RNA–Protein interactions for RNA: ENST00000640499.1

VEGFA-231, Transcript of vascular endothelial growth factor A, human

APPRIS P3 TSL 1 (best) BASIC

Gene VEGFA, Length 1,188 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VEGFA-231	ENST00000640499	MAP4K3	Q8IVH8	894 aa		29.25	■■■□□ 2.27
VEGFA-231	ENST00000640499	THNSL1	Q8IYQ7	743 aa		29.25	■■■□□ 2.27
VEGFA-231	ENST00000640499	GLIS3	Q8NEA6	775 aa		29.25	■■■□□ 2.27
VEGFA-231	ENST00000640499	PAGE5	Q96GU1	130 aa		29.25	■■■□□ 2.27
VEGFA-231	ENST00000640499	LMAN2L	Q9H0V9	348 aa		29.25	■■■□□ 2.27
VEGFA-231	ENST00000640499	PRDM6	Q9NQX0	595 aa		29.25	■■■□□ 2.27
VEGFA-231	ENST00000640499	TDRD15	B5MCY1	1934 aa	Known RBP	29.25	■■■□□ 2.27
VEGFA-231	ENST00000640499	TISP43	B9A030	160 aa		29.24	■■■□□ 2.27
VEGFA-231	ENST00000640499	ANKRD63	C9JTQ0	380 aa		29.24	■■■□□ 2.27
VEGFA-231	ENST00000640499	MYB	P10242	640 aa		29.24	■■■□□ 2.27
VEGFA-231	ENST00000640499	AFM	P43652	599 aa		29.24	■■■□□ 2.27
VEGFA-231	ENST00000640499	AMPD3	Q01432	767 aa		29.24	■■■□□ 2.27
VEGFA-231	ENST00000640499	MCL1	Q07820	350 aa		29.24	■■■□□ 2.27
VEGFA-231	ENST00000640499	EHHADH	Q08426	723 aa		29.24	■■■□□ 2.27
VEGFA-231	ENST00000640499	CUL4B	Q13620	913 aa		29.24	■■■□□ 2.27
VEGFA-231	ENST00000640499	NAB2	Q15742	525 aa		29.24	■■■□□ 2.27
VEGFA-231	ENST00000640499	CSPP1	Q1MSJ5	1256 aa		29.24	■■■□□ 2.27
VEGFA-231	ENST00000640499	ALKAL1	Q6UXT8	129 aa		29.24	■■■□□ 2.27
VEGFA-231	ENST00000640499	FSIP1	Q8NA03	581 aa		29.24	■■■□□ 2.27
VEGFA-231	ENST00000640499	TCHP	Q9BT92	498 aa		29.24	■■■□□ 2.27
VEGFA-231	ENST00000640499	LRRC27	Q9C0I9	530 aa		29.24	■■■□□ 2.27
VEGFA-231	ENST00000640499	MRPL44	Q9H9J2	332 aa	Known RBP	29.24	■■■□□ 2.27
VEGFA-231	ENST00000640499	SPG21	Q9NZD8	308 aa		29.24	■■■□□ 2.27
VEGFA-231	ENST00000640499	PCDHGC5	Q9Y5F6	944 aa		29.24	■■■□□ 2.27
VEGFA-231	ENST00000640499	ERVFC1	P60507	584 aa		29.23	■■■□□ 2.27
VEGFA-231	ENST00000640499	OSTN	P61366	133 aa		29.23	■■■□□ 2.27
VEGFA-231	ENST00000640499	PTPRO	Q16827	1216 aa		29.23	■■■□□ 2.27
VEGFA-231	ENST00000640499	SEZ6	Q53EL9	994 aa		29.23	■■■□□ 2.27
VEGFA-231	ENST00000640499	PYM1	Q9BRP8	204 aa	Known RBP	29.23	■■■□□ 2.27
VEGFA-231	ENST00000640499	ANKFY1	Q9P2R3	1169 aa		29.23	■■■□□ 2.27
VEGFA-231	ENST00000640499	FAM189A1	O60320	539 aa		29.22	■■■□□ 2.27
VEGFA-231	ENST00000640499	CSPG5	O95196	566 aa		29.22	■■■□□ 2.27
VEGFA-231	ENST00000640499	SYK	P43405	635 aa		29.22	■■■□□ 2.27
VEGFA-231	ENST00000640499	ALDH7A1	P49419	539 aa	Known RBP	29.22	■■■□□ 2.27
VEGFA-231	ENST00000640499	ASIC1	P78348	528 aa		29.22	■■■□□ 2.27
VEGFA-231	ENST00000640499	NOLC1	Q14978	699 aa	Known RBP eCLIP	29.22	■■■□□ 2.27
VEGFA-231	ENST00000640499	XKR4	Q5GH76	650 aa		29.22	■■■□□ 2.27
VEGFA-231	ENST00000640499	CCDC65	Q8IXS2	484 aa		29.22	■■■□□ 2.27
VEGFA-231	ENST00000640499	SLC17A8	Q8NDX2	589 aa		29.22	■■■□□ 2.27
VEGFA-231	ENST00000640499	MRPS27	Q92552	414 aa	Known RBP	29.22	■■■□□ 2.27
VEGFA-231	ENST00000640499	TMEM175	Q9BSA9	504 aa		29.22	■■■□□ 2.27
VEGFA-231	ENST00000640499	VN1R3	Q9BXE9	311 aa		29.22	■■■□□ 2.27
VEGFA-231	ENST00000640499	CACNG4	Q9UBN1	327 aa		29.22	■■■□□ 2.27
VEGFA-231	ENST00000640499	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	29.21	■■■□□ 2.27
VEGFA-231	ENST00000640499	NRP1	O14786	923 aa		29.21	■■■□□ 2.27
VEGFA-231	ENST00000640499	CLDN3	O15551	220 aa		29.21	■■■□□ 2.27
VEGFA-231	ENST00000640499	KLRC4	O43908	158 aa		29.21	■■■□□ 2.27
VEGFA-231	ENST00000640499	HARS	P12081	509 aa	Known RBP	29.21	■■■□□ 2.27
VEGFA-231	ENST00000640499	LIG4	P49917	911 aa		29.21	■■■□□ 2.27
VEGFA-231	ENST00000640499	UBE3A	Q05086	875 aa		29.21	■■■□□ 2.27
VEGFA-231	ENST00000640499	ZBTB41	Q5SVQ8	909 aa		29.21	■■■□□ 2.27
VEGFA-231	ENST00000640499	BICD1	Q96G01	975 aa		29.21	■■■□□ 2.27
VEGFA-231	ENST00000640499	IGSF21	Q96ID5	467 aa		29.21	■■■□□ 2.27
VEGFA-231	ENST00000640499	MARCH5	Q9NX47	278 aa		29.21	■■■□□ 2.27
VEGFA-231	ENST00000640499	CHMP5	Q9NZZ3	219 aa		29.21	■■■□□ 2.27
VEGFA-231	ENST00000640499	LZTS1	Q9Y250	596 aa		29.21	■■■□□ 2.27
VEGFA-231	ENST00000640499		A0A0B4J269	797 aa		29.2	■■■□□ 2.26
VEGFA-231	ENST00000640499		F8W810	466 aa		29.2	■■■□□ 2.26
VEGFA-231	ENST00000640499	FSCN2	O14926	492 aa		29.2	■■■□□ 2.26
VEGFA-231	ENST00000640499	HNRNPDL	O14979	420 aa	Known RBP	29.2	■■■□□ 2.26
VEGFA-231	ENST00000640499	HOXD13	P35453	343 aa		29.2	■■■□□ 2.26
VEGFA-231	ENST00000640499	PPM1A	P35813	382 aa		29.2	■■■□□ 2.26
VEGFA-231	ENST00000640499	GRIK3	Q13003	919 aa		29.2	■■■□□ 2.26
VEGFA-231	ENST00000640499	TCEAL5	Q5H9L2	206 aa		29.2	■■■□□ 2.26
VEGFA-231	ENST00000640499	UNC13D	Q70J99	1090 aa		29.2	■■■□□ 2.26
VEGFA-231	ENST00000640499	APBB1IP	Q7Z5R6	666 aa	Predicted RBP	29.2	■■■□□ 2.26
VEGFA-231	ENST00000640499	CEP57L1	Q8IYX8	460 aa		29.2	■■■□□ 2.26
VEGFA-231	ENST00000640499	HVCN1	Q96D96	273 aa		29.2	■■■□□ 2.26
VEGFA-231	ENST00000640499	USP25	Q9UHP3	1055 aa		29.2	■■■□□ 2.26
VEGFA-231	ENST00000640499	STYXL1	Q9Y6J8	313 aa		29.2	■■■□□ 2.26
VEGFA-231	ENST00000640499	GCNT3	O95395	438 aa		29.19	■■■□□ 2.26
VEGFA-231	ENST00000640499	EFEMP2	O95967	443 aa		29.19	■■■□□ 2.26
VEGFA-231	ENST00000640499	ALDH2	P05091	517 aa		29.19	■■■□□ 2.26
VEGFA-231	ENST00000640499	ADSS	P30520	456 aa		29.19	■■■□□ 2.26
VEGFA-231	ENST00000640499	SLC10A6	Q3KNW5	377 aa		29.19	■■■□□ 2.26
VEGFA-231	ENST00000640499	L1TD1	Q5T7N2	865 aa	Known RBP	29.19	■■■□□ 2.26
VEGFA-231	ENST00000640499	RABGGTA	Q92696	567 aa		29.19	■■■□□ 2.26
VEGFA-231	ENST00000640499	ZMAT2	Q96NC0	199 aa	Known RBP	29.19	■■■□□ 2.26
VEGFA-231	ENST00000640499	FAM193B	Q96PV7	902 aa	Predicted RBP	29.19	■■■□□ 2.26
VEGFA-231	ENST00000640499	PAAF1	Q9BRP4	392 aa		29.19	■■■□□ 2.26
VEGFA-231	ENST00000640499	SPTBN5	Q9NRC6	3674 aa	Known RBP	29.18	■■■□□ 2.26
VEGFA-231	ENST00000640499	PRPF6	O94906	941 aa	Known RBP	29.18	■■■□□ 2.26
VEGFA-231	ENST00000640499	ABCD1	P33897	745 aa		29.18	■■■□□ 2.26
VEGFA-231	ENST00000640499	TNFSF9	P41273	254 aa		29.18	■■■□□ 2.26
VEGFA-231	ENST00000640499	EPM2AIP1	Q7L775	607 aa	Predicted RBP	29.18	■■■□□ 2.26
VEGFA-231	ENST00000640499	ADGRD2	Q7Z7M1	963 aa		29.18	■■■□□ 2.26
VEGFA-231	ENST00000640499	SNX27	Q96L92	541 aa		29.18	■■■□□ 2.26
VEGFA-231	ENST00000640499	ACAP3	Q96P50	834 aa		29.18	■■■□□ 2.26
VEGFA-231	ENST00000640499	PPP1R10	Q96QC0	940 aa	Known RBP	29.18	■■■□□ 2.26
VEGFA-231	ENST00000640499	CCDC94	Q9BW85	323 aa	Predicted RBP	29.18	■■■□□ 2.26
VEGFA-231	ENST00000640499	NSUN3	Q9H649	340 aa	Known RBP	29.18	■■■□□ 2.26
VEGFA-231	ENST00000640499	TLR9	Q9NR96	1032 aa		29.18	■■■□□ 2.26
VEGFA-231	ENST00000640499	TSHZ2	Q9NRE2	1034 aa		29.18	■■■□□ 2.26
VEGFA-231	ENST00000640499	FAN1	Q9Y2M0	1017 aa		29.18	■■■□□ 2.26
VEGFA-231	ENST00000640499	SMIM28	A0A1B0GU29	152 aa		29.17	■■■□□ 2.26
VEGFA-231	ENST00000640499	ZNF202	O95125	648 aa		29.17	■■■□□ 2.26
VEGFA-231	ENST00000640499	PRR29	P0C7W0	189 aa		29.17	■■■□□ 2.26
VEGFA-231	ENST00000640499	GLRA4	Q5JXX5	417 aa		29.17	■■■□□ 2.26
VEGFA-231	ENST00000640499	FMR1NB	Q8N0W7	255 aa	Predicted RBP	29.17	■■■□□ 2.26
VEGFA-231	ENST00000640499	ENGASE	Q8NFI3	743 aa		29.17	■■■□□ 2.26

Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms