RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 SPATA1Q5VX52 437 aa19.74■□□□□ 0.75
HMGA1-201ENST00000311487 IRF2BP1Q8IU81 584 aa19.74■□□□□ 0.75
HMGA1-201ENST00000311487 FAM186BQ8IYM0 893 aa19.74■□□□□ 0.75
HMGA1-201ENST00000311487 ZMAT2Q96NC0 199 aaKnown RBP19.74■□□□□ 0.75
HMGA1-201ENST00000311487 TRAIPQ9BWF2 469 aa19.74■□□□□ 0.75
HMGA1-201ENST00000311487 RSAD1Q9HA92 442 aa19.74■□□□□ 0.75
HMGA1-201ENST00000311487 TRIP11Q15643 1979 aa19.74■□□□□ 0.75
HMGA1-201ENST00000311487 ZNF623O75123 536 aa19.74■□□□□ 0.75
HMGA1-201ENST00000311487 TRIM49P0CI25 452 aa19.74■□□□□ 0.75
HMGA1-201ENST00000311487 TRIM49CP0CI26 452 aa19.74■□□□□ 0.75
HMGA1-201ENST00000311487 RAB27AP51159 221 aa19.74■□□□□ 0.75
HMGA1-201ENST00000311487 SCNN1GP51170 649 aa19.74■□□□□ 0.75
HMGA1-201ENST00000311487 GUCY2FP51841 1108 aa19.74■□□□□ 0.75
HMGA1-201ENST00000311487 YARSP54577 528 aaKnown RBP19.74■□□□□ 0.75
HMGA1-201ENST00000311487 MYL5Q02045 173 aa19.74■□□□□ 0.75
HMGA1-201ENST00000311487 IQCB1Q15051 598 aa19.74■□□□□ 0.75
HMGA1-201ENST00000311487 CHRDL2Q6WN34 429 aa19.74■□□□□ 0.75
HMGA1-201ENST00000311487 APBB1IPQ7Z5R6 666 aaPredicted RBP19.74■□□□□ 0.75
HMGA1-201ENST00000311487 MRPL10Q7Z7H8 261 aaKnown RBP19.74■□□□□ 0.75
HMGA1-201ENST00000311487 C12orf56Q8IXR9 622 aa19.74■□□□□ 0.75
HMGA1-201ENST00000311487 CRIPAKQ8N1N5 446 aa19.74■□□□□ 0.75
HMGA1-201ENST00000311487 ENOX1Q8TC92 643 aaKnown RBP19.74■□□□□ 0.75
HMGA1-201ENST00000311487 HERVK_113Q902F9 699 aa19.74■□□□□ 0.75
HMGA1-201ENST00000311487 TOP1MTQ969P6 601 aa19.74■□□□□ 0.75
HMGA1-201ENST00000311487 TMEM161AQ9NX61 479 aa19.74■□□□□ 0.75
HMGA1-201ENST00000311487 CGNQ9P2M7 1197 aaKnown RBP19.74■□□□□ 0.75
HMGA1-201ENST00000311487 SLC4A7Q9Y6M7 1214 aa19.74■□□□□ 0.75
HMGA1-201ENST00000311487 PTPRJQ12913 1337 aa19.73■□□□□ 0.75
HMGA1-201ENST00000311487 BECN2A8MW95 431 aa19.73■□□□□ 0.75
HMGA1-201ENST00000311487 BAIAP3O94812 1187 aa19.73■□□□□ 0.75
HMGA1-201ENST00000311487 SNRPFP62306 86 aaKnown RBP19.73■□□□□ 0.75
HMGA1-201ENST00000311487 CCDC40Q4G0X9 1142 aa19.73■□□□□ 0.75
HMGA1-201ENST00000311487 SLC9A9Q8IVB4 645 aa19.73■□□□□ 0.75
HMGA1-201ENST00000311487 GSTCDQ8NEC7 633 aa19.73■□□□□ 0.75
HMGA1-201ENST00000311487 C18orf25Q96B23 403 aaPredicted RBP19.73■□□□□ 0.75
HMGA1-201ENST00000311487 ELMO3Q96BJ8 720 aa19.73■□□□□ 0.75
HMGA1-201ENST00000311487 FBXL18Q96ME1 805 aa19.73■□□□□ 0.75
HMGA1-201ENST00000311487 HSD3B7Q9H2F3 369 aa19.73■□□□□ 0.75
HMGA1-201ENST00000311487 TBKBP1A7MCY6 615 aa19.72■□□□□ 0.75
HMGA1-201ENST00000311487 OFD1O75665 1012 aa19.72■□□□□ 0.75
HMGA1-201ENST00000311487 LDHAP00338 332 aaKnown RBP19.72■□□□□ 0.75
HMGA1-201ENST00000311487 NFICP08651 508 aa19.72■□□□□ 0.75
HMGA1-201ENST00000311487 ATP1A3P13637 1013 aa19.72■□□□□ 0.75
HMGA1-201ENST00000311487 MYOGP15173 224 aa19.72■□□□□ 0.75
HMGA1-201ENST00000311487 PSMC2P35998 433 aaKnown RBP19.72■□□□□ 0.75
HMGA1-201ENST00000311487 CYP24A1Q07973 514 aa19.72■□□□□ 0.75
HMGA1-201ENST00000311487 DCAF17Q5H9S7 520 aaPredicted RBP19.72■□□□□ 0.75
HMGA1-201ENST00000311487 JADE1Q6IE81 842 aa19.72■□□□□ 0.75
HMGA1-201ENST00000311487 PGBD4Q96DM1 585 aa19.72■□□□□ 0.75
HMGA1-201ENST00000311487 ZBED2Q9BTP6 218 aa19.72■□□□□ 0.75
HMGA1-201ENST00000311487 GOLGA2P5Q9HBQ8 144 aa19.72■□□□□ 0.75
HMGA1-201ENST00000311487 UTP3Q9NQZ2 479 aaKnown RBP eCLIP19.72■□□□□ 0.751e-6■■■■■ 47.4
HMGA1-201ENST00000311487 ESPNB1AK53 854 aa19.72■□□□□ 0.75
HMGA1-201ENST00000311487 PTGESO14684 152 aa19.72■□□□□ 0.75
HMGA1-201ENST00000311487 EOMESO95936 686 aa19.72■□□□□ 0.75
HMGA1-201ENST00000311487 ATP2A2P16615 1042 aaKnown RBP19.72■□□□□ 0.75
HMGA1-201ENST00000311487 HS1BP3Q53T59 392 aa19.72■□□□□ 0.75
HMGA1-201ENST00000311487 TCERG1LQ5VWI1 586 aa19.72■□□□□ 0.75
HMGA1-201ENST00000311487 SNX27Q96L92 541 aa19.72■□□□□ 0.75
HMGA1-201ENST00000311487 CNOT6LQ96LI5 555 aaKnown RBP19.72■□□□□ 0.75
HMGA1-201ENST00000311487 PTPRSQ13332 1948 aa19.71■□□□□ 0.75
HMGA1-201ENST00000311487 TTC26A0AVF1 554 aa19.71■□□□□ 0.75
HMGA1-201ENST00000311487 EPB41P11171 864 aaKnown RBP19.71■□□□□ 0.75
HMGA1-201ENST00000311487 SKIP12755 728 aa19.71■□□□□ 0.75
HMGA1-201ENST00000311487 PBX3P40426 434 aa19.71■□□□□ 0.75
HMGA1-201ENST00000311487 TFAMQ00059 246 aaKnown RBP19.71■□□□□ 0.75
HMGA1-201ENST00000311487 PPP2R3AQ06190 1150 aa19.71■□□□□ 0.75
HMGA1-201ENST00000311487 NPAS4Q8IUM7 802 aa19.71■□□□□ 0.75
HMGA1-201ENST00000311487 ZC3H3Q8IXZ2 948 aaKnown RBP19.71■□□□□ 0.75
HMGA1-201ENST00000311487 ABI1Q8IZP0 508 aa19.71■□□□□ 0.75
HMGA1-201ENST00000311487 KIF12Q96FN5 646 aa19.71■□□□□ 0.75
HMGA1-201ENST00000311487 SZT2Q5T011 3432 aa19.71■□□□□ 0.75
HMGA1-201ENST00000311487 SMIM28A0A1B0GU29 152 aa19.7■□□□□ 0.74
HMGA1-201ENST00000311487 B4GALT3O60512 393 aa19.7■□□□□ 0.74
HMGA1-201ENST00000311487 TNNI1P19237 187 aa19.7■□□□□ 0.74
HMGA1-201ENST00000311487 IGFBP6P24592 240 aaPredicted RBP19.7■□□□□ 0.74
HMGA1-201ENST00000311487 NFIL3Q16649 462 aa19.7■□□□□ 0.74
HMGA1-201ENST00000311487 GLB1LQ6UWU2 654 aa19.7■□□□□ 0.74
HMGA1-201ENST00000311487 ALKAL1Q6UXT8 129 aa19.7■□□□□ 0.74
HMGA1-201ENST00000311487 FILIP1Q7Z7B0 1213 aa19.7■□□□□ 0.74
HMGA1-201ENST00000311487 ZNF280BQ86YH2 543 aa19.7■□□□□ 0.74
HMGA1-201ENST00000311487 BRSK2Q8IWQ3 736 aa19.7■□□□□ 0.74
HMGA1-201ENST00000311487 EFCAB13Q8IY85 973 aa19.7■□□□□ 0.74
HMGA1-201ENST00000311487 HACE1Q8IYU2 909 aa19.7■□□□□ 0.74
HMGA1-201ENST00000311487 OR5B17Q8NGF7 314 aa19.7■□□□□ 0.74
HMGA1-201ENST00000311487 MFSD14AQ96MC6 490 aa19.7■□□□□ 0.74
HMGA1-201ENST00000311487 CASD1Q96PB1 797 aa19.7■□□□□ 0.74
HMGA1-201ENST00000311487 RPS6KC1Q96S38 1066 aa19.7■□□□□ 0.74
HMGA1-201ENST00000311487 TUBGCP4Q9UGJ1 667 aa19.7■□□□□ 0.74
HMGA1-201ENST00000311487 LRRIQ3A6PVS8 624 aaPredicted RBP19.7■□□□□ 0.74
HMGA1-201ENST00000311487 KCNJ18B7U540 433 aa19.7■□□□□ 0.74
HMGA1-201ENST00000311487 DGKIO75912 1065 aa19.7■□□□□ 0.74
HMGA1-201ENST00000311487 VAMP7P51809 220 aa19.7■□□□□ 0.74
HMGA1-201ENST00000311487 KCNJ12Q14500 433 aa19.7■□□□□ 0.74
HMGA1-201ENST00000311487 PTPN21Q16825 1174 aa19.7■□□□□ 0.74
HMGA1-201ENST00000311487 ZNF516Q92618 1163 aa19.7■□□□□ 0.74
HMGA1-201ENST00000311487 BORCS6Q96GS4 357 aa19.7■□□□□ 0.74
HMGA1-201ENST00000311487 CEP63Q96MT8 703 aa19.7■□□□□ 0.74
HMGA1-201ENST00000311487 YME1L1Q96TA2 773 aa19.7■□□□□ 0.74
HMGA1-201ENST00000311487 BPIFA3Q9BQP9 254 aa19.7■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms