RNA–Protein interactions for RNA: ENST00000304494.9

CDKN2A-201, Transcript of cyclin dependent kinase inhibitor 2A, humanhuman

TSL 1 (best) BASIC

Gene CDKN2A, Length 1,218 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDKN2A-201ENST00000304494 HAUS6Q7Z4H7 955 aa28.96■■■□□ 2.23
CDKN2A-201ENST00000304494 CEP120Q8N960 986 aa28.96■■■□□ 2.23
CDKN2A-201ENST00000304494 CLIC6Q96NY7 704 aa28.96■■■□□ 2.23
CDKN2A-201ENST00000304494 NECTIN4Q96NY8 510 aa28.96■■■□□ 2.23
CDKN2A-201ENST00000304494 CXCL16Q9H2A7 254 aa28.96■■■□□ 2.23
CDKN2A-201ENST00000304494 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP28.96■■■□□ 2.23
CDKN2A-201ENST00000304494 ANKFY1Q9P2R3 1169 aa28.96■■■□□ 2.23
CDKN2A-201ENST00000304494 CACNG4Q9UBN1 327 aa28.96■■■□□ 2.23
CDKN2A-201ENST00000304494 LOC730098B7Z3J9 87 aa28.95■■■□□ 2.22
CDKN2A-201ENST00000304494 ABCD1P33897 745 aa28.95■■■□□ 2.22
CDKN2A-201ENST00000304494 NASPP49321 788 aaPredicted RBP28.95■■■□□ 2.22
CDKN2A-201ENST00000304494 OSTNP61366 133 aa28.95■■■□□ 2.22
CDKN2A-201ENST00000304494 CREMQ03060 361 aa28.95■■■□□ 2.22
CDKN2A-201ENST00000304494 NOLC1Q14978 699 aaKnown RBP eCLIP28.95■■■□□ 2.22
CDKN2A-201ENST00000304494 FBXL18Q96ME1 805 aa28.95■■■□□ 2.22
CDKN2A-201ENST00000304494 UROC1Q96N76 676 aa28.95■■■□□ 2.22
CDKN2A-201ENST00000304494 ZNF396Q96N95 335 aaPredicted RBP28.95■■■□□ 2.22
CDKN2A-201ENST00000304494 ACAP3Q96P50 834 aa28.95■■■□□ 2.22
CDKN2A-201ENST00000304494 PPP1R10Q96QC0 940 aaKnown RBP28.95■■■□□ 2.22
CDKN2A-201ENST00000304494 RXFP1Q9HBX9 757 aa28.95■■■□□ 2.22
CDKN2A-201ENST00000304494 DPP7Q9UHL4 492 aa28.95■■■□□ 2.22
CDKN2A-201ENST00000304494 MYH11P35749 1972 aa28.95■■■□□ 2.22
CDKN2A-201ENST00000304494 SPDYE4A6NLX3 237 aa28.94■■■□□ 2.22
CDKN2A-201ENST00000304494 TEX28O15482 410 aa28.94■■■□□ 2.22
CDKN2A-201ENST00000304494 CLDN3O15551 220 aa28.94■■■□□ 2.22
CDKN2A-201ENST00000304494 KIF4AO95239 1232 aa28.94■■■□□ 2.22
CDKN2A-201ENST00000304494 ELAVL2Q12926 359 aaKnown RBP28.94■■■□□ 2.22
CDKN2A-201ENST00000304494 XKR4Q5GH76 650 aa28.94■■■□□ 2.22
CDKN2A-201ENST00000304494 GLRA4Q5JXX5 417 aa28.94■■■□□ 2.22
CDKN2A-201ENST00000304494 RRAGBQ5VZM2 374 aa28.94■■■□□ 2.22
CDKN2A-201ENST00000304494 ELMSAN1Q6PJG2 1045 aa28.94■■■□□ 2.22
CDKN2A-201ENST00000304494 ALKAL1Q6UXT8 129 aa28.94■■■□□ 2.22
CDKN2A-201ENST00000304494 BICD1Q96G01 975 aa28.94■■■□□ 2.22
CDKN2A-201ENST00000304494 RIPOR3Q96MK2 946 aa28.94■■■□□ 2.22
CDKN2A-201ENST00000304494 ZHX3Q9H4I2 956 aa28.94■■■□□ 2.22
CDKN2A-201ENST00000304494 SFXN1Q9H9B4 322 aa28.94■■■□□ 2.22
CDKN2A-201ENST00000304494 SLC38A7Q9NVC3 462 aa28.94■■■□□ 2.22
CDKN2A-201ENST00000304494 SMIM28A0A1B0GU29 152 aa28.93■■■□□ 2.22
CDKN2A-201ENST00000304494 K7ENM7 598 aa28.93■■■□□ 2.22
CDKN2A-201ENST00000304494 DCXO43602 365 aa28.93■■■□□ 2.22
CDKN2A-201ENST00000304494 TRAK2O60296 914 aa28.93■■■□□ 2.22
CDKN2A-201ENST00000304494 HARSP12081 509 aaKnown RBP28.93■■■□□ 2.22
CDKN2A-201ENST00000304494 MTHFRP42898 656 aa28.93■■■□□ 2.22
CDKN2A-201ENST00000304494 STK38Q15208 465 aa28.93■■■□□ 2.22
CDKN2A-201ENST00000304494 RARS2Q5T160 578 aaKnown RBP28.93■■■□□ 2.22
CDKN2A-201ENST00000304494 HASPINQ8TF76 798 aa28.93■■■□□ 2.22
CDKN2A-201ENST00000304494 RPGRIP1Q96KN7 1286 aa28.93■■■□□ 2.22
CDKN2A-201ENST00000304494 MATR3P43243 847 aaKnown RBP eCLIP28.92■■■□□ 2.22
CDKN2A-201ENST00000304494 MCL1Q07820 350 aa28.92■■■□□ 2.22
CDKN2A-201ENST00000304494 CCDC73Q6ZRK6 1079 aa28.92■■■□□ 2.22
CDKN2A-201ENST00000304494 RNF135Q8IUD6 432 aa28.92■■■□□ 2.22
CDKN2A-201ENST00000304494 LINC00301Q8NCQ3 95 aa28.92■■■□□ 2.22
CDKN2A-201ENST00000304494 RIN2Q8WYP3 895 aaPredicted RBP28.92■■■□□ 2.22
CDKN2A-201ENST00000304494 ZBTB45Q96K62 511 aaPredicted RBP28.92■■■□□ 2.22
CDKN2A-201ENST00000304494 B3GALT6Q96L58 329 aa28.92■■■□□ 2.22
CDKN2A-201ENST00000304494 SNX27Q96L92 541 aa28.92■■■□□ 2.22
CDKN2A-201ENST00000304494 FNIP2Q9P278 1114 aa28.92■■■□□ 2.22
CDKN2A-201ENST00000304494 TBX20Q9UMR3 447 aa28.92■■■□□ 2.22
CDKN2A-201ENST00000304494 TMEM189-UBE2V1I3L0A0 370 aa28.91■■■□□ 2.22
CDKN2A-201ENST00000304494 GLUD1P00367 558 aa28.91■■■□□ 2.22
CDKN2A-201ENST00000304494 C1RP00736 705 aa28.91■■■□□ 2.22
CDKN2A-201ENST00000304494 LIG4P49917 911 aa28.91■■■□□ 2.22
CDKN2A-201ENST00000304494 ATAT1Q5SQI0 421 aa28.91■■■□□ 2.22
CDKN2A-201ENST00000304494 DCLRE1AQ6PJP8 1040 aa28.91■■■□□ 2.22
CDKN2A-201ENST00000304494 C12orf76Q8N812 135 aaPredicted RBP28.91■■■□□ 2.22
CDKN2A-201ENST00000304494 CNTN3Q9P232 1028 aa28.91■■■□□ 2.22
CDKN2A-201ENST00000304494 HNRNPDLO14979 420 aaKnown RBP28.9■■■□□ 2.22
CDKN2A-201ENST00000304494 ZSCAN22P10073 491 aaPredicted RBP28.9■■■□□ 2.22
CDKN2A-201ENST00000304494 KCNE1P15382 129 aa28.9■■■□□ 2.22
CDKN2A-201ENST00000304494 KYAT1Q16773 422 aa28.9■■■□□ 2.22
CDKN2A-201ENST00000304494 TMEM31Q5JXX7 168 aa28.9■■■□□ 2.22
CDKN2A-201ENST00000304494 FAM171A1Q5VUB5 890 aa28.9■■■□□ 2.22
CDKN2A-201ENST00000304494 SV2BQ7L1I2 683 aa28.9■■■□□ 2.22
CDKN2A-201ENST00000304494 TTPALQ9BTX7 342 aa28.9■■■□□ 2.22
CDKN2A-201ENST00000304494 NR2E1Q9Y466 385 aa28.9■■■□□ 2.22
CDKN2A-201ENST00000304494 SPTLC2O15270 562 aa28.89■■■□□ 2.22
CDKN2A-201ENST00000304494 PPP6R2O75170 966 aa28.89■■■□□ 2.22
CDKN2A-201ENST00000304494 B3GAT3O94766 335 aa28.89■■■□□ 2.22
CDKN2A-201ENST00000304494 PIGRP01833 764 aa28.89■■■□□ 2.22
CDKN2A-201ENST00000304494 STAT6P42226 847 aa28.89■■■□□ 2.22
CDKN2A-201ENST00000304494 CLCNKBP51801 687 aa28.89■■■□□ 2.22
CDKN2A-201ENST00000304494 UPP1Q16831 310 aa28.89■■■□□ 2.22
CDKN2A-201ENST00000304494 HERC4Q5GLZ8 1057 aaPredicted RBP28.89■■■□□ 2.22
CDKN2A-201ENST00000304494 PDXDC1Q6P996 788 aa28.89■■■□□ 2.22
CDKN2A-201ENST00000304494 DDX27Q96GQ7 796 aaKnown RBP28.89■■■□□ 2.22
CDKN2A-201ENST00000304494 MAN1C1Q9NR34 630 aa28.89■■■□□ 2.22
CDKN2A-201ENST00000304494 TRAPPC3O43617 180 aa28.88■■■□□ 2.21
CDKN2A-201ENST00000304494 GPR37L1O60883 481 aa28.88■■■□□ 2.21
CDKN2A-201ENST00000304494 YEATS4O95619 227 aa28.88■■■□□ 2.21
CDKN2A-201ENST00000304494 RTP2Q5QGT7 225 aa28.88■■■□□ 2.21
CDKN2A-201ENST00000304494 TMC5Q6UXY8 1006 aa28.88■■■□□ 2.21
CDKN2A-201ENST00000304494 DYMQ7RTS9 669 aa28.88■■■□□ 2.21
CDKN2A-201ENST00000304494 CEP57Q86XR8 500 aa28.88■■■□□ 2.21
CDKN2A-201ENST00000304494 HDAC7Q8WUI4 952 aa28.88■■■□□ 2.21
CDKN2A-201ENST00000304494 DDX12PQ92771 950 aa28.88■■■□□ 2.21
CDKN2A-201ENST00000304494 POMKQ9H5K3 350 aa28.88■■■□□ 2.21
CDKN2A-201ENST00000304494 TFIP11Q9UBB9 837 aaKnown RBP28.88■■■□□ 2.21
CDKN2A-201ENST00000304494 GTF2BQ00403 316 aa28.87■■■□□ 2.21
CDKN2A-201ENST00000304494 FOXD4L5Q5VV16 416 aaPredicted RBP28.87■■■□□ 2.21
CDKN2A-201ENST00000304494 PDZRN4Q6ZMN7 1036 aaPredicted RBP28.87■■■□□ 2.21
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms