RNA–Protein interactions for RNA: ENST00000625662.2

CHD2-205, Transcript of chromodomain helicase DNA binding protein 2, human

TSL 5

Gene CHD2, Length 5,127 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD2-205	ENST00000625662	INTS2	Q9H0H0	1204 aa	Known RBP	12.5	□□□□□ -0.41
CHD2-205	ENST00000625662	IP6K2	Q9UHH9	426 aa		12.5	□□□□□ -0.41
CHD2-205	ENST00000625662	TJP3	O95049	919 aa		12.5	□□□□□ -0.41
CHD2-205	ENST00000625662	PRKAR2A	P13861	404 aa	Known RBP	12.5	□□□□□ -0.41
CHD2-205	ENST00000625662	IGFBP4	P22692	258 aa		12.5	□□□□□ -0.41
CHD2-205	ENST00000625662	MORC4	Q8TE76	937 aa		12.5	□□□□□ -0.41
CHD2-205	ENST00000625662	SPON2	Q9BUD6	331 aa		12.5	□□□□□ -0.41
CHD2-205	ENST00000625662	NT5C1A	Q9BXI3	368 aa		12.5	□□□□□ -0.41
CHD2-205	ENST00000625662	DDX56	Q9NY93	547 aa	Known RBP	12.5	□□□□□ -0.41
CHD2-205	ENST00000625662	TBKBP1	A7MCY6	615 aa		12.5	□□□□□ -0.41
CHD2-205	ENST00000625662	RNASEH1	O60930	286 aa	Known RBP	12.5	□□□□□ -0.41
CHD2-205	ENST00000625662	TH	P07101	528 aa		12.5	□□□□□ -0.41
CHD2-205	ENST00000625662	SRRM1	Q8IYB3	904 aa	Known RBP	12.5	□□□□□ -0.41
CHD2-205	ENST00000625662	SKA1	Q96BD8	255 aa		12.5	□□□□□ -0.41
CHD2-205	ENST00000625662	MIF4GD	A9UHW6	222 aa	Known RBP	12.5	□□□□□ -0.41
CHD2-205	ENST00000625662	P4HA2	O15460	535 aa		12.5	□□□□□ -0.41
CHD2-205	ENST00000625662	GSTA1	P08263	222 aa		12.5	□□□□□ -0.41
CHD2-205	ENST00000625662	GSTA2	P09210	222 aa		12.5	□□□□□ -0.41
CHD2-205	ENST00000625662	PPM1A	P35813	382 aa		12.5	□□□□□ -0.41
CHD2-205	ENST00000625662	IRX5	P78411	483 aa	Predicted RBP	12.5	□□□□□ -0.41
CHD2-205	ENST00000625662	ZWILCH	Q9H900	591 aa		12.5	□□□□□ -0.41
CHD2-205	ENST00000625662	RHOXF2B	P0C7M4	288 aa		12.49	□□□□□ -0.41
CHD2-205	ENST00000625662		Q4G0T1	1027 aa		12.49	□□□□□ -0.41
CHD2-205	ENST00000625662	ZNF394	Q53GI3	561 aa		12.49	□□□□□ -0.41
CHD2-205	ENST00000625662	TBC1D19	Q8N5T2	526 aa		12.49	□□□□□ -0.41
CHD2-205	ENST00000625662	PBK	Q96KB5	322 aa		12.49	□□□□□ -0.41
CHD2-205	ENST00000625662	RHOXF2	Q9BQY4	288 aa		12.49	□□□□□ -0.41
CHD2-205	ENST00000625662	MFSD1	Q9H3U5	465 aa		12.49	□□□□□ -0.41
CHD2-205	ENST00000625662	EVA1B	Q9NVM1	165 aa		12.49	□□□□□ -0.41
CHD2-205	ENST00000625662	CDO1	Q16878	200 aa		12.49	□□□□□ -0.41
CHD2-205	ENST00000625662	TCP11X2	Q5H9J9	407 aa		12.49	□□□□□ -0.41
CHD2-205	ENST00000625662	CYP4F22	Q6NT55	531 aa		12.49	□□□□□ -0.41
CHD2-205	ENST00000625662	ZNF557	Q8N988	423 aa	Predicted RBP	12.49	□□□□□ -0.41
CHD2-205	ENST00000625662	SLC4A9	Q96Q91	983 aa		12.49	□□□□□ -0.41
CHD2-205	ENST00000625662	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	12.49	□□□□□ -0.41
CHD2-205	ENST00000625662	KIF3C	O14782	793 aa		12.49	□□□□□ -0.41
CHD2-205	ENST00000625662	SOX5	P35711	763 aa		12.49	□□□□□ -0.41
CHD2-205	ENST00000625662	KPNA1	P52294	538 aa	Predicted RBP	12.49	□□□□□ -0.41
CHD2-205	ENST00000625662	CASP7	P55210	303 aa		12.49	□□□□□ -0.41
CHD2-205	ENST00000625662	ANO4	Q32M45	955 aa		12.49	□□□□□ -0.41
CHD2-205	ENST00000625662	MKNK1	Q9BUB5	465 aa		12.49	□□□□□ -0.41
CHD2-205	ENST00000625662	FSD1L	Q9BXM9	530 aa		12.49	□□□□□ -0.41
CHD2-205	ENST00000625662	KLC2	Q9H0B6	622 aa		12.49	□□□□□ -0.41
CHD2-205	ENST00000625662	PLEKHA5	Q9HAU0	1116 aa		12.49	□□□□□ -0.41
CHD2-205	ENST00000625662	TRPM5	Q9NZQ8	1165 aa		12.49	□□□□□ -0.41
CHD2-205	ENST00000625662	FBXL21	Q9UKT6	434 aa		12.49	□□□□□ -0.41
CHD2-205	ENST00000625662	OGT	O15294	1046 aa		12.49	□□□□□ -0.41
CHD2-205	ENST00000625662	FARP2	O94887	1054 aa	Predicted RBP	12.49	□□□□□ -0.41
CHD2-205	ENST00000625662	GART	P22102	1010 aa		12.49	□□□□□ -0.41
CHD2-205	ENST00000625662	YWHAG	P61981	247 aa	Known RBP eCLIP	12.49	□□□□□ -0.41
CHD2-205	ENST00000625662	MPZL3	Q6UWV2	235 aa		12.49	□□□□□ -0.41
CHD2-205	ENST00000625662	C4orf19	Q8IY42	314 aa		12.49	□□□□□ -0.41
CHD2-205	ENST00000625662	KLRG1	Q96E93	195 aa		12.49	□□□□□ -0.41
CHD2-205	ENST00000625662	SLC7A5P2	Q9GIP4	190 aa		12.49	□□□□□ -0.41
CHD2-205	ENST00000625662	KIAA1257	Q9ULG3	409 aa		12.49	□□□□□ -0.41
CHD2-205	ENST00000625662	PSMD3	O43242	534 aa		12.48	□□□□□ -0.41
CHD2-205	ENST00000625662	ZC3H11A	O75152	810 aa	Known RBP eCLIP	12.48	□□□□□ -0.41	6e-7	■■■■□ 22.8
CHD2-205	ENST00000625662	LHX1	P48742	406 aa		12.48	□□□□□ -0.41
CHD2-205	ENST00000625662	ADK	P55263	362 aa	Known RBP	12.48	□□□□□ -0.41
CHD2-205	ENST00000625662	PGM5	Q15124	567 aa		12.48	□□□□□ -0.41
CHD2-205	ENST00000625662	PAN2	Q504Q3	1202 aa	Known RBP	12.48	□□□□□ -0.41
CHD2-205	ENST00000625662	HDX	Q7Z353	690 aa		12.48	□□□□□ -0.41
CHD2-205	ENST00000625662	NOP9	Q86U38	636 aa	Known RBP	12.48	□□□□□ -0.41
CHD2-205	ENST00000625662	KLHL8	Q9P2G9	620 aa	Predicted RBP	12.48	□□□□□ -0.41
CHD2-205	ENST00000625662	UXT	Q9UBK9	157 aa	Predicted RBP	12.48	□□□□□ -0.41
CHD2-205	ENST00000625662	IFNAR2	P48551	515 aa		12.48	□□□□□ -0.41
CHD2-205	ENST00000625662	RWDD2B	P57060	319 aa		12.48	□□□□□ -0.41
CHD2-205	ENST00000625662	KCNH2	Q12809	1159 aa		12.48	□□□□□ -0.41
CHD2-205	ENST00000625662	NCOA4	Q13772	614 aa		12.48	□□□□□ -0.41
CHD2-205	ENST00000625662	CTXN3	Q4LDR2	81 aa		12.48	□□□□□ -0.41
CHD2-205	ENST00000625662	ATP6V1E2	Q96A05	226 aa		12.48	□□□□□ -0.41
CHD2-205	ENST00000625662	CNOT8	Q9UFF9	292 aa	Known RBP	12.48	□□□□□ -0.41
CHD2-205	ENST00000625662	AK9	Q5TCS8	1911 aa		12.48	□□□□□ -0.41
CHD2-205	ENST00000625662	NRCAM	Q92823	1304 aa		12.48	□□□□□ -0.41
CHD2-205	ENST00000625662	MOCS2	O96007	188 aa	Predicted RBP	12.48	□□□□□ -0.41
CHD2-205	ENST00000625662	SLC11A2	P49281	568 aa		12.48	□□□□□ -0.41
CHD2-205	ENST00000625662	CDKL3	Q8IVW4	592 aa	Predicted RBP	12.48	□□□□□ -0.41
CHD2-205	ENST00000625662	ELOA2	Q8IYF1	753 aa	Predicted RBP	12.48	□□□□□ -0.41
CHD2-205	ENST00000625662	KRT222	Q8N1A0	295 aa		12.48	□□□□□ -0.41
CHD2-205	ENST00000625662	USP38	Q8NB14	1042 aa		12.48	□□□□□ -0.41
CHD2-205	ENST00000625662	FAM200B	P0CF97	657 aa		12.48	□□□□□ -0.41
CHD2-205	ENST00000625662	PDE1B	Q01064	536 aa		12.48	□□□□□ -0.41
CHD2-205	ENST00000625662	FIBCD1	Q8N539	461 aa		12.48	□□□□□ -0.41
CHD2-205	ENST00000625662	ATP6V0D2	Q8N8Y2	350 aa		12.48	□□□□□ -0.41
CHD2-205	ENST00000625662	C7orf25	Q9BPX7	421 aa		12.48	□□□□□ -0.41
CHD2-205	ENST00000625662	UNC45A	Q9H3U1	944 aa		12.48	□□□□□ -0.41
CHD2-205	ENST00000625662	STN1	Q9H668	368 aa	Known RBP	12.48	□□□□□ -0.41
CHD2-205	ENST00000625662	AGO4	Q9HCK5	861 aa	Known RBP	12.48	□□□□□ -0.41
CHD2-205	ENST00000625662	ZNF541	Q9H0D2	1346 aa		12.47	□□□□□ -0.41
CHD2-205	ENST00000625662	IFT172	Q9UG01	1749 aa		12.47	□□□□□ -0.41
CHD2-205	ENST00000625662	SLC4A1	P02730	911 aa		12.47	□□□□□ -0.41
CHD2-205	ENST00000625662	KLRC2	P26717	231 aa		12.47	□□□□□ -0.41
CHD2-205	ENST00000625662	CDC25B	P30305	580 aa		12.47	□□□□□ -0.41
CHD2-205	ENST00000625662	GPC5	P78333	572 aa		12.47	□□□□□ -0.41
CHD2-205	ENST00000625662	EFHC1	Q5JVL4	640 aa		12.47	□□□□□ -0.41
CHD2-205	ENST00000625662	CCDC149	Q6ZUS6	474 aa		12.47	□□□□□ -0.41
CHD2-205	ENST00000625662	C10orf67	Q8IYJ2	551 aa		12.47	□□□□□ -0.41
CHD2-205	ENST00000625662	REPS2	Q8NFH8	660 aa		12.47	□□□□□ -0.41
CHD2-205	ENST00000625662	MKL1	Q969V6	931 aa		12.47	□□□□□ -0.41
CHD2-205	ENST00000625662	RIOX1	Q9H6W3	641 aa		12.47	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 89.4 ms