RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 USP17L10C9JJH3 530 aa18.31■□□□□ 0.52
SYNPO-201ENST00000307662 CCDC159P0C7I6 412 aa18.31■□□□□ 0.52
SYNPO-201ENST00000307662 UCHL3P15374 230 aa18.31■□□□□ 0.52
SYNPO-201ENST00000307662 CTCFP49711 727 aaPredicted RBP18.31■□□□□ 0.52
SYNPO-201ENST00000307662 EIF3EP60228 445 aaKnown RBP18.31■□□□□ 0.52
SYNPO-201ENST00000307662 IMPG1Q17R60 797 aa18.31■□□□□ 0.52
SYNPO-201ENST00000307662 DDX42Q86XP3 938 aaKnown RBP eCLIP18.31■□□□□ 0.52
SYNPO-201ENST00000307662 HPS3Q969F9 1004 aa18.31■□□□□ 0.52
SYNPO-201ENST00000307662 COA1Q9GZY4 146 aa18.31■□□□□ 0.52
SYNPO-201ENST00000307662 COG4Q9H9E3 785 aa18.31■□□□□ 0.52
SYNPO-201ENST00000307662 MAGEA13PA6NCF6 341 aa18.3■□□□□ 0.52
SYNPO-201ENST00000307662 F5H423 210 aaPredicted RBP18.3■□□□□ 0.52
SYNPO-201ENST00000307662 ITIH4Q14624 930 aa18.3■□□□□ 0.52
SYNPO-201ENST00000307662 KYNUQ16719 465 aa18.3■□□□□ 0.52
SYNPO-201ENST00000307662 ITPRIPL1Q6GPH6 555 aa18.3■□□□□ 0.52
SYNPO-201ENST00000307662 ELOA2Q8IYF1 753 aaPredicted RBP18.3■□□□□ 0.52
SYNPO-201ENST00000307662 ADNPQ9H2P0 1102 aa18.3■□□□□ 0.52
SYNPO-201ENST00000307662 ERCC6L2Q5T890 1561 aa18.3■□□□□ 0.52
SYNPO-201ENST00000307662 QRICH2Q9H0J4 1663 aa18.3■□□□□ 0.52
SYNPO-201ENST00000307662 GPC3P51654 580 aa18.3■□□□□ 0.52
SYNPO-201ENST00000307662 C1orf228Q6PIY5 440 aa18.3■□□□□ 0.52
SYNPO-201ENST00000307662 NSL1Q96IY1 281 aa18.3■□□□□ 0.52
SYNPO-201ENST00000307662 RMDN2Q96LZ7 410 aa18.3■□□□□ 0.52
SYNPO-201ENST00000307662 CHCHD3Q9NX63 227 aaKnown RBP18.3■□□□□ 0.52
SYNPO-201ENST00000307662 DONSONQ9NYP3 566 aa18.3■□□□□ 0.52
SYNPO-201ENST00000307662 APEX2Q9UBZ4 518 aa18.3■□□□□ 0.52
SYNPO-201ENST00000307662 SNX19Q92543 992 aa18.3■□□□□ 0.52
SYNPO-201ENST00000307662 MOV10L1Q9BXT6 1211 aaKnown RBP18.3■□□□□ 0.52
SYNPO-201ENST00000307662 WDR70Q9NW82 654 aa18.3■□□□□ 0.52
SYNPO-201ENST00000307662 NRKQ7Z2Y5 1582 aa18.3■□□□□ 0.52
SYNPO-201ENST00000307662 P4HBP07237 508 aaKnown RBP18.3■□□□□ 0.52
SYNPO-201ENST00000307662 HADHAP40939 763 aa18.3■□□□□ 0.52
SYNPO-201ENST00000307662 CNPY4Q8N129 248 aa18.3■□□□□ 0.52
SYNPO-201ENST00000307662 TEKT4Q8WW24 435 aa18.3■□□□□ 0.52
SYNPO-201ENST00000307662 CMTM5Q96DZ9 223 aa18.3■□□□□ 0.52
SYNPO-201ENST00000307662 ADAM33Q9BZ11 813 aa18.3■□□□□ 0.52
SYNPO-201ENST00000307662 ABCF3Q9NUQ8 709 aa18.3■□□□□ 0.52
SYNPO-201ENST00000307662 ZFATQ9P243 1243 aa18.3■□□□□ 0.52
SYNPO-201ENST00000307662 ABCA6Q8N139 1617 aa18.3■□□□□ 0.52
SYNPO-201ENST00000307662 TSPOAP1O95153 1857 aa18.29■□□□□ 0.52
SYNPO-201ENST00000307662 C16orf96A6NNT2 1141 aa18.29■□□□□ 0.52
SYNPO-201ENST00000307662 RPS6KA4O75676 772 aa18.29■□□□□ 0.52
SYNPO-201ENST00000307662 IFNA8P32881 189 aa18.29■□□□□ 0.52
SYNPO-201ENST00000307662 TMED10P49755 219 aaKnown RBP18.29■□□□□ 0.52
SYNPO-201ENST00000307662 ADCK1Q86TW2 530 aa18.29■□□□□ 0.52
SYNPO-201ENST00000307662 F8W8V4 182 aa18.29■□□□□ 0.52
SYNPO-201ENST00000307662 NQO1P15559 274 aaKnown RBP18.29■□□□□ 0.52
SYNPO-201ENST00000307662 CDH6P55285 790 aa18.29■□□□□ 0.52
SYNPO-201ENST00000307662 PRAMEP78395 509 aa18.29■□□□□ 0.52
SYNPO-201ENST00000307662 BARGINQ6ZT62 677 aa18.29■□□□□ 0.52
SYNPO-201ENST00000307662 TRAPPC11Q7Z392 1133 aa18.29■□□□□ 0.52
SYNPO-201ENST00000307662 COL23A1Q86Y22 540 aaPredicted RBP18.29■□□□□ 0.52
SYNPO-201ENST00000307662 TMCO5AQ8N6Q1 288 aa18.29■□□□□ 0.52
SYNPO-201ENST00000307662 CEP95Q96GE4 821 aa18.29■□□□□ 0.52
SYNPO-201ENST00000307662 KRT8P05787 483 aa18.29■□□□□ 0.52
SYNPO-201ENST00000307662 LRRC34Q8IZ02 419 aa18.29■□□□□ 0.52
SYNPO-201ENST00000307662 RNF217Q8TC41 542 aa18.29■□□□□ 0.52
SYNPO-201ENST00000307662 ORC4O43929 436 aa18.29■□□□□ 0.52
SYNPO-201ENST00000307662 PSMD7P51665 324 aa18.29■□□□□ 0.52
SYNPO-201ENST00000307662 USP11P51784 963 aa18.29■□□□□ 0.52
SYNPO-201ENST00000307662 TNFAIP2Q03169 654 aa18.29■□□□□ 0.52
SYNPO-201ENST00000307662 MTHFD1LQ6UB35 978 aa18.29■□□□□ 0.52
SYNPO-201ENST00000307662 DDIASQ8IXT1 998 aa18.29■□□□□ 0.52
SYNPO-201ENST00000307662 MDM1Q8TC05 714 aa18.29■□□□□ 0.52
SYNPO-201ENST00000307662 PPP1R16BQ96T49 567 aa18.29■□□□□ 0.52
SYNPO-201ENST00000307662 MTRQ99707 1265 aa18.29■□□□□ 0.52
SYNPO-201ENST00000307662 EIF2AK1Q9BQI3 630 aaKnown RBP18.29■□□□□ 0.52
SYNPO-201ENST00000307662 CELF4Q9BZC1 486 aaKnown RBP18.29■□□□□ 0.52
SYNPO-201ENST00000307662 MINPP1Q9UNW1 487 aa18.29■□□□□ 0.52
SYNPO-201ENST00000307662 APOL1O14791 398 aa18.28■□□□□ 0.52
SYNPO-201ENST00000307662 ADCY3O60266 1144 aa18.28■□□□□ 0.52
SYNPO-201ENST00000307662 GPD1LQ8N335 351 aa18.28■□□□□ 0.52
SYNPO-201ENST00000307662 ENGASEQ8NFI3 743 aa18.28■□□□□ 0.52
SYNPO-201ENST00000307662 HACD3Q9P035 362 aa18.28■□□□□ 0.52
SYNPO-201ENST00000307662 SCTRP47872 440 aa18.28■□□□□ 0.52
SYNPO-201ENST00000307662 PMS1P54277 932 aaKnown RBP18.28■□□□□ 0.52
SYNPO-201ENST00000307662 KRT76Q01546 638 aa18.28■□□□□ 0.52
SYNPO-201ENST00000307662 MAPK6Q16659 721 aa18.28■□□□□ 0.52
SYNPO-201ENST00000307662 LRRC8BQ6P9F7 803 aa18.28■□□□□ 0.52
SYNPO-201ENST00000307662 SULF1Q8IWU6 871 aa18.28■□□□□ 0.52
SYNPO-201ENST00000307662 SRBD1Q8N5C6 995 aaKnown RBP18.28■□□□□ 0.52
SYNPO-201ENST00000307662 QTRT2Q9H974 415 aaKnown RBP18.28■□□□□ 0.52
SYNPO-201ENST00000307662 MARCOQ9UEW3 520 aaPredicted RBP18.28■□□□□ 0.52
SYNPO-201ENST00000307662 L1RE1Q9UN81 338 aa18.28■□□□□ 0.52
SYNPO-201ENST00000307662 LRRIQ3A6PVS8 624 aaPredicted RBP18.28■□□□□ 0.52
SYNPO-201ENST00000307662 AKAP10O43572 662 aa18.28■□□□□ 0.52
SYNPO-201ENST00000307662 PRDX5P30044 214 aa18.28■□□□□ 0.52
SYNPO-201ENST00000307662 GIMAP8Q8ND71 665 aaPredicted RBP18.28■□□□□ 0.52
SYNPO-201ENST00000307662 PARD3BQ8TEW8 1205 aa18.28■□□□□ 0.52
SYNPO-201ENST00000307662 ANKS1AQ92625 1134 aa18.28■□□□□ 0.52
SYNPO-201ENST00000307662 KIF9Q9HAQ2 790 aa18.28■□□□□ 0.52
SYNPO-201ENST00000307662 ZHX2Q9Y6X8 837 aa18.28■□□□□ 0.52
SYNPO-201ENST00000307662 UTYO14607 1347 aa18.28■□□□□ 0.52
SYNPO-201ENST00000307662 FAM205CA6NFA0 338 aa18.28■□□□□ 0.52
SYNPO-201ENST00000307662 EYA4O95677 639 aa18.28■□□□□ 0.52
SYNPO-201ENST00000307662 QARSP47897 775 aaKnown RBP18.28■□□□□ 0.52
SYNPO-201ENST00000307662 FOXO4P98177 505 aa18.28■□□□□ 0.52
SYNPO-201ENST00000307662 KCNA1Q09470 495 aa18.28■□□□□ 0.52
SYNPO-201ENST00000307662 SLC29A2Q14542 456 aa18.28■□□□□ 0.52
SYNPO-201ENST00000307662 LVRNQ6Q4G3 990 aa18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms