RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 CASP8Q14790 479 aa19.61■□□□□ 0.73
PCDH1-201ENST00000287008 KLHL38Q2WGJ6 581 aa19.61■□□□□ 0.73
PCDH1-201ENST00000287008 WDR75Q8IWA0 830 aaKnown RBP19.61■□□□□ 0.73
PCDH1-201ENST00000287008 PPM1NQ8N819 430 aa19.61■□□□□ 0.73
PCDH1-201ENST00000287008 ARRDC4Q8NCT1 418 aa19.61■□□□□ 0.73
PCDH1-201ENST00000287008 KAZALD1Q96I82 304 aa19.61■□□□□ 0.73
PCDH1-201ENST00000287008 BUD13Q9BRD0 619 aaKnown RBP eCLIP19.61■□□□□ 0.73
PCDH1-201ENST00000287008 C17orf102A2RUQ5 167 aa19.61■□□□□ 0.73
PCDH1-201ENST00000287008 EIF3DO15371 548 aaKnown RBP eCLIP19.61■□□□□ 0.73
PCDH1-201ENST00000287008 HLA-DRAP01903 254 aa19.61■□□□□ 0.73
PCDH1-201ENST00000287008 TMEM169Q96HH4 297 aa19.61■□□□□ 0.73
PCDH1-201ENST00000287008 EFHD1Q9BUP0 239 aa19.61■□□□□ 0.73
PCDH1-201ENST00000287008 SLC13A4Q9UKG4 626 aa19.61■□□□□ 0.73
PCDH1-201ENST00000287008 NR1D1P20393 614 aa19.6■□□□□ 0.73
PCDH1-201ENST00000287008 NOP14P78316 857 aaKnown RBP19.6■□□□□ 0.73
PCDH1-201ENST00000287008 NSUN2Q08J23 767 aaKnown RBP eCLIP19.6■□□□□ 0.73
PCDH1-201ENST00000287008 SAMD3Q8N6K7 520 aa19.6■□□□□ 0.73
PCDH1-201ENST00000287008 N4BP2L2Q92802 583 aaPredicted RBP19.6■□□□□ 0.73
PCDH1-201ENST00000287008 EXOC4Q96A65 974 aa19.6■□□□□ 0.73
PCDH1-201ENST00000287008 GNGT2O14610 69 aa19.6■□□□□ 0.73
PCDH1-201ENST00000287008 UCHL3P15374 230 aa19.6■□□□□ 0.73
PCDH1-201ENST00000287008 TMPRSS15P98073 1019 aa19.6■□□□□ 0.73
PCDH1-201ENST00000287008 MGAT5BQ3V5L5 792 aa19.6■□□□□ 0.73
PCDH1-201ENST00000287008 MAP1SQ66K74 1059 aaPredicted RBP19.6■□□□□ 0.73
PCDH1-201ENST00000287008 ZC3H18Q86VM9 953 aaKnown RBP19.6■□□□□ 0.73
PCDH1-201ENST00000287008 SH3TC2Q8TF17 1288 aa19.6■□□□□ 0.73
PCDH1-201ENST00000287008 TTC17Q96AE7 1141 aa19.6■□□□□ 0.73
PCDH1-201ENST00000287008 OSBPL9Q96SU4 736 aa19.6■□□□□ 0.73
PCDH1-201ENST00000287008 DDTLA6NHG4 134 aaPredicted RBP19.6■□□□□ 0.73
PCDH1-201ENST00000287008 MAP3K7O43318 606 aa19.6■□□□□ 0.73
PCDH1-201ENST00000287008 STAG3L1P0CL83 205 aa19.6■□□□□ 0.73
PCDH1-201ENST00000287008 FDPSP14324 419 aaKnown RBP19.6■□□□□ 0.73
PCDH1-201ENST00000287008 SLC1A1P43005 524 aa19.6■□□□□ 0.73
PCDH1-201ENST00000287008 IFT88Q13099 833 aa19.6■□□□□ 0.73
PCDH1-201ENST00000287008 TTC30BQ8N4P2 665 aa19.6■□□□□ 0.73
PCDH1-201ENST00000287008 SEPT5Q99719 369 aaPredicted RBP19.6■□□□□ 0.73
PCDH1-201ENST00000287008 UVRAGQ9P2Y5 699 aa19.6■□□□□ 0.73
PCDH1-201ENST00000287008 PI4K2BG5E9Z4 385 aa19.6■□□□□ 0.73
PCDH1-201ENST00000287008 MSH4O15457 936 aa19.6■□□□□ 0.73
PCDH1-201ENST00000287008 SKIP12755 728 aa19.6■□□□□ 0.73
PCDH1-201ENST00000287008 SNX17Q15036 470 aa19.6■□□□□ 0.73
PCDH1-201ENST00000287008 UBE2Q2Q8WVN8 375 aa19.6■□□□□ 0.73
PCDH1-201ENST00000287008 GMCL1Q96IK5 515 aa19.6■□□□□ 0.73
PCDH1-201ENST00000287008 PCDHB2Q9Y5E7 798 aa19.6■□□□□ 0.73
PCDH1-201ENST00000287008 TAF6LQ9Y6J9 622 aa19.6■□□□□ 0.73
PCDH1-201ENST00000287008 NCF2P19878 526 aaPredicted RBP19.59■□□□□ 0.73
PCDH1-201ENST00000287008 THPOP40225 353 aa19.59■□□□□ 0.73
PCDH1-201ENST00000287008 IL1RL1Q01638 556 aa19.59■□□□□ 0.73
PCDH1-201ENST00000287008 CATSPER3Q86XQ3 398 aa19.59■□□□□ 0.73
PCDH1-201ENST00000287008 ZBTB18Q99592 522 aa19.59■□□□□ 0.73
PCDH1-201ENST00000287008 KPNA7A9QM74 516 aa19.59■□□□□ 0.73
PCDH1-201ENST00000287008 HMGB1P1B2RPK0 211 aaPredicted RBP19.59■□□□□ 0.73
PCDH1-201ENST00000287008 DFFAO00273 331 aa19.59■□□□□ 0.73
PCDH1-201ENST00000287008 VCAM1P19320 739 aa19.59■□□□□ 0.73
PCDH1-201ENST00000287008 PDZD8Q8NEN9 1154 aa19.59■□□□□ 0.73
PCDH1-201ENST00000287008 ABCB6Q9NP58 842 aa19.59■□□□□ 0.73
PCDH1-201ENST00000287008 RASA4BC9J798 803 aa19.59■□□□□ 0.73
PCDH1-201ENST00000287008 APOL1O14791 398 aa19.59■□□□□ 0.73
PCDH1-201ENST00000287008 RASA4O43374 803 aa19.59■□□□□ 0.73
PCDH1-201ENST00000287008 MX2P20592 715 aa19.59■□□□□ 0.73
PCDH1-201ENST00000287008 SESN3P58005 492 aa19.59■□□□□ 0.73
PCDH1-201ENST00000287008 KRT17Q04695 432 aa19.59■□□□□ 0.73
PCDH1-201ENST00000287008 NR1H3Q13133 447 aa19.59■□□□□ 0.73
PCDH1-201ENST00000287008 SPARCL1Q14515 664 aa19.59■□□□□ 0.73
PCDH1-201ENST00000287008 NFRKBQ6P4R8 1299 aa19.59■□□□□ 0.73
PCDH1-201ENST00000287008 CRLF3Q8IUI8 442 aa19.59■□□□□ 0.73
PCDH1-201ENST00000287008 STKLD1Q8NE28 680 aa19.59■□□□□ 0.73
PCDH1-201ENST00000287008 SLITRK1Q96PX8 696 aa19.59■□□□□ 0.73
PCDH1-201ENST00000287008 NIF3L1Q9GZT8 377 aa19.59■□□□□ 0.73
PCDH1-201ENST00000287008 RGL2O15211 777 aa19.59■□□□□ 0.73
PCDH1-201ENST00000287008 KRT14P02533 472 aa19.59■□□□□ 0.73
PCDH1-201ENST00000287008 IL1R1P14778 569 aa19.59■□□□□ 0.73
PCDH1-201ENST00000287008 SULT1E1P49888 294 aa19.59■□□□□ 0.73
PCDH1-201ENST00000287008 ART3Q13508 389 aa19.59■□□□□ 0.73
PCDH1-201ENST00000287008 PCSK9Q8NBP7 692 aaKnown RBP19.59■□□□□ 0.73
PCDH1-201ENST00000287008 TRIM54Q9BYV2 358 aa19.59■□□□□ 0.73
PCDH1-201ENST00000287008 TMEM8AQ9HCN3 771 aa19.59■□□□□ 0.73
PCDH1-201ENST00000287008 AAASQ9NRG9 546 aa19.59■□□□□ 0.73
PCDH1-201ENST00000287008 FAM49BQ9NUQ9 324 aa19.59■□□□□ 0.73
PCDH1-201ENST00000287008 RIMS1Q86UR5 1692 aaKnown RBP19.59■□□□□ 0.73
PCDH1-201ENST00000287008 F5H423 210 aaPredicted RBP19.58■□□□□ 0.73
PCDH1-201ENST00000287008 PIK3R2O00459 728 aa19.58■□□□□ 0.73
PCDH1-201ENST00000287008 PGK2P07205 417 aa19.58■□□□□ 0.73
PCDH1-201ENST00000287008 PDCD7Q8N8D1 485 aaKnown RBP19.58■□□□□ 0.73
PCDH1-201ENST00000287008 DAGLBQ8NCG7 672 aa19.58■□□□□ 0.73
PCDH1-201ENST00000287008 MIPOL1Q8TD10 442 aa19.58■□□□□ 0.73
PCDH1-201ENST00000287008 GSTA4O15217 222 aa19.58■□□□□ 0.73
PCDH1-201ENST00000287008 EXTL3O43909 919 aa19.58■□□□□ 0.73
PCDH1-201ENST00000287008 POU5F1BQ06416 359 aa19.58■□□□□ 0.73
PCDH1-201ENST00000287008 EFHBQ8N7U6 833 aa19.58■□□□□ 0.73
PCDH1-201ENST00000287008 UBQLN1Q9UMX0 589 aaKnown RBP19.58■□□□□ 0.73
PCDH1-201ENST00000287008 USP32Q8NFA0 1604 aa19.58■□□□□ 0.72
PCDH1-201ENST00000287008 PNPLA4P41247 253 aa19.58■□□□□ 0.72
PCDH1-201ENST00000287008 ALDH7A1P49419 539 aaKnown RBP19.58■□□□□ 0.72
PCDH1-201ENST00000287008 CCDC137Q6PK04 289 aaKnown RBP19.58■□□□□ 0.72
PCDH1-201ENST00000287008 UBA6A0AVT1 1052 aaPredicted RBP19.57■□□□□ 0.72
PCDH1-201ENST00000287008 FAM187AA6NFU0 413 aa19.57■□□□□ 0.72
PCDH1-201ENST00000287008 NPTXRO95502 500 aa19.57■□□□□ 0.72
PCDH1-201ENST00000287008 SLC18A3Q16572 532 aa19.57■□□□□ 0.72
PCDH1-201ENST00000287008 ZNF484Q5JVG2 852 aa19.57■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms