RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 ZDHHC14Q8IZN3 488 aa21.43■■□□□ 1.02
LIME1-201ENST00000309546 PLCD3Q8N3E9 789 aa21.43■■□□□ 1.02
LIME1-201ENST00000309546 ACSF2Q96CM8 615 aaPredicted RBP21.43■■□□□ 1.02
LIME1-201ENST00000309546 ASIC4Q96FT7 647 aa21.43■■□□□ 1.02
LIME1-201ENST00000309546 TCHPQ9BT92 498 aa21.43■■□□□ 1.02
LIME1-201ENST00000309546 TIPINQ9BVW5 301 aa21.43■■□□□ 1.02
LIME1-201ENST00000309546 CCDC94Q9BW85 323 aaPredicted RBP21.43■■□□□ 1.02
LIME1-201ENST00000309546 SMOC2Q9H3U7 446 aa21.43■■□□□ 1.02
LIME1-201ENST00000309546 C17orf75Q9HAS0 396 aa21.43■■□□□ 1.02
LIME1-201ENST00000309546 LIMD1Q9UGP4 676 aa21.43■■□□□ 1.02
LIME1-201ENST00000309546 RBM19Q9Y4C8 960 aaKnown RBP21.43■■□□□ 1.02
LIME1-201ENST00000309546 VPS37CA5D8V6 355 aaPredicted RBP21.42■■□□□ 1.02
LIME1-201ENST00000309546 BRD1O95696 1058 aa21.42■■□□□ 1.02
LIME1-201ENST00000309546 GRM5P41594 1212 aa21.42■■□□□ 1.02
LIME1-201ENST00000309546 CACNB1Q02641 598 aaPredicted RBP21.42■■□□□ 1.02
LIME1-201ENST00000309546 OTOP3Q7RTS5 596 aa21.42■■□□□ 1.02
LIME1-201ENST00000309546 SYT2Q8N9I0 419 aaPredicted RBP21.42■■□□□ 1.02
LIME1-201ENST00000309546 CMASQ8NFW8 434 aaPredicted RBP21.42■■□□□ 1.02
LIME1-201ENST00000309546 SMG7Q92540 1137 aaKnown RBP21.42■■□□□ 1.02
LIME1-201ENST00000309546 TTPALQ9BTX7 342 aa21.42■■□□□ 1.02
LIME1-201ENST00000309546 FNIP2Q9P278 1114 aa21.42■■□□□ 1.02
LIME1-201ENST00000309546 PLA2G4BP0C869 781 aa21.41■■□□□ 1.02
LIME1-201ENST00000309546 SLC12A3P55017 1021 aa21.41■■□□□ 1.02
LIME1-201ENST00000309546 ELAVL2Q12926 359 aaKnown RBP21.41■■□□□ 1.02
LIME1-201ENST00000309546 STRN3Q13033 797 aa21.41■■□□□ 1.02
LIME1-201ENST00000309546 PSMD5Q16401 504 aa21.41■■□□□ 1.02
LIME1-201ENST00000309546 TMEM119Q4V9L6 283 aa21.41■■□□□ 1.02
LIME1-201ENST00000309546 GPR65Q8IYL9 337 aa21.41■■□□□ 1.02
LIME1-201ENST00000309546 FBXL6Q8N531 539 aa21.41■■□□□ 1.02
LIME1-201ENST00000309546 PPP1R10Q96QC0 940 aaKnown RBP21.41■■□□□ 1.02
LIME1-201ENST00000309546 PIDD1Q9HB75 910 aa21.41■■□□□ 1.02
LIME1-201ENST00000309546 GOLGA2P5Q9HBQ8 144 aa21.41■■□□□ 1.02
LIME1-201ENST00000309546 TOPORSQ9NS56 1045 aaPredicted RBP21.41■■□□□ 1.02
LIME1-201ENST00000309546 ANKFY1Q9P2R3 1169 aa21.41■■□□□ 1.02
LIME1-201ENST00000309546 MUC6Q6W4X9 2439 aa21.41■■□□□ 1.02
LIME1-201ENST00000309546 CLUHO75153 1309 aa21.4■■□□□ 1.02
LIME1-201ENST00000309546 NPHP3-ACAD11A0A0J9YXS1 232 aa21.4■■□□□ 1.02
LIME1-201ENST00000309546 B3GAT3O94766 335 aa21.4■■□□□ 1.02
LIME1-201ENST00000309546 PLS3P13797 630 aa21.4■■□□□ 1.02
LIME1-201ENST00000309546 GBP2P32456 591 aaPredicted RBP21.4■■□□□ 1.02
LIME1-201ENST00000309546 CLCNKBP51801 687 aa21.4■■□□□ 1.02
LIME1-201ENST00000309546 SMTNP53814 917 aa21.4■■□□□ 1.02
LIME1-201ENST00000309546 BRAPQ7Z569 592 aa21.4■■□□□ 1.02
LIME1-201ENST00000309546 UBALD2Q8IYN6 164 aa21.4■■□□□ 1.02
LIME1-201ENST00000309546 KCTD17Q8N5Z5 321 aa21.4■■□□□ 1.02
LIME1-201ENST00000309546 RASSF8Q8NHQ8 419 aa21.4■■□□□ 1.02
LIME1-201ENST00000309546 HDAC7Q8WUI4 952 aa21.4■■□□□ 1.02
LIME1-201ENST00000309546 PIK3R5Q8WYR1 880 aa21.4■■□□□ 1.02
LIME1-201ENST00000309546 CALML4Q96GE6 196 aa21.4■■□□□ 1.02
LIME1-201ENST00000309546 AK8Q96MA6 479 aa21.4■■□□□ 1.02
LIME1-201ENST00000309546 PLEKHA4Q9H4M7 779 aa21.4■■□□□ 1.02
LIME1-201ENST00000309546 PTPRHQ9HD43 1115 aa21.4■■□□□ 1.02
LIME1-201ENST00000309546 DAXXQ9UER7 740 aaPredicted RBP21.4■■□□□ 1.02
LIME1-201ENST00000309546 SMIM28A0A1B0GU29 152 aa21.39■■□□□ 1.01
LIME1-201ENST00000309546 PDGFBP01127 241 aaPredicted RBP21.39■■□□□ 1.01
LIME1-201ENST00000309546 MCF2P10911 925 aa21.39■■□□□ 1.01
LIME1-201ENST00000309546 UBA7P41226 1012 aa21.39■■□□□ 1.01
LIME1-201ENST00000309546 DHX8Q14562 1220 aaKnown RBP21.39■■□□□ 1.01
LIME1-201ENST00000309546 MPZL3Q6UWV2 235 aa21.39■■□□□ 1.01
LIME1-201ENST00000309546 LNX1Q8TBB1 728 aaPredicted RBP21.39■■□□□ 1.01
LIME1-201ENST00000309546 SPIRE2Q8WWL2 714 aa21.39■■□□□ 1.01
LIME1-201ENST00000309546 KCNH6Q9H252 994 aa21.39■■□□□ 1.01
LIME1-201ENST00000309546 WDR6Q9NNW5 1121 aaKnown RBP21.39■■□□□ 1.01
LIME1-201ENST00000309546 PDCD11Q14690 1871 aaKnown RBP21.39■■□□□ 1.01
LIME1-201ENST00000309546 BMP15O95972 392 aa21.38■■□□□ 1.01
LIME1-201ENST00000309546 IGFBP6P24592 240 aaPredicted RBP21.38■■□□□ 1.01
LIME1-201ENST00000309546 MATR3P43243 847 aaKnown RBP eCLIP21.38■■□□□ 1.01
LIME1-201ENST00000309546 GRIN1Q05586 938 aa21.38■■□□□ 1.01
LIME1-201ENST00000309546 SF3A1Q15459 793 aaKnown RBP21.38■■□□□ 1.01
LIME1-201ENST00000309546 LILRA6Q6PI73 481 aa21.38■■□□□ 1.01
LIME1-201ENST00000309546 DCLRE1AQ6PJP8 1040 aa21.38■■□□□ 1.01
LIME1-201ENST00000309546 CYP26C1Q6V0L0 522 aa21.38■■□□□ 1.01
LIME1-201ENST00000309546 PDZRN4Q6ZMN7 1036 aaPredicted RBP21.38■■□□□ 1.01
LIME1-201ENST00000309546 GPBP1Q86WP2 473 aa21.38■■□□□ 1.01
LIME1-201ENST00000309546 TMEM161BQ8NDZ6 487 aa21.38■■□□□ 1.01
LIME1-201ENST00000309546 STAMQ92783 540 aa21.38■■□□□ 1.01
LIME1-201ENST00000309546 ZNF707Q96C28 371 aaPredicted RBP21.38■■□□□ 1.01
LIME1-201ENST00000309546 ZBTB45Q96K62 511 aaPredicted RBP21.38■■□□□ 1.01
LIME1-201ENST00000309546 SNX27Q96L92 541 aa21.38■■□□□ 1.01
LIME1-201ENST00000309546 UROC1Q96N76 676 aa21.38■■□□□ 1.01
LIME1-201ENST00000309546 ACAP3Q96P50 834 aa21.38■■□□□ 1.01
LIME1-201ENST00000309546 CLSTN3Q9BQT9 956 aa21.38■■□□□ 1.01
LIME1-201ENST00000309546 ZDHHC7Q9NXF8 308 aa21.38■■□□□ 1.01
LIME1-201ENST00000309546 KCND2Q9NZV8 630 aa21.38■■□□□ 1.01
LIME1-201ENST00000309546 KCNG1Q9UIX4 513 aa21.38■■□□□ 1.01
LIME1-201ENST00000309546 TMEM189-UBE2V1I3L0A0 370 aa21.37■■□□□ 1.01
LIME1-201ENST00000309546 I3L4J1 428 aa21.37■■□□□ 1.01
LIME1-201ENST00000309546 ABLIM1O14639 778 aa21.37■■□□□ 1.01
LIME1-201ENST00000309546 C1RP00736 705 aa21.37■■□□□ 1.01
LIME1-201ENST00000309546 MAPTP10636 758 aaKnown RBP21.37■■□□□ 1.01
LIME1-201ENST00000309546 PROZP22891 400 aa21.37■■□□□ 1.01
LIME1-201ENST00000309546 VCPP55072 806 aaKnown RBP21.37■■□□□ 1.01
LIME1-201ENST00000309546 SOX4Q06945 474 aaPredicted RBP21.37■■□□□ 1.01
LIME1-201ENST00000309546 CUL4AQ13619 759 aa21.37■■□□□ 1.01
LIME1-201ENST00000309546 NOLC1Q14978 699 aaKnown RBP eCLIP21.37■■□□□ 1.01
LIME1-201ENST00000309546 UPP1Q16831 310 aa21.37■■□□□ 1.01
LIME1-201ENST00000309546 SEZ6Q53EL9 994 aa21.37■■□□□ 1.01
LIME1-201ENST00000309546 IER5LQ5T953 404 aa21.37■■□□□ 1.01
LIME1-201ENST00000309546 LIN9Q5TKA1 542 aa21.37■■□□□ 1.01
LIME1-201ENST00000309546 PDXDC1Q6P996 788 aa21.37■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms