RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 PKD2L1Q9P0L9 805 aa15.32■□□□□ 0.04
SDC1-201ENST00000254351 PCYOX1Q9UHG3 505 aa15.32■□□□□ 0.04
SDC1-201ENST00000254351 TRAF3IP3Q9Y228 551 aa15.32■□□□□ 0.04
SDC1-201ENST00000254351 KDM3AQ9Y4C1 1321 aa15.32■□□□□ 0.04
SDC1-201ENST00000254351 PCNTO95613 3336 aa15.32■□□□□ 0.04
SDC1-201ENST00000254351 EXOC1LA0A1B0GW35 172 aa15.32■□□□□ 0.04
SDC1-201ENST00000254351 MAPK13O15264 365 aa15.32■□□□□ 0.04
SDC1-201ENST00000254351 CYP26A1O43174 497 aa15.32■□□□□ 0.04
SDC1-201ENST00000254351 RXRBP28702 533 aa15.32■□□□□ 0.04
SDC1-201ENST00000254351 ALDH3A1P30838 453 aa15.32■□□□□ 0.04
SDC1-201ENST00000254351 PSMC2P35998 433 aaKnown RBP15.32■□□□□ 0.04
SDC1-201ENST00000254351 PPM1KQ8N3J5 372 aa15.32■□□□□ 0.04
SDC1-201ENST00000254351 ASAP3Q8TDY4 903 aa15.32■□□□□ 0.04
SDC1-201ENST00000254351 NRG4Q8WWG1 115 aa15.32■□□□□ 0.04
SDC1-201ENST00000254351 SERPINB12Q96P63 405 aa15.32■□□□□ 0.04
SDC1-201ENST00000254351 PCMTD2Q9NV79 361 aa15.32■□□□□ 0.04
SDC1-201ENST00000254351 SCOCQ9UIL1 159 aa15.32■□□□□ 0.04
SDC1-201ENST00000254351 NENFQ9UMX5 172 aa15.32■□□□□ 0.04
SDC1-201ENST00000254351 PDXKO00764 312 aa15.31■□□□□ 0.04
SDC1-201ENST00000254351 TP73O15350 636 aa15.31■□□□□ 0.04
SDC1-201ENST00000254351 ATF2P15336 505 aa15.31■□□□□ 0.04
SDC1-201ENST00000254351 RRM1P23921 792 aa15.31■□□□□ 0.04
SDC1-201ENST00000254351 CTNNA2P26232 953 aa15.31■□□□□ 0.04
SDC1-201ENST00000254351 CACNA2D1P54289 1103 aa15.31■□□□□ 0.04
SDC1-201ENST00000254351 ROR2Q01974 943 aaKnown RBP15.31■□□□□ 0.04
SDC1-201ENST00000254351 PKN2Q16513 984 aaKnown RBP15.31■□□□□ 0.04
SDC1-201ENST00000254351 SLC47A2Q86VL8 602 aa15.31■□□□□ 0.04
SDC1-201ENST00000254351 ZNF564Q8TBZ8 553 aaPredicted RBP15.31■□□□□ 0.04
SDC1-201ENST00000254351 VPS37BQ9H9H4 285 aa15.31■□□□□ 0.04
SDC1-201ENST00000254351 APEX2Q9UBZ4 518 aa15.31■□□□□ 0.04
SDC1-201ENST00000254351 PCDHA1Q9Y5I3 950 aa15.31■□□□□ 0.04
SDC1-201ENST00000254351 RREB1Q92766 1687 aa15.31■□□□□ 0.04
SDC1-201ENST00000254351 A0A1W2PPM1 405 aa15.31■□□□□ 0.04
SDC1-201ENST00000254351 ZBED4O75132 1171 aa15.31■□□□□ 0.04
SDC1-201ENST00000254351 PIK3CAP42336 1068 aa15.31■□□□□ 0.04
SDC1-201ENST00000254351 GPC5P78333 572 aa15.31■□□□□ 0.04
SDC1-201ENST00000254351 CDR2Q01850 454 aa15.31■□□□□ 0.04
SDC1-201ENST00000254351 FASTKD3Q14CZ7 662 aaKnown RBP15.31■□□□□ 0.04
SDC1-201ENST00000254351 KAZNQ674X7 775 aa15.31■□□□□ 0.04
SDC1-201ENST00000254351 MFSD5Q6N075 450 aa15.31■□□□□ 0.04
SDC1-201ENST00000254351 PPP4R3CPQ6ZMV5 832 aa15.31■□□□□ 0.04
SDC1-201ENST00000254351 TEX9Q8N6V9 391 aa15.31■□□□□ 0.04
SDC1-201ENST00000254351 NEDD1Q8NHV4 660 aa15.31■□□□□ 0.04
SDC1-201ENST00000254351 USTQ9Y2C2 406 aa15.31■□□□□ 0.04
SDC1-201ENST00000254351 WASF2Q9Y6W5 498 aa15.31■□□□□ 0.04
SDC1-201ENST00000254351 GOLGA8IPA6NC78 632 aa15.3■□□□□ 0.04
SDC1-201ENST00000254351 FAM47DPA6NHR8 397 aa15.3■□□□□ 0.04
SDC1-201ENST00000254351 GOLGA8JA6NMD2 632 aa15.3■□□□□ 0.04
SDC1-201ENST00000254351 ZSCAN5DPP0CG00 497 aa15.3■□□□□ 0.04
SDC1-201ENST00000254351 CNGA1P29973 690 aa15.3■□□□□ 0.04
SDC1-201ENST00000254351 ATP5DP30049 168 aa15.3■□□□□ 0.04
SDC1-201ENST00000254351 DRG2P55039 364 aaKnown RBP15.3■□□□□ 0.04
SDC1-201ENST00000254351 ZBTB16Q05516 673 aa15.3■□□□□ 0.04
SDC1-201ENST00000254351 MTMR2Q13614 643 aa15.3■□□□□ 0.04
SDC1-201ENST00000254351 PPP2R5EQ16537 467 aa15.3■□□□□ 0.04
SDC1-201ENST00000254351 TMEM63BQ5T3F8 832 aa15.3■□□□□ 0.04
SDC1-201ENST00000254351 EZH1Q92800 747 aaPredicted RBP15.3■□□□□ 0.04
SDC1-201ENST00000254351 HAUS1Q96CS2 278 aa15.3■□□□□ 0.04
SDC1-201ENST00000254351 MIPEPQ99797 713 aa15.3■□□□□ 0.04
SDC1-201ENST00000254351 LRMDAQ9H2I8 198 aa15.3■□□□□ 0.04
SDC1-201ENST00000254351 RIOX1Q9H6W3 641 aa15.3■□□□□ 0.04
SDC1-201ENST00000254351 METTL14Q9HCE5 456 aaKnown RBP15.3■□□□□ 0.04
SDC1-201ENST00000254351 FBXO6Q9NRD1 293 aaPredicted RBP15.3■□□□□ 0.04
SDC1-201ENST00000254351 ARMCX1Q9P291 453 aa15.3■□□□□ 0.04
SDC1-201ENST00000254351 RGS17Q9UGC6 210 aaPredicted RBP15.3■□□□□ 0.04
SDC1-201ENST00000254351 FRMD4BQ9Y2L6 1034 aa15.3■□□□□ 0.04
SDC1-201ENST00000254351 COL5A3P25940 1745 aaPredicted RBP15.3■□□□□ 0.04
SDC1-201ENST00000254351 BAG2O95816 211 aa15.3■□□□□ 0.04
SDC1-201ENST00000254351 FGFR1P11362 822 aa15.3■□□□□ 0.04
SDC1-201ENST00000254351 ZNF76P36508 570 aa15.3■□□□□ 0.04
SDC1-201ENST00000254351 TRAF1Q13077 416 aa15.3■□□□□ 0.04
SDC1-201ENST00000254351 NFIXQ14938 502 aa15.3■□□□□ 0.04
SDC1-201ENST00000254351 RNF43Q68DV7 783 aa15.3■□□□□ 0.04
SDC1-201ENST00000254351 TRMT10CQ7L0Y3 403 aaKnown RBP15.3■□□□□ 0.04
SDC1-201ENST00000254351 KIFAP3Q92845 792 aa15.3■□□□□ 0.04
SDC1-201ENST00000254351 MCUR1Q96AQ8 359 aa15.3■□□□□ 0.04
SDC1-201ENST00000254351 RNF8O76064 485 aa15.3■□□□□ 0.04
SDC1-201ENST00000254351 SPATA31C1P0DKV0 1188 aa15.3■□□□□ 0.04
SDC1-201ENST00000254351 SLC1A5Q15758 541 aa15.3■□□□□ 0.04
SDC1-201ENST00000254351 HHATQ5VTY9 493 aa15.3■□□□□ 0.04
SDC1-201ENST00000254351 VPS52Q8N1B4 723 aa15.3■□□□□ 0.04
SDC1-201ENST00000254351 WDR60Q8WVS4 1066 aa15.3■□□□□ 0.04
SDC1-201ENST00000254351 ROPN1BQ9BZX4 212 aaPredicted RBP15.3■□□□□ 0.04
SDC1-201ENST00000254351 VCXQ9H320 206 aa15.3■□□□□ 0.04
SDC1-201ENST00000254351 ROPN1Q9HAT0 212 aaPredicted RBP15.3■□□□□ 0.04
SDC1-201ENST00000254351 SAYSD1Q9NPB0 183 aa15.3■□□□□ 0.04
SDC1-201ENST00000254351 NCANO14594 1321 aa15.3■□□□□ 0.04
SDC1-201ENST00000254351 NUP98P52948 1817 aa15.29■□□□□ 0.04
SDC1-201ENST00000254351 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP15.29■□□□□ 0.04
SDC1-201ENST00000254351 NEK3P51956 506 aa15.29■□□□□ 0.04
SDC1-201ENST00000254351 SEPT7Q16181 437 aaKnown RBP15.29■□□□□ 0.04
SDC1-201ENST00000254351 TNFAIP8L3Q5GJ75 292 aa15.29■□□□□ 0.04
SDC1-201ENST00000254351 SYCP2LQ5T4T6 812 aa15.29■□□□□ 0.04
SDC1-201ENST00000254351 TBC1D9BQ66K14 1250 aa15.29■□□□□ 0.04
SDC1-201ENST00000254351 CCDC125Q86Z20 511 aa15.29■□□□□ 0.04
SDC1-201ENST00000254351 GALNT15Q8N3T1 639 aa15.29■□□□□ 0.04
SDC1-201ENST00000254351 SLC25A41Q8N5S1 370 aa15.29■□□□□ 0.04
SDC1-201ENST00000254351 RBBP8NLQ8NC74 664 aaPredicted RBP15.29■□□□□ 0.04
SDC1-201ENST00000254351 CCDC127Q96BQ5 260 aa15.29■□□□□ 0.04
SDC1-201ENST00000254351 GBP5Q96PP8 586 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms