RNA–Protein interactions for RNA: ENST00000623985.3

LINC00643-206, long intergenic non-protein coding RNA 643, humanhuman

TSL 1 (best)

Gene LINC00643, Length 864 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-206ENST00000623985 MRPL17Q9NRX2 175 aaKnown RBP16.28■□□□□ 0.2
LINC00643-206ENST00000623985 DZANK1Q9NVP4 752 aa16.28■□□□□ 0.2
LINC00643-206ENST00000623985 ODF2LQ9ULJ1 636 aa16.28■□□□□ 0.2
LINC00643-206ENST00000623985 SSX2IPQ9Y2D8 614 aa16.28■□□□□ 0.2
LINC00643-206ENST00000623985 GTF3C3Q9Y5Q9 886 aa16.28■□□□□ 0.2
LINC00643-206ENST00000623985 CLIC4Q9Y696 253 aa16.28■□□□□ 0.2
LINC00643-206ENST00000623985 DOCK8Q8NF50 2099 aa16.28■□□□□ 0.2
LINC00643-206ENST00000623985 PI4K2BG5E9Z4 385 aa16.27■□□□□ 0.2
LINC00643-206ENST00000623985 SLC16A4O15374 487 aa16.27■□□□□ 0.2
LINC00643-206ENST00000623985 STX6O43752 255 aa16.27■□□□□ 0.2
LINC00643-206ENST00000623985 THP07101 528 aa16.27■□□□□ 0.2
LINC00643-206ENST00000623985 PLCG1P19174 1290 aa16.27■□□□□ 0.2
LINC00643-206ENST00000623985 GLUD2P49448 558 aa16.27■□□□□ 0.2
LINC00643-206ENST00000623985 SMTNP53814 917 aa16.27■□□□□ 0.2
LINC00643-206ENST00000623985 CBX2Q14781 532 aaPredicted RBP16.27■□□□□ 0.2
LINC00643-206ENST00000623985 FUT10Q6P4F1 479 aa16.27■□□□□ 0.2
LINC00643-206ENST00000623985 PHF7Q9BWX1 381 aaPredicted RBP16.27■□□□□ 0.2
LINC00643-206ENST00000623985 CCSER1Q9C0I3 900 aa16.27■□□□□ 0.2
LINC00643-206ENST00000623985 CDT1Q9H211 546 aa16.27■□□□□ 0.2
LINC00643-206ENST00000623985 S1PR5Q9H228 398 aa16.27■□□□□ 0.2
LINC00643-206ENST00000623985 ZSCAN16Q9H4T2 348 aaPredicted RBP16.27■□□□□ 0.2
LINC00643-206ENST00000623985 FOXD4L1Q9NU39 408 aa16.27■□□□□ 0.2
LINC00643-206ENST00000623985 LARSQ9P2J5 1176 aaKnown RBP16.27■□□□□ 0.2
LINC00643-206ENST00000623985 ADAM28Q9UKQ2 775 aa16.27■□□□□ 0.2
LINC00643-206ENST00000623985 MTMR6Q9Y217 621 aa16.27■□□□□ 0.2
LINC00643-206ENST00000623985 GDAQ9Y2T3 454 aa16.27■□□□□ 0.2
LINC00643-206ENST00000623985 MORC2Q9Y6X9 1032 aaPredicted RBP16.27■□□□□ 0.2
LINC00643-206ENST00000623985 KMT2EQ8IZD2 1858 aa16.27■□□□□ 0.19
LINC00643-206ENST00000623985 SFI1A8K8P3 1242 aa16.26■□□□□ 0.19
LINC00643-206ENST00000623985 F8W810 466 aa16.26■□□□□ 0.19
LINC00643-206ENST00000623985 H0YCG3 227 aa16.26■□□□□ 0.19
LINC00643-206ENST00000623985 LILRB3O75022 631 aa16.26■□□□□ 0.19
LINC00643-206ENST00000623985 PROZP22891 400 aa16.26■□□□□ 0.19
LINC00643-206ENST00000623985 ITIH3Q06033 890 aa16.26■□□□□ 0.19
LINC00643-206ENST00000623985 STRN3Q13033 797 aa16.26■□□□□ 0.19
LINC00643-206ENST00000623985 HSP90AA2PQ14568 343 aaPredicted RBP16.26■□□□□ 0.19
LINC00643-206ENST00000623985 KARSQ15046 597 aaKnown RBP16.26■□□□□ 0.19
LINC00643-206ENST00000623985 NAB2Q15742 525 aa16.26■□□□□ 0.19
LINC00643-206ENST00000623985 ARSHQ5FYA8 562 aa16.26■□□□□ 0.19
LINC00643-206ENST00000623985 GPBP1Q86WP2 473 aa16.26■□□□□ 0.19
LINC00643-206ENST00000623985 HSCBQ8IWL3 235 aa16.26■□□□□ 0.19
LINC00643-206ENST00000623985 TMEM161BQ8NDZ6 487 aa16.26■□□□□ 0.19
LINC00643-206ENST00000623985 LRRC15Q8TF66 581 aa16.26■□□□□ 0.19
LINC00643-206ENST00000623985 SLC22A17Q8WUG5 538 aa16.26■□□□□ 0.19
LINC00643-206ENST00000623985 RAD54LQ92698 747 aa16.26■□□□□ 0.19
LINC00643-206ENST00000623985 REEP2Q9BRK0 252 aa16.26■□□□□ 0.19
LINC00643-206ENST00000623985 CCDC94Q9BW85 323 aaPredicted RBP16.26■□□□□ 0.19
LINC00643-206ENST00000623985 EPHX3Q9H6B9 360 aa16.26■□□□□ 0.19
LINC00643-206ENST00000623985 PTPRHQ9HD43 1115 aa16.26■□□□□ 0.19
LINC00643-206ENST00000623985 BLOC1S4Q9NUP1 217 aa16.26■□□□□ 0.19
LINC00643-206ENST00000623985 FBXO2Q9UK22 296 aaPredicted RBP16.26■□□□□ 0.19
LINC00643-206ENST00000623985 SF3B1O75533 1304 aaKnown RBP eCLIP16.25■□□□□ 0.19
LINC00643-206ENST00000623985 DOCK6Q96HP0 2047 aa16.25■□□□□ 0.19
LINC00643-206ENST00000623985 CASTOR2A6NHX0 329 aa16.25■□□□□ 0.19
LINC00643-206ENST00000623985 LOC730098B7Z3J9 87 aa16.25■□□□□ 0.19
LINC00643-206ENST00000623985 BRD1O95696 1058 aa16.25■□□□□ 0.19
LINC00643-206ENST00000623985 ADH1AP07327 375 aa16.25■□□□□ 0.19
LINC00643-206ENST00000623985 CNPP09543 421 aaKnown RBP16.25■□□□□ 0.19
LINC00643-206ENST00000623985 MAPTP10636 758 aaKnown RBP16.25■□□□□ 0.19
LINC00643-206ENST00000623985 ALADP13716 330 aa16.25■□□□□ 0.19
LINC00643-206ENST00000623985 EPCAMP16422 314 aa16.25■□□□□ 0.19
LINC00643-206ENST00000623985 SCP2P22307 547 aa16.25■□□□□ 0.19
LINC00643-206ENST00000623985 GRM5P41594 1212 aa16.25■□□□□ 0.19
LINC00643-206ENST00000623985 CLCN4P51793 760 aa16.25■□□□□ 0.19
LINC00643-206ENST00000623985 NCKAP1LP55160 1127 aa16.25■□□□□ 0.19
LINC00643-206ENST00000623985 DSG1Q02413 1049 aa16.25■□□□□ 0.19
LINC00643-206ENST00000623985 CES5AQ6NT32 575 aa16.25■□□□□ 0.19
LINC00643-206ENST00000623985 MPZL3Q6UWV2 235 aa16.25■□□□□ 0.19
LINC00643-206ENST00000623985 GPR65Q8IYL9 337 aa16.25■□□□□ 0.19
LINC00643-206ENST00000623985 LARP4BQ92615 738 aaKnown RBP16.25■□□□□ 0.19
LINC00643-206ENST00000623985 KCNN1Q92952 543 aa16.25■□□□□ 0.19
LINC00643-206ENST00000623985 NECTIN4Q96NY8 510 aa16.25■□□□□ 0.19
LINC00643-206ENST00000623985 KLHL5Q96PQ7 755 aa16.25■□□□□ 0.19
LINC00643-206ENST00000623985 TARS2Q9BW92 718 aaKnown RBP16.25■□□□□ 0.19
LINC00643-206ENST00000623985 TOPORSQ9NS56 1045 aaPredicted RBP16.25■□□□□ 0.19
LINC00643-206ENST00000623985 SRPRBQ9Y5M8 271 aaKnown RBP16.25■□□□□ 0.19
LINC00643-206ENST00000623985 NPHP3-ACAD11A0A0J9YXS1 232 aa16.24■□□□□ 0.19
LINC00643-206ENST00000623985 C2CD2LO14523 706 aa16.24■□□□□ 0.19
LINC00643-206ENST00000623985 ABLIM1O14639 778 aa16.24■□□□□ 0.19
LINC00643-206ENST00000623985 DCXO43602 365 aa16.24■□□□□ 0.19
LINC00643-206ENST00000623985 KIF4AO95239 1232 aa16.24■□□□□ 0.19
LINC00643-206ENST00000623985 MCF2P10911 925 aa16.24■□□□□ 0.19
LINC00643-206ENST00000623985 KLRC2P26717 231 aa16.24■□□□□ 0.19
LINC00643-206ENST00000623985 MARCKSP29966 332 aaPredicted RBP16.24■□□□□ 0.19
LINC00643-206ENST00000623985 TXLNAP40222 546 aa16.24■□□□□ 0.19
LINC00643-206ENST00000623985 ZNF131P52739 623 aa16.24■□□□□ 0.19
LINC00643-206ENST00000623985 YARSP54577 528 aaKnown RBP16.24■□□□□ 0.19
LINC00643-206ENST00000623985 CACNB1Q02641 598 aaPredicted RBP16.24■□□□□ 0.19
LINC00643-206ENST00000623985 CREMQ03060 361 aa16.24■□□□□ 0.19
LINC00643-206ENST00000623985 MCM6Q14566 821 aa16.24■□□□□ 0.19
LINC00643-206ENST00000623985 NOLC1Q14978 699 aaKnown RBP eCLIP16.24■□□□□ 0.19
LINC00643-206ENST00000623985 USP41Q3LFD5 358 aa16.24■□□□□ 0.19
LINC00643-206ENST00000623985 KIAA0319Q5VV43 1072 aa16.24■□□□□ 0.19
LINC00643-206ENST00000623985 FAM173BQ6P4H8 233 aa16.24■□□□□ 0.19
LINC00643-206ENST00000623985 ZPBP2Q6X784 338 aa16.24■□□□□ 0.19
LINC00643-206ENST00000623985 CEP120Q8N960 986 aa16.24■□□□□ 0.19
LINC00643-206ENST00000623985 PPP1R10Q96QC0 940 aaKnown RBP16.24■□□□□ 0.19
LINC00643-206ENST00000623985 PAAF1Q9BRP4 392 aa16.24■□□□□ 0.19
LINC00643-206ENST00000623985 APOL5Q9BWW9 433 aa16.24■□□□□ 0.19
LINC00643-206ENST00000623985 ADAM7Q9H2U9 754 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms