RNA–Protein interactions for RNA: ENST00000252816.10

LSM4-201, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM4, Length 986 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-201ENST00000252816 AXDND1Q5T1B0 1012 aaPredicted RBP25.13■■□□□ 1.61
LSM4-201ENST00000252816 KIAA0319Q5VV43 1072 aa25.13■■□□□ 1.61
LSM4-201ENST00000252816 FUT10Q6P4F1 479 aa25.13■■□□□ 1.61
LSM4-201ENST00000252816 PDILTQ8N807 584 aa25.13■■□□□ 1.61
LSM4-201ENST00000252816 TMEM87AQ8NBN3 555 aa25.13■■□□□ 1.61
LSM4-201ENST00000252816 SLC22A17Q8WUG5 538 aa25.13■■□□□ 1.61
LSM4-201ENST00000252816 CASP10Q92851 521 aa25.13■■□□□ 1.61
LSM4-201ENST00000252816 DNAJC19Q96DA6 116 aa25.13■■□□□ 1.61
LSM4-201ENST00000252816 BICD1Q96G01 975 aa25.13■■□□□ 1.61
LSM4-201ENST00000252816 B3GALT6Q96L58 329 aa25.13■■□□□ 1.61
LSM4-201ENST00000252816 ACAP3Q96P50 834 aa25.13■■□□□ 1.61
LSM4-201ENST00000252816 KLHL5Q96PQ7 755 aa25.13■■□□□ 1.61
LSM4-201ENST00000252816 S1PR5Q9H228 398 aa25.13■■□□□ 1.61
LSM4-201ENST00000252816 MRPL17Q9NRX2 175 aaKnown RBP25.13■■□□□ 1.61
LSM4-201ENST00000252816 USP15Q9Y4E8 981 aaPredicted RBP25.13■■□□□ 1.61
LSM4-201ENST00000252816 SMIM28A0A1B0GU29 152 aa25.12■■□□□ 1.61
LSM4-201ENST00000252816 TADA2AO75478 443 aa25.12■■□□□ 1.61
LSM4-201ENST00000252816 KIF4AO95239 1232 aa25.12■■□□□ 1.61
LSM4-201ENST00000252816 URODP06132 367 aa25.12■■□□□ 1.61
LSM4-201ENST00000252816 SRGAP2BP0DMP2 458 aa25.12■■□□□ 1.61
LSM4-201ENST00000252816 YARSP54577 528 aaKnown RBP25.12■■□□□ 1.61
LSM4-201ENST00000252816 DNM1Q05193 864 aaKnown RBP25.12■■□□□ 1.61
LSM4-201ENST00000252816 ZP2Q05996 745 aa25.12■■□□□ 1.61
LSM4-201ENST00000252816 SHC4Q6S5L8 630 aa25.12■■□□□ 1.61
LSM4-201ENST00000252816 SFR1Q86XK3 245 aa25.12■■□□□ 1.61
LSM4-201ENST00000252816 HASPINQ8TF76 798 aa25.12■■□□□ 1.61
LSM4-201ENST00000252816 SNX27Q96L92 541 aa25.12■■□□□ 1.61
LSM4-201ENST00000252816 APOL5Q9BWW9 433 aa25.12■■□□□ 1.61
LSM4-201ENST00000252816 TOPORSQ9NS56 1045 aaPredicted RBP25.12■■□□□ 1.61
LSM4-201ENST00000252816 CHST7Q9NS84 486 aa25.12■■□□□ 1.61
LSM4-201ENST00000252816 PRKAG3Q9UGI9 489 aa25.12■■□□□ 1.61
LSM4-201ENST00000252816 ZDHHC9Q9Y397 364 aa25.12■■□□□ 1.61
LSM4-201ENST00000252816 TRIP11Q15643 1979 aa25.11■■□□□ 1.61
LSM4-201ENST00000252816 CLDN3O15551 220 aa25.11■■□□□ 1.61
LSM4-201ENST00000252816 CUTAO60888 179 aa25.11■■□□□ 1.61
LSM4-201ENST00000252816 EPCAMP16422 314 aa25.11■■□□□ 1.61
LSM4-201ENST00000252816 SCP2P22307 547 aa25.11■■□□□ 1.61
LSM4-201ENST00000252816 IGFBP6P24592 240 aaPredicted RBP25.11■■□□□ 1.61
LSM4-201ENST00000252816 GLUD2P49448 558 aa25.11■■□□□ 1.61
LSM4-201ENST00000252816 GTF2BQ00403 316 aa25.11■■□□□ 1.61
LSM4-201ENST00000252816 DSG1Q02413 1049 aa25.11■■□□□ 1.61
LSM4-201ENST00000252816 ADHFE1Q8IWW8 467 aa25.11■■□□□ 1.61
LSM4-201ENST00000252816 GJD3Q8N144 294 aa25.11■■□□□ 1.61
LSM4-201ENST00000252816 SUSD6Q92537 303 aa25.11■■□□□ 1.61
LSM4-201ENST00000252816 ZMAT2Q96NC0 199 aaKnown RBP25.11■■□□□ 1.61
LSM4-201ENST00000252816 EMILIN2Q9BXX0 1053 aa25.11■■□□□ 1.61
LSM4-201ENST00000252816 PIGRP01833 764 aa25.1■■□□□ 1.61
LSM4-201ENST00000252816 HOXB8P17481 243 aaPredicted RBP25.1■■□□□ 1.61
LSM4-201ENST00000252816 LIG4P49917 911 aa25.1■■□□□ 1.61
LSM4-201ENST00000252816 SOX4Q06945 474 aaPredicted RBP25.1■■□□□ 1.61
LSM4-201ENST00000252816 ZC2HC1CQ53FD0 456 aaPredicted RBP25.1■■□□□ 1.61
LSM4-201ENST00000252816 ATL3Q6DD88 541 aa25.1■■□□□ 1.61
LSM4-201ENST00000252816 SLC39A4Q6P5W5 647 aa25.1■■□□□ 1.61
LSM4-201ENST00000252816 KCNG4Q8TDN1 519 aa25.1■■□□□ 1.61
LSM4-201ENST00000252816 KHSRPQ92945 711 aaKnown RBP eCLIP25.1■■□□□ 1.61
LSM4-201ENST00000252816 GOLGA2P5Q9HBQ8 144 aa25.1■■□□□ 1.61
LSM4-201ENST00000252816 C19orf67A6NJJ6 358 aa25.09■■□□□ 1.61
LSM4-201ENST00000252816 HNRNPDLO14979 420 aaKnown RBP25.09■■□□□ 1.61
LSM4-201ENST00000252816 KCNE1P15382 129 aa25.09■■□□□ 1.61
LSM4-201ENST00000252816 MATR3P43243 847 aaKnown RBP eCLIP25.09■■□□□ 1.61
LSM4-201ENST00000252816 E2F4Q16254 413 aa25.09■■□□□ 1.61
LSM4-201ENST00000252816 SLC10A6Q3KNW5 377 aa25.09■■□□□ 1.61
LSM4-201ENST00000252816 MAP4K3Q8IVH8 894 aa25.09■■□□□ 1.61
LSM4-201ENST00000252816 ST6GALNAC4Q9H4F1 302 aa25.09■■□□□ 1.61
LSM4-201ENST00000252816 RXFP1Q9HBX9 757 aa25.09■■□□□ 1.61
LSM4-201ENST00000252816 CNTN3Q9P232 1028 aa25.09■■□□□ 1.61
LSM4-201ENST00000252816 CDH22Q9UJ99 828 aa25.09■■□□□ 1.61
LSM4-201ENST00000252816 PCDHA7Q9UN72 937 aa25.09■■□□□ 1.61
LSM4-201ENST00000252816 SF3B1O75533 1304 aaKnown RBP eCLIP25.09■■□□□ 1.616e-7■■■■■ 71.8
LSM4-201ENST00000252816 TEX28O15482 410 aa25.08■■□□□ 1.61
LSM4-201ENST00000252816 KLRC2P26717 231 aa25.08■■□□□ 1.61
LSM4-201ENST00000252816 SSTR3P32745 418 aaPredicted RBP25.08■■□□□ 1.61
LSM4-201ENST00000252816 CLCN4P51793 760 aa25.08■■□□□ 1.61
LSM4-201ENST00000252816 CLCNKBP51801 687 aa25.08■■□□□ 1.61
LSM4-201ENST00000252816 USP41Q3LFD5 358 aa25.08■■□□□ 1.61
LSM4-201ENST00000252816 KIAA1841Q6NSI8 718 aa25.08■■□□□ 1.61
LSM4-201ENST00000252816 CD300LGQ6UXG3 332 aa25.08■■□□□ 1.61
LSM4-201ENST00000252816 ZNF720Q7Z2F6 126 aa25.08■■□□□ 1.61
LSM4-201ENST00000252816 PPFIBP1Q86W92 1011 aa25.08■■□□□ 1.61
LSM4-201ENST00000252816 C12orf76Q8N812 135 aaPredicted RBP25.08■■□□□ 1.61
LSM4-201ENST00000252816 STAMQ92783 540 aa25.08■■□□□ 1.61
LSM4-201ENST00000252816 CHAMP1Q96JM3 812 aa25.08■■□□□ 1.61
LSM4-201ENST00000252816 RCOR1Q9UKL0 485 aa25.08■■□□□ 1.61
LSM4-201ENST00000252816 SSX2IPQ9Y2D8 614 aa25.08■■□□□ 1.61
LSM4-201ENST00000252816 FAM189A1O60320 539 aa25.07■■□□□ 1.6
LSM4-201ENST00000252816 PPP1R37O75864 691 aa25.07■■□□□ 1.6
LSM4-201ENST00000252816 ME1P48163 572 aa25.07■■□□□ 1.6
LSM4-201ENST00000252816 UPP1Q16831 310 aa25.07■■□□□ 1.6
LSM4-201ENST00000252816 RTP2Q5QGT7 225 aa25.07■■□□□ 1.6
LSM4-201ENST00000252816 ZBTB41Q5SVQ8 909 aa25.07■■□□□ 1.6
LSM4-201ENST00000252816 KANK3Q6NY19 840 aa25.07■■□□□ 1.6
LSM4-201ENST00000252816 RIN2Q8WYP3 895 aaPredicted RBP25.07■■□□□ 1.6
LSM4-201ENST00000252816 C18orf25Q96B23 403 aaPredicted RBP25.07■■□□□ 1.6
LSM4-201ENST00000252816 DHX58Q96C10 678 aa25.07■■□□□ 1.6
LSM4-201ENST00000252816 STRA6Q9BX79 667 aa25.07■■□□□ 1.6
LSM4-201ENST00000252816 IKZF4Q9H2S9 585 aa25.07■■□□□ 1.6
LSM4-201ENST00000252816 TBC1D7Q9P0N9 293 aa25.07■■□□□ 1.6
LSM4-201ENST00000252816 CFAP45Q9UL16 551 aa25.07■■□□□ 1.6
LSM4-201ENST00000252816 A0A0B4J269 797 aa25.06■■□□□ 1.6
LSM4-201ENST00000252816 FRMD3A2A2Y4 597 aa25.06■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms