RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 CAPN11Q9UMQ6 739 aa8.25□□□□□ -1.09
SCN9A-201ENST00000303354 PLXNC1O60486 1568 aa8.25□□□□□ -1.09
SCN9A-201ENST00000303354 TEX33O43247 280 aa8.25□□□□□ -1.09
SCN9A-201ENST00000303354 VCAM1P19320 739 aa8.25□□□□□ -1.09
SCN9A-201ENST00000303354 SOAT1P35610 550 aa8.25□□□□□ -1.09
SCN9A-201ENST00000303354 CASP4P49662 377 aa8.25□□□□□ -1.09
SCN9A-201ENST00000303354 GTF2A2P52657 109 aa8.25□□□□□ -1.09
SCN9A-201ENST00000303354 PKN3Q6P5Z2 889 aa8.25□□□□□ -1.09
SCN9A-201ENST00000303354 PLEKHH3Q7Z736 793 aa8.25□□□□□ -1.09
SCN9A-201ENST00000303354 SPACA7Q96KW9 195 aa8.25□□□□□ -1.09
SCN9A-201ENST00000303354 CCDC90BQ9GZT6 254 aa8.25□□□□□ -1.09
SCN9A-201ENST00000303354 V9GYQ6 96 aa8.25□□□□□ -1.09
SCN9A-201ENST00000303354 IQSEC2Q5JU85 1478 aa8.25□□□□□ -1.09
SCN9A-201ENST00000303354 EGFRP00533 1210 aa8.25□□□□□ -1.09
SCN9A-201ENST00000303354 CA4P22748 312 aa8.25□□□□□ -1.09
SCN9A-201ENST00000303354 SFNP31947 248 aa8.25□□□□□ -1.09
SCN9A-201ENST00000303354 RAD51Q06609 339 aa8.25□□□□□ -1.09
SCN9A-201ENST00000303354 PALB2Q86YC2 1186 aa8.25□□□□□ -1.09
SCN9A-201ENST00000303354 HSPBP1Q9NZL4 362 aa8.25□□□□□ -1.09
SCN9A-201ENST00000303354 ORC6Q9Y5N6 252 aa8.25□□□□□ -1.09
SCN9A-201ENST00000303354 TMEM247A6NEH6 219 aa8.25□□□□□ -1.09
SCN9A-201ENST00000303354 COPEO14579 308 aa8.25□□□□□ -1.09
SCN9A-201ENST00000303354 MEFVO15553 781 aaPredicted RBP8.25□□□□□ -1.09
SCN9A-201ENST00000303354 ERVK-7P63135 1459 aa8.25□□□□□ -1.09
SCN9A-201ENST00000303354 UBE3AQ05086 875 aa8.25□□□□□ -1.09
SCN9A-201ENST00000303354 C16orf59Q7L2K0 433 aa8.25□□□□□ -1.09
SCN9A-201ENST00000303354 ZBED8Q8IZ13 594 aa8.25□□□□□ -1.09
SCN9A-201ENST00000303354 IPMKQ8NFU5 416 aa8.25□□□□□ -1.09
SCN9A-201ENST00000303354 SMPD4Q9NXE4 827 aa8.25□□□□□ -1.09
SCN9A-201ENST00000303354 TUBB4AP04350 444 aa8.25□□□□□ -1.09
SCN9A-201ENST00000303354 RGS2P41220 211 aa8.25□□□□□ -1.09
SCN9A-201ENST00000303354 PDAP1Q13442 181 aaKnown RBP8.25□□□□□ -1.09
SCN9A-201ENST00000303354 FAXCQ5TGI0 409 aa8.25□□□□□ -1.09
SCN9A-201ENST00000303354 TMEM169Q96HH4 297 aa8.25□□□□□ -1.09
SCN9A-201ENST00000303354 TRAPPC3O43617 180 aa8.25□□□□□ -1.09
SCN9A-201ENST00000303354 B3GAT3O94766 335 aa8.25□□□□□ -1.09
SCN9A-201ENST00000303354 CSF1RP07333 972 aa8.25□□□□□ -1.09
SCN9A-201ENST00000303354 ADRA2BP18089 450 aa8.25□□□□□ -1.09
SCN9A-201ENST00000303354 ITGB6P18564 788 aa8.25□□□□□ -1.09
SCN9A-201ENST00000303354 COPS2P61201 443 aa8.25□□□□□ -1.09
SCN9A-201ENST00000303354 TSNAXIP1Q2TAA8 658 aa8.25□□□□□ -1.09
SCN9A-201ENST00000303354 RGL4Q8IZJ4 473 aa8.25□□□□□ -1.09
SCN9A-201ENST00000303354 DHX38Q92620 1227 aaKnown RBP8.25□□□□□ -1.09
SCN9A-201ENST00000303354 REEP2Q9BRK0 252 aa8.25□□□□□ -1.09
SCN9A-201ENST00000303354 PDGFDQ9GZP0 370 aaPredicted RBP8.25□□□□□ -1.09
SCN9A-201ENST00000303354 ZMYND12Q9H0C1 365 aa8.25□□□□□ -1.09
SCN9A-201ENST00000303354 DIAPH2O60879 1101 aa8.24□□□□□ -1.09
SCN9A-201ENST00000303354 PCDH8O95206 1070 aa8.24□□□□□ -1.09
SCN9A-201ENST00000303354 NFIAQ12857 509 aa8.24□□□□□ -1.09
SCN9A-201ENST00000303354 DNAAF5Q86Y56 855 aa8.24□□□□□ -1.09
SCN9A-201ENST00000303354 ELAC2Q9BQ52 826 aaKnown RBP8.24□□□□□ -1.09
SCN9A-201ENST00000303354 MOXD2PA6NHM9 499 aa8.24□□□□□ -1.09
SCN9A-201ENST00000303354 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.24□□□□□ -1.09
SCN9A-201ENST00000303354 TRPV6Q9H1D0 765 aa8.24□□□□□ -1.09
SCN9A-201ENST00000303354 OSGEPL1Q9H4B0 414 aa8.24□□□□□ -1.09
SCN9A-201ENST00000303354 VCPKMTQ9H867 229 aa8.24□□□□□ -1.09
SCN9A-201ENST00000303354 FGFR1P11362 822 aa8.24□□□□□ -1.09
SCN9A-201ENST00000303354 ARHGAP15Q53QZ3 475 aa8.24□□□□□ -1.09
SCN9A-201ENST00000303354 NFRKBQ6P4R8 1299 aa8.24□□□□□ -1.09
SCN9A-201ENST00000303354 TMEM117Q9H0C3 514 aa8.24□□□□□ -1.09
SCN9A-201ENST00000303354 NUDT5Q9UKK9 219 aa8.24□□□□□ -1.09
SCN9A-201ENST00000303354 STAP1Q9ULZ2 295 aa8.24□□□□□ -1.09
SCN9A-201ENST00000303354 L3MBTL1Q9Y468 752 aa8.24□□□□□ -1.09
SCN9A-201ENST00000303354 GCC2Q8IWJ2 1684 aa8.24□□□□□ -1.09
SCN9A-201ENST00000303354 ATP6V1E1P36543 226 aa8.24□□□□□ -1.09
SCN9A-201ENST00000303354 EIF3EP60228 445 aaKnown RBP8.24□□□□□ -1.09
SCN9A-201ENST00000303354 EPHA7Q15375 998 aa8.24□□□□□ -1.09
SCN9A-201ENST00000303354 ZNF614Q8N883 585 aa8.24□□□□□ -1.09
SCN9A-201ENST00000303354 OSMRQ99650 979 aa8.24□□□□□ -1.09
SCN9A-201ENST00000303354 HAUS8Q9BT25 410 aa8.24□□□□□ -1.09
SCN9A-201ENST00000303354 HERC5Q9UII4 1024 aaKnown RBP8.24□□□□□ -1.09
SCN9A-201ENST00000303354 TFR2Q9UP52 801 aa8.24□□□□□ -1.09
SCN9A-201ENST00000303354 APOL1O14791 398 aa8.24□□□□□ -1.09
SCN9A-201ENST00000303354 SEC24DO94855 1032 aaPredicted RBP8.24□□□□□ -1.09
SCN9A-201ENST00000303354 CYP2C19P33261 490 aa8.24□□□□□ -1.09
SCN9A-201ENST00000303354 GJC2Q5T442 439 aaPredicted RBP8.24□□□□□ -1.09
SCN9A-201ENST00000303354 TDRD10Q5VZ19 366 aaKnown RBP8.24□□□□□ -1.09
SCN9A-201ENST00000303354 SLC44A2Q8IWA5 706 aaPredicted RBP8.24□□□□□ -1.09
SCN9A-201ENST00000303354 CRAMP1Q96RY5 1269 aa8.24□□□□□ -1.09
SCN9A-201ENST00000303354 POP1Q99575 1024 aaKnown RBP8.24□□□□□ -1.09
SCN9A-201ENST00000303354 GPATCH2LQ9NWQ4 482 aa8.24□□□□□ -1.09
SCN9A-201ENST00000303354 SCINQ9Y6U3 715 aa8.24□□□□□ -1.09
SCN9A-201ENST00000303354 RGS12O14924 1447 aa8.24□□□□□ -1.09
SCN9A-201ENST00000303354 hCG_1984214I3L0E3 225 aa8.24□□□□□ -1.09
SCN9A-201ENST00000303354 ZNF185O15231 689 aa8.24□□□□□ -1.09
SCN9A-201ENST00000303354 LZTS3O60299 673 aaPredicted RBP8.24□□□□□ -1.09
SCN9A-201ENST00000303354 KRT14P02533 472 aa8.24□□□□□ -1.09
SCN9A-201ENST00000303354 HSPA6P17066 643 aa8.24□□□□□ -1.09
SCN9A-201ENST00000303354 NFKBIAP25963 317 aa8.24□□□□□ -1.09
SCN9A-201ENST00000303354 CHSY1Q86X52 802 aa8.24□□□□□ -1.09
SCN9A-201ENST00000303354 ZNF713Q8N859 430 aaPredicted RBP8.24□□□□□ -1.09
SCN9A-201ENST00000303354 TRAPPC12Q8WVT3 735 aa8.24□□□□□ -1.09
SCN9A-201ENST00000303354 PTCH1Q13635 1447 aa8.24□□□□□ -1.09
SCN9A-201ENST00000303354 EEF2KO00418 725 aaKnown RBP8.24□□□□□ -1.09
SCN9A-201ENST00000303354 SPATA31D3P0C874 917 aa8.24□□□□□ -1.09
SCN9A-201ENST00000303354 ZNF445P59923 1031 aa8.24□□□□□ -1.09
SCN9A-201ENST00000303354 RESP18Q5W5W9 173 aa8.24□□□□□ -1.09
SCN9A-201ENST00000303354 SPATA31D4Q6ZUB0 917 aa8.24□□□□□ -1.09
SCN9A-201ENST00000303354 PURBQ96QR8 312 aaKnown RBP8.24□□□□□ -1.09
SCN9A-201ENST00000303354 ZBTB18Q99592 522 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms