RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 PPP2R1AP30153 589 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 LIG4P49917 911 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 ALDH5A1P51649 535 aaPredicted RBP2.93□□□□□ -1.94
SCN1A-219ENST00000641575 PUS10Q3MIT2 529 aaKnown RBP2.93□□□□□ -1.94
SCN1A-219ENST00000641575 NCAPH2Q6IBW4 605 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 PIK3AP1Q6ZUJ8 805 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 CATSPER1Q8NEC5 780 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 WARS2Q9UGM6 360 aaKnown RBP2.93□□□□□ -1.94
SCN1A-219ENST00000641575 LAMC1P11047 1609 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 PIGBOS1A0A0B4J2F0 54 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 ARHGEF35A5YM69 484 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 PDE2AO00408 941 aaPredicted RBP2.93□□□□□ -1.94
SCN1A-219ENST00000641575 TOMM70O94826 608 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 SNX4O95219 450 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 IL1AP01583 271 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 MMEP08473 750 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 CLCN6P51797 869 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 RBM6P78332 1123 aaKnown RBP2.93□□□□□ -1.94
SCN1A-219ENST00000641575 PLIN5Q00G26 463 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 CCDC85BQ15834 202 aaPredicted RBP2.93□□□□□ -1.94
SCN1A-219ENST00000641575 PKN2Q16513 984 aaKnown RBP2.93□□□□□ -1.94
SCN1A-219ENST00000641575 PLEKHM3Q6ZWE6 761 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 CCDC103Q8IW40 242 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 ARHGEF19Q8IW93 802 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 HDAC11Q96DB2 347 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 IFT43Q96FT9 208 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 TCEANC2Q96MN5 208 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 OLFM1Q99784 485 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 GNL3Q9BVP2 549 aaKnown RBP eCLIP2.93□□□□□ -1.94
SCN1A-219ENST00000641575 TRIM31Q9BZY9 425 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 ATP8A2Q9NTI2 1148 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 TRPM5Q9NZQ8 1165 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 ZC3H7BQ9UGR2 993 aaKnown RBP2.93□□□□□ -1.94
SCN1A-219ENST00000641575 DDX52Q9Y2R4 599 aaKnown RBP eCLIP2.93□□□□□ -1.94
SCN1A-219ENST00000641575 PPIP5K1Q6PFW1 1433 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 SPEF2Q9C093 1822 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 MYLKQ15746 1914 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 ASB14A6NK59 587 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 ENO4A6NNW6 628 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 E5RI56 91 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 RHOBTB3O94955 611 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 ZSCAN22P10073 491 aaPredicted RBP2.93□□□□□ -1.94
SCN1A-219ENST00000641575 NCF2P19878 526 aaPredicted RBP2.93□□□□□ -1.94
SCN1A-219ENST00000641575 PUDPQ08623 228 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 STARD3Q14849 445 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 NOL9Q5SY16 702 aaKnown RBP2.93□□□□□ -1.94
SCN1A-219ENST00000641575 BHLHB9Q6PI77 547 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 MIGA2Q7L4E1 593 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 ANKRD13AQ8IZ07 590 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 CCDC54Q8NEL0 328 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 WDR48Q8TAF3 677 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 DDI1Q8WTU0 396 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 KCNJ9Q92806 393 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 APBB2Q92870 758 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 MAML3Q96JK9 1138 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 PARK7Q99497 189 aaKnown RBP2.93□□□□□ -1.94
SCN1A-219ENST00000641575 LDHAL6BQ9BYZ2 381 aaPredicted RBP2.93□□□□□ -1.94
SCN1A-219ENST00000641575 PRRG3Q9BZD7 231 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 KLC2Q9H0B6 622 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 UPF3AQ9H1J1 476 aaKnown RBP2.93□□□□□ -1.94
SCN1A-219ENST00000641575 WDR41Q9HAD4 459 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 RRAGDQ9NQL2 400 aaPredicted RBP2.93□□□□□ -1.94
SCN1A-219ENST00000641575 EMC3Q9P0I2 261 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 ARMCX3Q9UH62 379 aaPredicted RBP2.93□□□□□ -1.94
SCN1A-219ENST00000641575 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP2.93□□□□□ -1.94
SCN1A-219ENST00000641575 ABCC11Q96J66 1382 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 TBKBP1A7MCY6 615 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 SUPT3HO75486 399 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 ASNSP08243 561 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 CHMLP26374 656 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 SLC1A4P43007 532 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 AFMP43652 599 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 PAPOLAP51003 745 aaKnown RBP2.93□□□□□ -1.94
SCN1A-219ENST00000641575 PRMT2P55345 433 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 HSD17B7P56937 341 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 C21orf59P57076 290 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 RALGDSQ12967 914 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 HSP90AA4PQ58FG1 418 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 WDR93Q6P2C0 686 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 TMC5Q6UXY8 1006 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 ITIH5Q86UX2 942 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 RAVER2Q9HCJ3 691 aaKnown RBP2.93□□□□□ -1.94
SCN1A-219ENST00000641575 ZDHHC4Q9NPG8 344 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 TRPC4Q9UBN4 977 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 TLN2Q9Y4G6 2542 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 LYNP07948 512 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 DARSP14868 501 aaKnown RBP2.93□□□□□ -1.94
SCN1A-219ENST00000641575 RAG1P15918 1043 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 GCFC2P16383 781 aaKnown RBP2.93□□□□□ -1.94
SCN1A-219ENST00000641575 SCP2P22307 547 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 HSPA2P54652 639 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 WTAPQ15007 396 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 CENPPQ6IPU0 288 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 LRRC49Q8IUZ0 686 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 MFN1Q8IWA4 741 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 KLHL7Q8IXQ5 586 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 TMEM199Q8N511 208 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 MTMR12Q9C0I1 747 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 KLHL25Q9H0H3 589 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 CLSTN2Q9H4D0 955 aa2.93□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms