RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 WDR46O15213 610 aaKnown RBP4.24□□□□□ -1.73
USH2A-201ENST00000307340 SEMA3DO95025 777 aa4.24□□□□□ -1.73
USH2A-201ENST00000307340 IFNA14P01570 189 aa4.24□□□□□ -1.73
USH2A-201ENST00000307340 CCT8P50990 548 aa4.24□□□□□ -1.73
USH2A-201ENST00000307340 SLC18A1P54219 525 aa4.24□□□□□ -1.73
USH2A-201ENST00000307340 OLR1P78380 273 aa4.24□□□□□ -1.73
USH2A-201ENST00000307340 SCRN1Q12765 414 aa4.24□□□□□ -1.73
USH2A-201ENST00000307340 CNGA2Q16280 664 aa4.24□□□□□ -1.73
USH2A-201ENST00000307340 DHX30Q7L2E3 1194 aaKnown RBP eCLIP4.24□□□□□ -1.73
USH2A-201ENST00000307340 SMCR8Q8TEV9 937 aaPredicted RBP4.24□□□□□ -1.73
USH2A-201ENST00000307340 PPWD1Q96BP3 646 aaKnown RBP4.24□□□□□ -1.73
USH2A-201ENST00000307340 SLC24A2Q9UI40 661 aa4.24□□□□□ -1.73
USH2A-201ENST00000307340 VGLL3A8MV65 326 aa4.24□□□□□ -1.73
USH2A-201ENST00000307340 RASA4BC9J798 803 aa4.24□□□□□ -1.73
USH2A-201ENST00000307340 ATXN3P54252 364 aaPredicted RBP4.24□□□□□ -1.73
USH2A-201ENST00000307340 BOLA3Q53S33 107 aa4.24□□□□□ -1.73
USH2A-201ENST00000307340 RPF1Q9H9Y2 349 aaKnown RBP4.24□□□□□ -1.73
USH2A-201ENST00000307340 TMEM63CQ9P1W3 806 aa4.24□□□□□ -1.73
USH2A-201ENST00000307340 SLC13A4Q9UKG4 626 aa4.24□□□□□ -1.73
USH2A-201ENST00000307340 USP17L3A6NCW0 530 aa4.24□□□□□ -1.73
USH2A-201ENST00000307340 USP17L4A6NCW7 530 aa4.24□□□□□ -1.73
USH2A-201ENST00000307340 ARHGEF9O43307 516 aa4.24□□□□□ -1.73
USH2A-201ENST00000307340 TBC1D12O60347 775 aa4.24□□□□□ -1.73
USH2A-201ENST00000307340 TAB1Q15750 504 aa4.24□□□□□ -1.73
USH2A-201ENST00000307340 USP17L1Q7RTZ2 530 aa4.24□□□□□ -1.73
USH2A-201ENST00000307340 TBC1D23Q9NUY8 699 aa4.24□□□□□ -1.73
USH2A-201ENST00000307340 A0A1W2PQ67 120 aa4.24□□□□□ -1.73
USH2A-201ENST00000307340 ARL1P40616 181 aaPredicted RBP4.24□□□□□ -1.73
USH2A-201ENST00000307340 PEX5P50542 639 aa4.24□□□□□ -1.73
USH2A-201ENST00000307340 ITGA1P56199 1179 aa4.24□□□□□ -1.73
USH2A-201ENST00000307340 CRY1Q16526 586 aa4.24□□□□□ -1.73
USH2A-201ENST00000307340 MDH1BQ5I0G3 518 aa4.24□□□□□ -1.73
USH2A-201ENST00000307340 AGAP9Q5VTM2 703 aa4.24□□□□□ -1.73
USH2A-201ENST00000307340 HORMAD1Q86X24 394 aa4.24□□□□□ -1.73
USH2A-201ENST00000307340 TRMOQ9BU70 441 aa4.24□□□□□ -1.73
USH2A-201ENST00000307340 PAK5Q9P286 719 aa4.24□□□□□ -1.73
USH2A-201ENST00000307340 APEX2Q9UBZ4 518 aa4.24□□□□□ -1.73
USH2A-201ENST00000307340 FHOD1Q9Y613 1164 aa4.24□□□□□ -1.73
USH2A-201ENST00000307340 MYO16Q9Y6X6 1858 aa4.24□□□□□ -1.73
USH2A-201ENST00000307340 ZC3H6P61129 1189 aaKnown RBP4.23□□□□□ -1.73
USH2A-201ENST00000307340 DMPKQ09013 629 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 KCTD2Q14681 263 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 PSTKQ8IV42 348 aaKnown RBP4.23□□□□□ -1.73
USH2A-201ENST00000307340 TIMMDC1Q9NPL8 285 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 HOXA2O43364 376 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 CASC4Q6P4E1 433 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 C16orf71Q8IYS4 520 aaPredicted RBP4.23□□□□□ -1.73
USH2A-201ENST00000307340 STKLD1Q8NE28 680 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 PRPF18Q99633 342 aaKnown RBP4.23□□□□□ -1.73
USH2A-201ENST00000307340 AIPL1Q9NZN9 384 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 PSMC3IPQ9P2W1 217 aaPredicted RBP4.23□□□□□ -1.73
USH2A-201ENST00000307340 NOD1Q9Y239 953 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 SUPT3HO75486 399 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 FAM200BP0CF97 657 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 RBM10P98175 930 aaKnown RBP4.23□□□□□ -1.73
USH2A-201ENST00000307340 HHIPL2Q6UWX4 724 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 ABI1Q8IZP0 508 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 CRAMP1Q96RY5 1269 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 MLXIPQ9HAP2 919 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 CDV3Q9UKY7 258 aaKnown RBP4.23□□□□□ -1.73
USH2A-201ENST00000307340 PCDHA13Q9Y5I0 950 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 KBTBD13C9JR72 458 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 MAPK1P28482 360 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 GRAPQ13588 217 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 THOC5Q13769 683 aaKnown RBP4.23□□□□□ -1.73
USH2A-201ENST00000307340 STRIP1Q5VSL9 837 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 ZNF544Q6NX49 715 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 RSBN1LQ6PCB5 846 aaPredicted RBP4.23□□□□□ -1.73
USH2A-201ENST00000307340 ZC3H18Q86VM9 953 aaKnown RBP4.23□□□□□ -1.73
USH2A-201ENST00000307340 GRAPLQ8TC17 118 aaPredicted RBP4.23□□□□□ -1.73
USH2A-201ENST00000307340 PAGE5Q96GU1 130 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 UBE2OQ9C0C9 1292 aaKnown RBP4.23□□□□□ -1.73
USH2A-201ENST00000307340 GANQ9H2C0 597 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 EMILIN3Q9NT22 766 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 RGPD5Q99666 1765 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 BMP3P12645 472 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 GSPT1P15170 499 aaKnown RBP4.23□□□□□ -1.73
USH2A-201ENST00000307340 INPP5AQ14642 412 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 TTLL4Q14679 1199 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 CENPPQ6IPU0 288 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 ZNF746Q6NUN9 644 aaPredicted RBP4.23□□□□□ -1.73
USH2A-201ENST00000307340 NEK5Q6P3R8 708 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 KYAT3Q6YP21 454 aaKnown RBP4.23□□□□□ -1.73
USH2A-201ENST00000307340 PNPT1Q8TCS8 783 aaKnown RBP4.23□□□□□ -1.73
USH2A-201ENST00000307340 CPLX3Q8WVH0 158 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 SMURF2Q9HAU4 748 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 FANCLQ9NW38 375 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 BFARQ9NZS9 450 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 FKBP9O95302 570 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 JAK1P23458 1154 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 IRF5Q13568 498 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 TATDN1Q6P1N9 297 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 PRR23BQ6ZRT6 265 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 PABPC3Q9H361 631 aaKnown RBP4.23□□□□□ -1.73
USH2A-201ENST00000307340 CD209Q9NNX6 404 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 IRAK4Q9NWZ3 460 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 SGK1O00141 431 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 MYO1DO94832 1006 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 GRM3Q14832 879 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 E4F1Q66K89 784 aaPredicted RBP4.23□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms