RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 GRSF1Q12849 480 aaKnown RBP eCLIP5.34□□□□□ -1.55
SCN1A-218ENST00000640036 PRKAA1Q13131 559 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 FNDC3BQ53EP0 1204 aaKnown RBP5.34□□□□□ -1.55
SCN1A-218ENST00000640036 ATF7IP2Q5U623 682 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 STAG2Q8N3U4 1231 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 RNF217Q8TC41 542 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 ATOH1Q92858 354 aaPredicted RBP5.34□□□□□ -1.55
SCN1A-218ENST00000640036 MRFAP1L1Q96HT8 127 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 AGBL1Q96MI9 1066 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 RUBCNLQ9H714 662 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 TRIM45Q9H8W5 580 aaPredicted RBP5.34□□□□□ -1.55
SCN1A-218ENST00000640036 FBXO28Q9NVF7 368 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 ITIH6Q6UXX5 1313 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 VWDEQ8N2E2 1590 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 KNL1Q8NG31 2342 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 ESRRBO95718 433 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 NR2F2P24468 414 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 GEMIN4P57678 1058 aaKnown RBP5.34□□□□□ -1.55
SCN1A-218ENST00000640036 HTRA3P83110 453 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 MTA1Q13330 715 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 TRIM14Q14142 442 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 PLCL1Q15111 1095 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 GRIK4Q16099 956 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 EXOC3L4Q17RC7 722 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 CD302Q8IX05 232 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 DHX38Q92620 1227 aaKnown RBP5.34□□□□□ -1.55
SCN1A-218ENST00000640036 RMDN1Q96DB5 314 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 CLMNQ96JQ2 1002 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 MOV10L1Q9BXT6 1211 aaKnown RBP5.34□□□□□ -1.55
SCN1A-218ENST00000640036 ACTN4O43707 911 aaKnown RBP5.34□□□□□ -1.56
SCN1A-218ENST00000640036 CIB2O75838 187 aa5.34□□□□□ -1.56
SCN1A-218ENST00000640036 ERVK-10P10266 1014 aa5.34□□□□□ -1.56
SCN1A-218ENST00000640036 GFAPP14136 432 aa5.34□□□□□ -1.56
SCN1A-218ENST00000640036 KCNA5P22460 613 aa5.34□□□□□ -1.56
SCN1A-218ENST00000640036 PPP4CP60510 307 aa5.34□□□□□ -1.56
SCN1A-218ENST00000640036 PRKCEQ02156 737 aa5.34□□□□□ -1.56
SCN1A-218ENST00000640036 STILQ15468 1287 aa5.34□□□□□ -1.56
SCN1A-218ENST00000640036 SLFNL1Q499Z3 407 aa5.34□□□□□ -1.56
SCN1A-218ENST00000640036 C16orf86Q6ZW13 317 aa5.34□□□□□ -1.56
SCN1A-218ENST00000640036 ADCK2Q7Z695 626 aa5.34□□□□□ -1.56
SCN1A-218ENST00000640036 CNGA4Q8IV77 575 aa5.34□□□□□ -1.56
SCN1A-218ENST00000640036 MSL3Q8N5Y2 521 aaKnown RBP5.34□□□□□ -1.56
SCN1A-218ENST00000640036 ARL8AQ96BM9 186 aa5.34□□□□□ -1.56
SCN1A-218ENST00000640036 MFSD14AQ96MC6 490 aa5.34□□□□□ -1.56
SCN1A-218ENST00000640036 CORO1BQ9BR76 489 aa5.34□□□□□ -1.56
SCN1A-218ENST00000640036 KLHL3Q9UH77 587 aa5.34□□□□□ -1.56
SCN1A-218ENST00000640036 A0A1B0GUA9 196 aa5.34□□□□□ -1.56
SCN1A-218ENST00000640036 PDE2AO00408 941 aaPredicted RBP5.34□□□□□ -1.56
SCN1A-218ENST00000640036 ASS1P00966 412 aaKnown RBP5.34□□□□□ -1.56
SCN1A-218ENST00000640036 CLTAP09496 248 aa5.34□□□□□ -1.56
SCN1A-218ENST00000640036 ZNF286BP0CG31 522 aa5.34□□□□□ -1.56
SCN1A-218ENST00000640036 USP41Q3LFD5 358 aa5.34□□□□□ -1.56
SCN1A-218ENST00000640036 AASDHQ4L235 1098 aaPredicted RBP5.34□□□□□ -1.56
SCN1A-218ENST00000640036 EFHC2Q5JST6 749 aa5.34□□□□□ -1.56
SCN1A-218ENST00000640036 SFMBT2Q5VUG0 894 aa5.34□□□□□ -1.56
SCN1A-218ENST00000640036 INTS8Q75QN2 995 aaKnown RBP5.34□□□□□ -1.56
SCN1A-218ENST00000640036 RASGRP4Q8TDF6 673 aa5.34□□□□□ -1.56
SCN1A-218ENST00000640036 MED15Q96RN5 788 aa5.34□□□□□ -1.56
SCN1A-218ENST00000640036 TGS1Q96RS0 853 aaKnown RBP5.34□□□□□ -1.56
SCN1A-218ENST00000640036 TCF25Q9BQ70 676 aa5.34□□□□□ -1.56
SCN1A-218ENST00000640036 ALADP13716 330 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 AXLP30530 894 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 GARSP41250 739 aaKnown RBP5.33□□□□□ -1.56
SCN1A-218ENST00000640036 KCNA10Q16322 511 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 CHSY1Q86X52 802 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 ARFGAP2Q8N6H7 521 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 ATP6V0D2Q8N8Y2 350 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 BHMTQ93088 406 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 FAM213AQ9BRX8 229 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 RSAD1Q9HA92 442 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 ZCCHC17Q9NP64 241 aaKnown RBP5.33□□□□□ -1.56
SCN1A-218ENST00000640036 PTCH2Q9Y6C5 1203 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 CCDC160A6NGH7 325 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 ZNF189O75820 626 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-218ENST00000640036 FAM200BP0CF97 657 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 ADORA2BP29275 332 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 LIFRP42702 1097 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 RASSF2P50749 326 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 HEATR6Q6AI08 1181 aaKnown RBP5.33□□□□□ -1.56
SCN1A-218ENST00000640036 XXYLT1Q8NBI6 393 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 PUS7LQ9H0K6 701 aaKnown RBP5.33□□□□□ -1.56
SCN1A-218ENST00000640036 SPACA6W5XKT8 324 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 ROBO1Q9Y6N7 1651 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 FAM205AQ6ZU69 1335 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 MTHFRP42898 656 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 RABGAP1LQ5R372 815 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 APOA5Q6Q788 366 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 FRA10AC1Q70Z53 315 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 LRRC71Q8N4P6 559 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 TMEM35BQ8NCS4 154 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 OSMRQ99650 979 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 CALN1Q9BXU9 219 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 ANTXR1Q9H6X2 564 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 ZNF541Q9H0D2 1346 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 ABHD14A-ACY1A0A1B0GW23 586 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 MCF2LO15068 1137 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 PRPF3O43395 683 aaKnown RBP5.33□□□□□ -1.56
SCN1A-218ENST00000640036 APODP05090 189 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 RFC2P35250 354 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 MXRA7P84157 204 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms