RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 NFIL3Q16649 462 aa14.54□□□□□ -0.08
LDLR-201ENST00000252444 PRAMEF18Q5VWM3 479 aa14.54□□□□□ -0.08
LDLR-201ENST00000252444 CENPPQ6IPU0 288 aa14.54□□□□□ -0.08
LDLR-201ENST00000252444 MAGEB5Q9BZ81 275 aa14.54□□□□□ -0.08
LDLR-201ENST00000252444 KLC2Q9H0B6 622 aa14.54□□□□□ -0.08
LDLR-201ENST00000252444 CCDC68Q9H2F9 335 aa14.54□□□□□ -0.08
LDLR-201ENST00000252444 LHX1P48742 406 aa14.54□□□□□ -0.08
LDLR-201ENST00000252444 SLC18A3Q16572 532 aa14.54□□□□□ -0.08
LDLR-201ENST00000252444 ZNF720Q7Z2F6 126 aa14.54□□□□□ -0.08
LDLR-201ENST00000252444 ZNF564Q8TBZ8 553 aaPredicted RBP14.54□□□□□ -0.08
LDLR-201ENST00000252444 MAGOHBQ96A72 148 aaKnown RBP14.54□□□□□ -0.08
LDLR-201ENST00000252444 SMC6Q96SB8 1091 aa14.54□□□□□ -0.08
LDLR-201ENST00000252444 SPTLC3Q9NUV7 552 aa14.54□□□□□ -0.08
LDLR-201ENST00000252444 LSM7Q9UK45 103 aaKnown RBP14.54□□□□□ -0.08
LDLR-201ENST00000252444 AFG3L2Q9Y4W6 797 aa14.54□□□□□ -0.08
LDLR-201ENST00000252444 RIOK3O14730 519 aaKnown RBP14.53□□□□□ -0.08
LDLR-201ENST00000252444 CHRNA3P32297 505 aa14.53□□□□□ -0.08
LDLR-201ENST00000252444 NPEPPSP55786 919 aa14.53□□□□□ -0.08
LDLR-201ENST00000252444 HPCAL4Q9UM19 191 aa14.53□□□□□ -0.08
LDLR-201ENST00000252444 H3BRB1 525 aa14.53□□□□□ -0.08
LDLR-201ENST00000252444 GRIK4Q16099 956 aa14.53□□□□□ -0.08
LDLR-201ENST00000252444 TLK2Q86UE8 772 aa14.53□□□□□ -0.08
LDLR-201ENST00000252444 NRAPQ86VF7 1730 aa14.53□□□□□ -0.08
LDLR-201ENST00000252444 GAS2L3Q86XJ1 694 aa14.53□□□□□ -0.08
LDLR-201ENST00000252444 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.53□□□□□ -0.086e-8■■■□□ 19
LDLR-201ENST00000252444 TUT1Q9H6E5 874 aaKnown RBP14.53□□□□□ -0.08
LDLR-201ENST00000252444 STARD7Q9NQZ5 370 aa14.53□□□□□ -0.08
LDLR-201ENST00000252444 MTSS1O43312 755 aa14.53□□□□□ -0.08
LDLR-201ENST00000252444 TMEM253P0C7T8 217 aa14.53□□□□□ -0.08
LDLR-201ENST00000252444 KPNA1P52294 538 aaPredicted RBP14.53□□□□□ -0.08
LDLR-201ENST00000252444 SP3Q02447 781 aa14.53□□□□□ -0.08
LDLR-201ENST00000252444 SLC30A10Q6XR72 485 aa14.53□□□□□ -0.08
LDLR-201ENST00000252444 PPM1EQ8WY54 764 aa14.53□□□□□ -0.08
LDLR-201ENST00000252444 DESI2Q9BSY9 194 aa14.53□□□□□ -0.08
LDLR-201ENST00000252444 TADA2AO75478 443 aa14.53□□□□□ -0.08
LDLR-201ENST00000252444 PSMD10O75832 226 aa14.53□□□□□ -0.08
LDLR-201ENST00000252444 MOCS3O95396 460 aa14.53□□□□□ -0.08
LDLR-201ENST00000252444 MYBP10242 640 aa14.53□□□□□ -0.08
LDLR-201ENST00000252444 DRP2Q13474 957 aa14.53□□□□□ -0.08
LDLR-201ENST00000252444 DHX34Q14147 1143 aaKnown RBP14.53□□□□□ -0.08
LDLR-201ENST00000252444 RCOR2Q8IZ40 523 aa14.53□□□□□ -0.08
LDLR-201ENST00000252444 ANAPC5Q9UJX4 755 aa14.53□□□□□ -0.08
LDLR-201ENST00000252444 AGAP1Q9UPQ3 857 aa14.53□□□□□ -0.08
LDLR-201ENST00000252444 ITGB4P16144 1822 aa14.53□□□□□ -0.08
LDLR-201ENST00000252444 XPAP23025 273 aaPredicted RBP14.52□□□□□ -0.08
LDLR-201ENST00000252444 KRT35Q92764 455 aa14.52□□□□□ -0.08
LDLR-201ENST00000252444 SAAL1Q96ER3 474 aa14.52□□□□□ -0.08
LDLR-201ENST00000252444 PLEKHA5Q9HAU0 1116 aa14.52□□□□□ -0.08
LDLR-201ENST00000252444 C4AP0C0L4 1744 aa14.52□□□□□ -0.08
LDLR-201ENST00000252444 UMODL1Q5DID0 1318 aa14.52□□□□□ -0.08
LDLR-201ENST00000252444 GOLGA8SH3BPF8 625 aa14.52□□□□□ -0.08
LDLR-201ENST00000252444 ZRANB2O95218 330 aaKnown RBP eCLIP14.52□□□□□ -0.08
LDLR-201ENST00000252444 NPTX2P47972 431 aa14.52□□□□□ -0.08
LDLR-201ENST00000252444 PLCB4Q15147 1175 aa14.52□□□□□ -0.08
LDLR-201ENST00000252444 SCARA5Q6ZMJ2 495 aa14.52□□□□□ -0.08
LDLR-201ENST00000252444 ZDHHC17Q8IUH5 632 aa14.52□□□□□ -0.08
LDLR-201ENST00000252444 SLAIN1Q8ND83 568 aa14.52□□□□□ -0.08
LDLR-201ENST00000252444 FRMD8Q9BZ67 464 aaPredicted RBP14.52□□□□□ -0.08
LDLR-201ENST00000252444 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.52□□□□□ -0.08
LDLR-201ENST00000252444 CPA4Q9UI42 421 aa14.52□□□□□ -0.08
LDLR-201ENST00000252444 DERAQ9Y315 318 aa14.52□□□□□ -0.08
LDLR-201ENST00000252444 Q9Y3F1 56 aa14.52□□□□□ -0.08
LDLR-201ENST00000252444 FSTL1Q12841 308 aa14.52□□□□□ -0.09
LDLR-201ENST00000252444 CCDC110Q8TBZ0 833 aa14.52□□□□□ -0.09
LDLR-201ENST00000252444 HLA-DRAP01903 254 aa14.52□□□□□ -0.09
LDLR-201ENST00000252444 VDRP11473 427 aa14.52□□□□□ -0.09
LDLR-201ENST00000252444 PSMC1P62191 440 aaKnown RBP14.52□□□□□ -0.09
LDLR-201ENST00000252444 ACBD5Q5T8D3 534 aaPredicted RBP14.52□□□□□ -0.09
LDLR-201ENST00000252444 LBX2Q6XYB7 198 aa14.52□□□□□ -0.09
LDLR-201ENST00000252444 FBXO16Q8IX29 292 aaPredicted RBP14.52□□□□□ -0.09
LDLR-201ENST00000252444 EPAS1Q99814 870 aa14.52□□□□□ -0.09
LDLR-201ENST00000252444 VPS37BQ9H9H4 285 aa14.52□□□□□ -0.09
LDLR-201ENST00000252444 CHST12Q9NRB3 414 aa14.52□□□□□ -0.09
LDLR-201ENST00000252444 ACKR2O00590 384 aa14.51□□□□□ -0.09
LDLR-201ENST00000252444 TOMM70O94826 608 aa14.51□□□□□ -0.09
LDLR-201ENST00000252444 SPRYD7Q5W111 196 aa14.51□□□□□ -0.09
LDLR-201ENST00000252444 ALS2CLQ60I27 953 aa14.51□□□□□ -0.09
LDLR-201ENST00000252444 EMBQ6PCB8 327 aa14.51□□□□□ -0.09
LDLR-201ENST00000252444 RUSC1Q9BVN2 902 aa14.51□□□□□ -0.09
LDLR-201ENST00000252444 INPP5FQ9Y2H2 1132 aa14.51□□□□□ -0.09
LDLR-201ENST00000252444 DPYSL4O14531 572 aa14.51□□□□□ -0.09
LDLR-201ENST00000252444 PPP1R12AO14974 1030 aaPredicted RBP14.51□□□□□ -0.09
LDLR-201ENST00000252444 ATP1A3P13637 1013 aa14.51□□□□□ -0.09
LDLR-201ENST00000252444 PTPN11Q06124 597 aaPredicted RBP14.51□□□□□ -0.09
LDLR-201ENST00000252444 STK4Q13043 487 aa14.51□□□□□ -0.09
LDLR-201ENST00000252444 NAB2Q15742 525 aa14.51□□□□□ -0.09
LDLR-201ENST00000252444 HHATQ5VTY9 493 aa14.51□□□□□ -0.09
LDLR-201ENST00000252444 BTBD8Q5XKL5 378 aa14.51□□□□□ -0.09
LDLR-201ENST00000252444 L3MBTL3Q96JM7 780 aaPredicted RBP14.51□□□□□ -0.09
LDLR-201ENST00000252444 ZWILCHQ9H900 591 aa14.51□□□□□ -0.09
LDLR-201ENST00000252444 ANAPC7Q9UJX3 599 aa14.51□□□□□ -0.09
LDLR-201ENST00000252444 THSD7AQ9UPZ6 1657 aa14.51□□□□□ -0.09
LDLR-201ENST00000252444 MYH3P11055 1940 aa14.51□□□□□ -0.09
LDLR-201ENST00000252444 TBC1D8O95759 1140 aa14.51□□□□□ -0.09
LDLR-201ENST00000252444 UCHL3P15374 230 aa14.51□□□□□ -0.09
LDLR-201ENST00000252444 SLC27A1Q6PCB7 646 aa14.51□□□□□ -0.09
LDLR-201ENST00000252444 DARS2Q6PI48 645 aaKnown RBP14.51□□□□□ -0.09
LDLR-201ENST00000252444 GPR142Q7Z601 462 aa14.51□□□□□ -0.09
LDLR-201ENST00000252444 MAP4K3Q8IVH8 894 aa14.51□□□□□ -0.09
LDLR-201ENST00000252444 C18orf8Q96DM3 657 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms