RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 SUPT3HB4E1H0 165 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 PCCAP05165 728 aaPredicted RBP8.32□□□□□ -1.08
CIITA-201ENST00000324288 DUX4L2P0CJ85 424 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 DUX4L3P0CJ86 424 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 DUX4L4P0CJ87 422 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 DUX4L5P0CJ88 424 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 DUX4L6P0CJ89 424 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 DUX4L7P0CJ90 424 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 IMPDH2P12268 514 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 AKR1B1P15121 316 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 IFNA8P32881 189 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 PSMC6P62333 389 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 DDI2Q5TDH0 399 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 ADCK2Q7Z695 626 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 PCMTD2Q9NV79 361 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 TMEM260Q9NX78 707 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 DUX4Q9UBX2 424 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 ZMYM3Q14202 1370 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 POTEFA5A3E0 1075 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 POTEIP0CG38 1075 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 LONRF1Q17RB8 773 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 POTEGQ6S5H5 508 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 POTEEQ6S8J3 1075 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 GPR141Q7Z602 305 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 THEM5Q8N1Q8 247 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 MAP4K1Q92918 833 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 POTEB3A0JP26 581 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 POTECB2RU33 542 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 TPST1O60507 370 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 PHKG2P15735 406 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 PPP3CCP48454 512 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 LRRC74AQ0VAA2 488 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 POTEBQ6S5H4 581 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 AK8Q96MA6 479 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 AIPL1Q9NZN9 384 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 NPHP3-ACAD11A0A0J9YXS1 232 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 SMAPO00193 183 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 RAB14P61106 215 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 STX3Q13277 289 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 FAM196AQ6ZSG2 479 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 RNF26Q9BY78 433 aaPredicted RBP8.32□□□□□ -1.08
CIITA-201ENST00000324288 DHX35Q9H5Z1 703 aaKnown RBP8.32□□□□□ -1.08
CIITA-201ENST00000324288 CYTH3O43739 400 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 PPARGP37231 505 aaPredicted RBP8.32□□□□□ -1.08
CIITA-201ENST00000324288 HSPA9P38646 679 aaKnown RBP8.32□□□□□ -1.08
CIITA-201ENST00000324288 COG1Q8WTW3 980 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 MPP4Q96JB8 637 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 AGAP3Q96P47 875 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 KLF6Q99612 283 aaPredicted RBP8.32□□□□□ -1.08
CIITA-201ENST00000324288 SPRTNQ9H040 489 aaPredicted RBP8.32□□□□□ -1.08
CIITA-201ENST00000324288 FAM187AA6NFU0 413 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 SESN2P58004 480 aaPredicted RBP8.32□□□□□ -1.08
CIITA-201ENST00000324288 ROR1Q01973 937 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 ZSWIM5Q9P217 1185 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 ZNF212Q9UDV6 495 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 FAM135BQ49AJ0 1406 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 TYK2P29597 1187 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 ARSEP51690 589 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 RCN1Q15293 331 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 ISLR2Q6UXK2 745 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 DHX40Q8IX18 779 aaKnown RBP8.32□□□□□ -1.08
CIITA-201ENST00000324288 UXS1Q8NBZ7 420 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 SCG3Q8WXD2 468 aaKnown RBP8.32□□□□□ -1.08
CIITA-201ENST00000324288 SNF8Q96H20 258 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 C9orf72Q96LT7 481 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 POLR3FQ9H1D9 316 aaPredicted RBP8.32□□□□□ -1.08
CIITA-201ENST00000324288 BABAM1Q9NWV8 329 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 SPATA2Q9UM82 520 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 GCC2Q8IWJ2 1684 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 CCND1P24385 295 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 CUL4AQ13619 759 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 C1orf131Q8NDD1 294 aaKnown RBP8.32□□□□□ -1.08
CIITA-201ENST00000324288 CYP26B1Q9NR63 512 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 KPNA7A9QM74 516 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 STRNO43815 780 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 ZNF189O75820 626 aaPredicted RBP8.31□□□□□ -1.08
CIITA-201ENST00000324288 PYGMP11217 842 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 CDK8P49336 464 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 PATL1Q86TB9 770 aaKnown RBP8.31□□□□□ -1.08
CIITA-201ENST00000324288 ARL10Q8N8L6 244 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 SRPK1Q96SB4 655 aaKnown RBP8.31□□□□□ -1.08
CIITA-201ENST00000324288 RAVER2Q9HCJ3 691 aaKnown RBP8.31□□□□□ -1.08
CIITA-201ENST00000324288 KRT38O76015 456 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 KLHL18O94889 574 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 ADD2P35612 726 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 GPC3P51654 580 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 CCDC149Q6ZUS6 474 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 RMDN1Q96DB5 314 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 ZBTB1Q9Y2K1 713 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 CCDC188H7C350 402 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 PPP1R37O75864 691 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 IREB2P48200 963 aaKnown RBP8.31□□□□□ -1.08
CIITA-201ENST00000324288 SLC10A5Q5PT55 438 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 PADI6Q6TGC4 694 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 HORMAD1Q86X24 394 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 OR8H2Q8N162 312 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 NSL1Q96IY1 281 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 USP17L15C9J2P7 530 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 USP17L13C9JLJ4 530 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 USP17L11C9JVI0 530 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms