENST00000332345 ZBP1Q9H171 429 aa15.27■□□□□ 0.04
LIMS1-201ENST00000332345 UBE2ZQ9H832 354 aaPredicted RBP15.27■□□□□ 0.04
LIMS1-201ENST00000332345 CLDND1Q9NY35 253 aa15.27■□□□□ 0.04
LIMS1-201ENST00000332345 ADAM28Q9UKQ2 775 aa15.27■□□□□ 0.04
LIMS1-201ENST00000332345 PCDHGC5Q9Y5F6 944 aa15.27■□□□□ 0.04
LIMS1-201ENST00000332345 IRAK3Q9Y616 596 aa15.27■□□□□ 0.04
LIMS1-201ENST00000332345 UNC80Q8N2C7 3258 aa15.27■□□□□ 0.03
LIMS1-201ENST00000332345 BRWD1Q9NSI6 2320 aa15.26■□□□□ 0.03
LIMS1-201ENST00000332345 TTC26A0AVF1 554 aa15.26■□□□□ 0.03
LIMS1-201ENST00000332345 C2orf71A6NGG8 1288 aa15.26■□□□□ 0.03
LIMS1-201ENST00000332345 HIDE1A8MVS5 230 aa15.26■□□□□ 0.03
LIMS1-201ENST00000332345 PER2O15055 1255 aa15.26■□□□□ 0.03
LIMS1-201ENST00000332345 LDHAP00338 332 aaKnown RBP15.26■□□□□ 0.03
LIMS1-201ENST00000332345 SOD2P04179 222 aa15.26■□□□□ 0.03
LIMS1-201ENST00000332345 CXCL8P10145 99 aa15.26■□□□□ 0.03
LIMS1-201ENST00000332345 GARTP22102 1010 aa15.26■□□□□ 0.03
LIMS1-201ENST00000332345 RPL9P32969 192 aaKnown RBP15.26■□□□□ 0.03
LIMS1-201ENST00000332345 PPP2R3AQ06190 1150 aa15.26■□□□□ 0.03
LIMS1-201ENST00000332345 COL19A1Q14993 1142 aa15.26■□□□□ 0.03
LIMS1-201ENST00000332345 CTC1Q2NKJ3 1217 aa15.26■□□□□ 0.03
LIMS1-201ENST00000332345 KIAA1841Q6NSI8 718 aa15.26■□□□□ 0.03
LIMS1-201ENST00000332345 KRBA2Q6ZNG9 492 aa15.26■□□□□ 0.03
LIMS1-201ENST00000332345 ZNF507Q8TCN5 953 aa15.26■□□□□ 0.03
LIMS1-201ENST00000332345 RABGGTAQ92696 567 aa15.26■□□□□ 0.03
LIMS1-201ENST00000332345 HPS3Q969F9 1004 aa15.26■□□□□ 0.03
LIMS1-201ENST00000332345 ZMAT2Q96NC0 199 aaKnown RBP15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms