RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 PADI6Q6TGC4 694 aa17.86■□□□□ 0.45
CLN3-246ENST00000636228 CEP57Q86XR8 500 aa17.86■□□□□ 0.45
CLN3-246ENST00000636228 NOSTRINQ8IVI9 506 aa17.86■□□□□ 0.45
CLN3-246ENST00000636228 MCPH1Q8NEM0 835 aa17.86■□□□□ 0.45
CLN3-246ENST00000636228 POLR3CQ9BUI4 534 aaPredicted RBP17.86■□□□□ 0.45
CLN3-246ENST00000636228 KIFC3Q9BVG8 833 aa17.86■□□□□ 0.45
CLN3-246ENST00000636228 DPP7Q9UHL4 492 aa17.86■□□□□ 0.45
CLN3-246ENST00000636228 DUSP12Q9UNI6 340 aa17.86■□□□□ 0.45
CLN3-246ENST00000636228 KIF4AO95239 1232 aa17.85■□□□□ 0.45
CLN3-246ENST00000636228 IGFBP6P24592 240 aaPredicted RBP17.85■□□□□ 0.45
CLN3-246ENST00000636228 PRPF4BQ13523 1007 aaKnown RBP17.85■□□□□ 0.45
CLN3-246ENST00000636228 ECM1Q16610 540 aa17.85■□□□□ 0.45
CLN3-246ENST00000636228 FAM187BQ17R55 369 aa17.85■□□□□ 0.45
CLN3-246ENST00000636228 EEF1DP3Q658K8 133 aa17.85■□□□□ 0.45
CLN3-246ENST00000636228 ARID2Q68CP9 1835 aa17.85■□□□□ 0.45
CLN3-246ENST00000636228 ELMSAN1Q6PJG2 1045 aa17.85■□□□□ 0.45
CLN3-246ENST00000636228 ASCL5Q7RTU5 278 aa17.85■□□□□ 0.45
CLN3-246ENST00000636228 C8orf76Q96K31 380 aa17.85■□□□□ 0.45
CLN3-246ENST00000636228 PRIMPOLQ96LW4 560 aa17.85■□□□□ 0.45
CLN3-246ENST00000636228 PLEKHA4Q9H4M7 779 aa17.85■□□□□ 0.45
CLN3-246ENST00000636228 FNIP2Q9P278 1114 aa17.85■□□□□ 0.45
CLN3-246ENST00000636228 IGSF9Q9P2J2 1179 aa17.85■□□□□ 0.45
CLN3-246ENST00000636228 GDAQ9Y2T3 454 aa17.85■□□□□ 0.45
CLN3-246ENST00000636228 MYO10Q9HD67 2058 aa17.84■□□□□ 0.45
CLN3-246ENST00000636228 ARHGEF35A5YM69 484 aa17.84■□□□□ 0.45
CLN3-246ENST00000636228 STK25O00506 426 aa17.84■□□□□ 0.45
CLN3-246ENST00000636228 RECQL4O94761 1208 aa17.84■□□□□ 0.45
CLN3-246ENST00000636228 PRKCBP05771 671 aa17.84■□□□□ 0.45
CLN3-246ENST00000636228 OR52Z1P0C646 297 aa17.84■□□□□ 0.45
CLN3-246ENST00000636228 CYP11B2P19099 503 aa17.84■□□□□ 0.45
CLN3-246ENST00000636228 AOC1P19801 751 aa17.84■□□□□ 0.45
CLN3-246ENST00000636228 RPA1P27694 616 aa17.84■□□□□ 0.45
CLN3-246ENST00000636228 TUSC3Q13454 348 aa17.84■□□□□ 0.45
CLN3-246ENST00000636228 NBR1Q14596 966 aa17.84■□□□□ 0.45
CLN3-246ENST00000636228 FAM171A1Q5VUB5 890 aa17.84■□□□□ 0.45
CLN3-246ENST00000636228 GET4Q7L5D6 327 aaPredicted RBP17.84■□□□□ 0.45
CLN3-246ENST00000636228 SLC44A3Q8N4M1 653 aa17.84■□□□□ 0.45
CLN3-246ENST00000636228 ERMNQ8TAM6 284 aa17.84■□□□□ 0.45
CLN3-246ENST00000636228 DEPTORQ8TB45 409 aa17.84■□□□□ 0.45
CLN3-246ENST00000636228 HDAC7Q8WUI4 952 aa17.84■□□□□ 0.45
CLN3-246ENST00000636228 STAMQ92783 540 aa17.84■□□□□ 0.45
CLN3-246ENST00000636228 CLSTN3Q9BQT9 956 aa17.84■□□□□ 0.45
CLN3-246ENST00000636228 PRKD2Q9BZL6 878 aa17.84■□□□□ 0.45
CLN3-246ENST00000636228 CCDC113Q9H0I3 377 aa17.84■□□□□ 0.45
CLN3-246ENST00000636228 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP17.84■□□□□ 0.45
CLN3-246ENST00000636228 EPS15L1Q9UBC2 864 aa17.84■□□□□ 0.45
CLN3-246ENST00000636228 CA14Q9ULX7 337 aa17.84■□□□□ 0.45
CLN3-246ENST00000636228 SF3B1O75533 1304 aaKnown RBP eCLIP17.83■□□□□ 0.443e-9■■■■■ 164.7
CLN3-246ENST00000636228 KRBA1A5PL33 1030 aa17.83■□□□□ 0.44
CLN3-246ENST00000636228 N4BP3O15049 544 aa17.83■□□□□ 0.44
CLN3-246ENST00000636228 ADAM12O43184 909 aa17.83■□□□□ 0.44
CLN3-246ENST00000636228 THP07101 528 aa17.83■□□□□ 0.44
CLN3-246ENST00000636228 NTHL1P78549 312 aa17.83■□□□□ 0.44
CLN3-246ENST00000636228 NAB2Q15742 525 aa17.83■□□□□ 0.44
CLN3-246ENST00000636228 MAPK6Q16659 721 aa17.83■□□□□ 0.44
CLN3-246ENST00000636228 TTC38Q5R3I4 469 aa17.83■□□□□ 0.44
CLN3-246ENST00000636228 CYP26C1Q6V0L0 522 aa17.83■□□□□ 0.44
CLN3-246ENST00000636228 FRMD5Q7Z6J6 570 aa17.83■□□□□ 0.44
CLN3-246ENST00000636228 LNX1Q8TBB1 728 aaPredicted RBP17.83■□□□□ 0.44
CLN3-246ENST00000636228 TTPALQ9BTX7 342 aa17.83■□□□□ 0.44
CLN3-246ENST00000636228 RHOBTB2Q9BYZ6 727 aa17.83■□□□□ 0.44
CLN3-246ENST00000636228 C2orf40Q9H1Z8 148 aa17.83■□□□□ 0.44
CLN3-246ENST00000636228 LIMCH1Q9UPQ0 1083 aa17.83■□□□□ 0.44
CLN3-246ENST00000636228 ACKR2O00590 384 aa17.82■□□□□ 0.44
CLN3-246ENST00000636228 ZMYND10O75800 440 aa17.82■□□□□ 0.44
CLN3-246ENST00000636228 CCT6AP40227 531 aaKnown RBP17.82■□□□□ 0.44
CLN3-246ENST00000636228 NAMPTP43490 491 aa17.82■□□□□ 0.44
CLN3-246ENST00000636228 GRASPQ7Z6J2 395 aaPredicted RBP17.82■□□□□ 0.44
CLN3-246ENST00000636228 BHMT2Q9H2M3 363 aa17.82■□□□□ 0.44
CLN3-246ENST00000636228 ZDHHC7Q9NXF8 308 aa17.82■□□□□ 0.44
CLN3-246ENST00000636228 MYO15AQ9UKN7 3530 aa17.82■□□□□ 0.44
CLN3-246ENST00000636228 DENND4AQ7Z401 1863 aa17.82■□□□□ 0.44
CLN3-246ENST00000636228 DMDP11532 3685 aa17.81■□□□□ 0.44
CLN3-246ENST00000636228 ZFHX2Q9C0A1 2572 aaPredicted RBP17.81■□□□□ 0.44
CLN3-246ENST00000636228 PROB1E7EW31 1015 aa17.81■□□□□ 0.44
CLN3-246ENST00000636228 LAMP2P13473 410 aa17.81■□□□□ 0.44
CLN3-246ENST00000636228 NBL1P41271 181 aa17.81■□□□□ 0.44
CLN3-246ENST00000636228 PSMD5Q16401 504 aa17.81■□□□□ 0.44
CLN3-246ENST00000636228 GLRA4Q5JXX5 417 aa17.81■□□□□ 0.44
CLN3-246ENST00000636228 NT5DC1Q5TFE4 455 aa17.81■□□□□ 0.44
CLN3-246ENST00000636228 C4orf32Q8N8J7 132 aa17.81■□□□□ 0.44
CLN3-246ENST00000636228 GPR152Q8TDT2 470 aa17.81■□□□□ 0.44
CLN3-246ENST00000636228 ADPGKQ9BRR6 497 aa17.81■□□□□ 0.44
CLN3-246ENST00000636228 RPP25Q9BUL9 199 aaKnown RBP17.81■□□□□ 0.44
CLN3-246ENST00000636228 FOXP1Q9H334 677 aaPredicted RBP17.81■□□□□ 0.44
CLN3-246ENST00000636228 KIAA1024Q9UPX6 916 aa17.81■□□□□ 0.44
CLN3-246ENST00000636228 PLXNA3P51805 1871 aa17.81■□□□□ 0.44
CLN3-246ENST00000636228 ZMYM2Q9UBW7 1377 aa17.8■□□□□ 0.44
CLN3-246ENST00000636228 PAPLNO95428 1278 aa17.8■□□□□ 0.44
CLN3-246ENST00000636228 CREMQ03060 361 aa17.8■□□□□ 0.44
CLN3-246ENST00000636228 GNL2Q13823 731 aaKnown RBP17.8■□□□□ 0.44
CLN3-246ENST00000636228 CCDC105Q8IYK2 499 aa17.8■□□□□ 0.44
CLN3-246ENST00000636228 GPR65Q8IYL9 337 aa17.8■□□□□ 0.44
CLN3-246ENST00000636228 DTWD2Q8NBA8 298 aa17.8■□□□□ 0.44
CLN3-246ENST00000636228 FBXO18Q8NFZ0 1043 aa17.8■□□□□ 0.44
CLN3-246ENST00000636228 PIK3R5Q8WYR1 880 aa17.8■□□□□ 0.44
CLN3-246ENST00000636228 GOLGA2P5Q9HBQ8 144 aa17.8■□□□□ 0.44
CLN3-246ENST00000636228 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP17.8■□□□□ 0.44
CLN3-246ENST00000636228 WNT16Q9UBV4 365 aa17.8■□□□□ 0.44
CLN3-246ENST00000636228 LRWD1Q9UFC0 647 aa17.8■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms