RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 RXRGP48443 463 aa15.01□□□□□ -0.01
COL7A1-201ENST00000328333 PCNX4Q63HM2 1172 aa15.01□□□□□ -0.01
COL7A1-201ENST00000328333 CCDC80Q76M96 950 aa15.01□□□□□ -0.01
COL7A1-201ENST00000328333 PCDHB8Q9UN66 801 aa15.01□□□□□ -0.01
COL7A1-201ENST00000328333 MAFGO15525 162 aa15.01□□□□□ -0.01
COL7A1-201ENST00000328333 PDE9AO76083 593 aa15.01□□□□□ -0.01
COL7A1-201ENST00000328333 MYL2P10916 166 aa15.01□□□□□ -0.01
COL7A1-201ENST00000328333 DCTN2Q13561 401 aaKnown RBP15.01□□□□□ -0.01
COL7A1-201ENST00000328333 ZFP42Q96MM3 310 aa15.01□□□□□ -0.01
COL7A1-201ENST00000328333 MSTO1Q9BUK6 570 aa15.01□□□□□ -0.01
COL7A1-201ENST00000328333 OSBPP22059 807 aa15.01□□□□□ -0.01
COL7A1-201ENST00000328333 PRAMEP78395 509 aa15.01□□□□□ -0.01
COL7A1-201ENST00000328333 NLRP10Q86W26 655 aa15.01□□□□□ -0.01
COL7A1-201ENST00000328333 CCDC126Q96EE4 140 aa15.01□□□□□ -0.01
COL7A1-201ENST00000328333 HINFPQ9BQA5 517 aa15.01□□□□□ -0.01
COL7A1-201ENST00000328333 TINF2Q9BSI4 451 aa15.01□□□□□ -0.01
COL7A1-201ENST00000328333 MMTAG2Q9BU76 263 aaKnown RBP15.01□□□□□ -0.01
COL7A1-201ENST00000328333 KCNB1Q14721 858 aa15.01□□□□□ -0.01
COL7A1-201ENST00000328333 DLGAP5Q15398 846 aa15.01□□□□□ -0.01
COL7A1-201ENST00000328333 RWDD4Q6NW29 188 aaKnown RBP15.01□□□□□ -0.01
COL7A1-201ENST00000328333 TRAPPC9Q96Q05 1148 aa15.01□□□□□ -0.01
COL7A1-201ENST00000328333 A8MXQ7 604 aa15.01□□□□□ -0.01
COL7A1-201ENST00000328333 INO80B-WBP1J3KQ70 363 aa15.01□□□□□ -0.01
COL7A1-201ENST00000328333 EFHC2Q5JST6 749 aa15.01□□□□□ -0.01
COL7A1-201ENST00000328333 RNF219Q5W0B1 726 aaPredicted RBP15.01□□□□□ -0.01
COL7A1-201ENST00000328333 FOPNLQ96NB1 174 aa15.01□□□□□ -0.01
COL7A1-201ENST00000328333 INO80BQ9C086 356 aaPredicted RBP15.01□□□□□ -0.01
COL7A1-201ENST00000328333 TMEM161AQ9NX61 479 aa15.01□□□□□ -0.01
COL7A1-201ENST00000328333 RHPN2Q8IUC4 686 aa15.01□□□□□ -0.01
COL7A1-201ENST00000328333 RCOR2Q8IZ40 523 aa15.01□□□□□ -0.01
COL7A1-201ENST00000328333 KLHL25Q9H0H3 589 aa15.01□□□□□ -0.01
COL7A1-201ENST00000328333 JAG2Q9Y219 1238 aa15.01□□□□□ -0.01
COL7A1-201ENST00000328333 MTSS1O43312 755 aa15□□□□□ -0.01
COL7A1-201ENST00000328333 BCAR1P56945 870 aa15□□□□□ -0.01
COL7A1-201ENST00000328333 FAM47AQ5JRC9 791 aa15□□□□□ -0.01
COL7A1-201ENST00000328333 CYB5D1Q6P9G0 228 aa15□□□□□ -0.01
COL7A1-201ENST00000328333 SFR1Q86XK3 245 aa15□□□□□ -0.01
COL7A1-201ENST00000328333 P3H2Q8IVL5 708 aa15□□□□□ -0.01
COL7A1-201ENST00000328333 PPHLN1Q8NEY8 458 aaKnown RBP15□□□□□ -0.01
COL7A1-201ENST00000328333 KCND2Q9NZV8 630 aa15□□□□□ -0.01
COL7A1-201ENST00000328333 ARIH1Q9Y4X5 557 aaPredicted RBP15□□□□□ -0.01
COL7A1-201ENST00000328333 FRMPD2Q68DX3 1309 aaPredicted RBP15□□□□□ -0.01
COL7A1-201ENST00000328333 PSMD14O00487 310 aa15□□□□□ -0.01
COL7A1-201ENST00000328333 KCNA2P16389 499 aa15□□□□□ -0.01
COL7A1-201ENST00000328333 EXT2Q93063 718 aa15□□□□□ -0.01
COL7A1-201ENST00000328333 AIPL1Q9NZN9 384 aa15□□□□□ -0.01
COL7A1-201ENST00000328333 ADGRL3Q9HAR2 1447 aa15□□□□□ -0.01
COL7A1-201ENST00000328333 SRP72O76094 671 aaKnown RBP15□□□□□ -0.01
COL7A1-201ENST00000328333 FBXW4P57775 412 aa15□□□□□ -0.01
COL7A1-201ENST00000328333 PTPN12Q05209 780 aaKnown RBP15□□□□□ -0.01
COL7A1-201ENST00000328333 SLC20A2Q08357 652 aa15□□□□□ -0.01
COL7A1-201ENST00000328333 SGSM1Q2NKQ1 1148 aa15□□□□□ -0.01
COL7A1-201ENST00000328333 TTC39BQ5VTQ0 682 aaPredicted RBP15□□□□□ -0.01
COL7A1-201ENST00000328333 TFCP2L1Q9NZI6 479 aa15□□□□□ -0.01
COL7A1-201ENST00000328333 CLEC11AQ9Y240 323 aa15□□□□□ -0.01
COL7A1-201ENST00000328333 SSU72P8A0A1W2PR75 194 aa15□□□□□ -0.01
COL7A1-201ENST00000328333 CENPXA8MT69 81 aa15□□□□□ -0.01
COL7A1-201ENST00000328333 RNF103O00237 685 aa15□□□□□ -0.01
COL7A1-201ENST00000328333 IZUMO3Q5VZ72 239 aa15□□□□□ -0.01
COL7A1-201ENST00000328333 ARHGAP22Q7Z5H3 698 aa15□□□□□ -0.01
COL7A1-201ENST00000328333 FAM153AQ9UHL3 310 aa15□□□□□ -0.01
COL7A1-201ENST00000328333 SF3B1O75533 1304 aaKnown RBP eCLIP15□□□□□ -0.01
COL7A1-201ENST00000328333 H0YIN7 160 aa15□□□□□ -0.01
COL7A1-201ENST00000328333 IGF2BP3O00425 579 aaKnown RBP eCLIP15□□□□□ -0.01
COL7A1-201ENST00000328333 CALB2P22676 271 aa15□□□□□ -0.01
COL7A1-201ENST00000328333 TTKP33981 857 aa15□□□□□ -0.01
COL7A1-201ENST00000328333 ITGA1P56199 1179 aa15□□□□□ -0.01
COL7A1-201ENST00000328333 KDM7AQ6ZMT4 941 aa15□□□□□ -0.01
COL7A1-201ENST00000328333 SERPINB12Q96P63 405 aa15□□□□□ -0.01
COL7A1-201ENST00000328333 CPSF1Q10570 1443 aaKnown RBP15□□□□□ -0.01
COL7A1-201ENST00000328333 ARSEP51690 589 aa15□□□□□ -0.01
COL7A1-201ENST00000328333 PRPF39Q86UA1 669 aaKnown RBP15□□□□□ -0.01
COL7A1-201ENST00000328333 LCORLQ8N3X6 602 aa15□□□□□ -0.01
COL7A1-201ENST00000328333 C19orf18Q8NEA5 215 aa15□□□□□ -0.01
COL7A1-201ENST00000328333 RMND5BQ96G75 393 aaPredicted RBP15□□□□□ -0.01
COL7A1-201ENST00000328333 RGL1Q9NZL6 768 aa15□□□□□ -0.01
COL7A1-201ENST00000328333 RIMBP2O15034 1052 aa15□□□□□ -0.01
COL7A1-201ENST00000328333 ATP1A3P13637 1013 aa15□□□□□ -0.01
COL7A1-201ENST00000328333 YY1P25490 414 aa15□□□□□ -0.01
COL7A1-201ENST00000328333 G2E3Q7L622 706 aa15□□□□□ -0.01
COL7A1-201ENST00000328333 H2AFY2Q9P0M6 372 aaPredicted RBP15□□□□□ -0.01
COL7A1-201ENST00000328333 ZFP1Q6P2D0 407 aa14.99□□□□□ -0.01
COL7A1-201ENST00000328333 KRT73Q86Y46 540 aa14.99□□□□□ -0.01
COL7A1-201ENST00000328333 GUF1Q8N442 669 aaKnown RBP14.99□□□□□ -0.01
COL7A1-201ENST00000328333 ZNF594Q96JF6 807 aaPredicted RBP14.99□□□□□ -0.01
COL7A1-201ENST00000328333 CEP170P1Q96L14 293 aa14.99□□□□□ -0.01
COL7A1-201ENST00000328333 RBM15Q96T37 977 aaKnown RBP eCLIP14.99□□□□□ -0.01
COL7A1-201ENST00000328333 FRMD8P1Q9BZ68 369 aaPredicted RBP14.99□□□□□ -0.01
COL7A1-201ENST00000328333 RIC8BQ9NVN3 520 aa14.99□□□□□ -0.01
COL7A1-201ENST00000328333 K7ERI5 159 aa14.99□□□□□ -0.01
COL7A1-201ENST00000328333 RPS8P62241 208 aaKnown RBP14.99□□□□□ -0.01
COL7A1-201ENST00000328333 KRT17Q04695 432 aa14.99□□□□□ -0.01
COL7A1-201ENST00000328333 GFPT1Q06210 699 aaPredicted RBP14.99□□□□□ -0.01
COL7A1-201ENST00000328333 EPS8Q12929 822 aa14.99□□□□□ -0.01
COL7A1-201ENST00000328333 RCN1Q15293 331 aa14.99□□□□□ -0.01
COL7A1-201ENST00000328333 SLFN13Q68D06 897 aa14.99□□□□□ -0.01
COL7A1-201ENST00000328333 KRT27Q7Z3Y8 459 aa14.99□□□□□ -0.01
COL7A1-201ENST00000328333 DHX40Q8IX18 779 aaKnown RBP14.99□□□□□ -0.01
COL7A1-201ENST00000328333 COPG2Q9UBF2 871 aa14.99□□□□□ -0.01
COL7A1-201ENST00000328333 CHMP2BQ9UQN3 213 aa14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 75.2 ms