RNA–Protein interactions for RNA: ENST00000622629.4

MSH6-215, Transcript of mutS homolog 6, humanhuman

TSL 5 BASIC

Gene MSH6, Length 4,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-215ENST00000622629 FRMD3A2A2Y4 597 aa13.69□□□□□ -0.22
MSH6-215ENST00000622629 WDR46O15213 610 aaKnown RBP13.69□□□□□ -0.22
MSH6-215ENST00000622629 TJP3O95049 919 aa13.69□□□□□ -0.22
MSH6-215ENST00000622629 SYF2O95926 243 aaKnown RBP13.69□□□□□ -0.22
MSH6-215ENST00000622629 PTGISQ16647 500 aa13.69□□□□□ -0.22
MSH6-215ENST00000622629 LRIG3Q6UXM1 1119 aa13.69□□□□□ -0.22
MSH6-215ENST00000622629 RHOT1Q8IXI2 618 aa13.69□□□□□ -0.22
MSH6-215ENST00000622629 PPFIBP2Q8ND30 876 aa13.69□□□□□ -0.22
MSH6-215ENST00000622629 KCNMB3Q9NPA1 279 aa13.69□□□□□ -0.22
MSH6-215ENST00000622629 ZNF302Q9NR11 478 aa13.69□□□□□ -0.22
MSH6-215ENST00000622629 PPP1R9AQ9ULJ8 1098 aa13.69□□□□□ -0.22
MSH6-215ENST00000622629 MYH2Q9UKX2 1941 aa13.69□□□□□ -0.22
MSH6-215ENST00000622629 TISP43B9A030 160 aa13.69□□□□□ -0.22
MSH6-215ENST00000622629 GUCY2CP25092 1073 aa13.69□□□□□ -0.22
MSH6-215ENST00000622629 RASSF2P50749 326 aa13.69□□□□□ -0.22
MSH6-215ENST00000622629 MTM1Q13496 603 aa13.69□□□□□ -0.22
MSH6-215ENST00000622629 OR6B2Q6IFH4 312 aa13.69□□□□□ -0.22
MSH6-215ENST00000622629 C15orf52Q6ZUT6 534 aaKnown RBP13.69□□□□□ -0.22
MSH6-215ENST00000622629 FAM198AQ9UFP1 575 aa13.69□□□□□ -0.22
MSH6-215ENST00000622629 FANCGO15287 622 aa13.69□□□□□ -0.22
MSH6-215ENST00000622629 SLC8A1P32418 973 aa13.69□□□□□ -0.22
MSH6-215ENST00000622629 SESN3P58005 492 aa13.69□□□□□ -0.22
MSH6-215ENST00000622629 GPS1Q13098 491 aa13.69□□□□□ -0.22
MSH6-215ENST00000622629 MAPK6Q16659 721 aa13.69□□□□□ -0.22
MSH6-215ENST00000622629 TKFCQ3LXA3 575 aa13.69□□□□□ -0.22
MSH6-215ENST00000622629 IZUMO3Q5VZ72 239 aa13.69□□□□□ -0.22
MSH6-215ENST00000622629 ZNF449Q6P9G9 518 aa13.69□□□□□ -0.22
MSH6-215ENST00000622629 ACTRT1Q8TDG2 376 aa13.69□□□□□ -0.22
MSH6-215ENST00000622629 HSPH1Q92598 858 aa13.69□□□□□ -0.22
MSH6-215ENST00000622629 ATG4CQ96DT6 458 aa13.69□□□□□ -0.22
MSH6-215ENST00000622629 NGRNQ9NPE2 291 aaKnown RBP13.69□□□□□ -0.22
MSH6-215ENST00000622629 UVRAGQ9P2Y5 699 aa13.69□□□□□ -0.22
MSH6-215ENST00000622629 MCF2LO15068 1137 aa13.68□□□□□ -0.22
MSH6-215ENST00000622629 DGAT1O75907 488 aa13.68□□□□□ -0.22
MSH6-215ENST00000622629 HNRNPH3P31942 346 aaKnown RBP13.68□□□□□ -0.22
MSH6-215ENST00000622629 MSH2P43246 934 aa13.68□□□□□ -0.22
MSH6-215ENST00000622629 KYNUQ16719 465 aa13.68□□□□□ -0.22
MSH6-215ENST00000622629 SUPT20HL1Q3ZLR7 823 aa13.68□□□□□ -0.22
MSH6-215ENST00000622629 CBWD6Q4V339 395 aa13.68□□□□□ -0.22
MSH6-215ENST00000622629 CBWD3Q5JTY5 395 aa13.68□□□□□ -0.22
MSH6-215ENST00000622629 CBWD5Q5RIA9 395 aa13.68□□□□□ -0.22
MSH6-215ENST00000622629 AMIGO3Q86WK7 504 aa13.68□□□□□ -0.22
MSH6-215ENST00000622629 GMCL1P1Q8NEA9 526 aa13.68□□□□□ -0.22
MSH6-215ENST00000622629 MICAL1Q8TDZ2 1067 aa13.68□□□□□ -0.22
MSH6-215ENST00000622629 EFCC1Q9HA90 598 aa13.68□□□□□ -0.22
MSH6-215ENST00000622629 GINM1Q9NU53 330 aa13.68□□□□□ -0.22
MSH6-215ENST00000622629 ARFGEF2Q9Y6D5 1785 aa13.68□□□□□ -0.22
MSH6-215ENST00000622629 NDC80O14777 642 aa13.68□□□□□ -0.22
MSH6-215ENST00000622629 MAPK7Q13164 816 aa13.68□□□□□ -0.22
MSH6-215ENST00000622629 TFDP1Q14186 410 aa13.68□□□□□ -0.22
MSH6-215ENST00000622629 TRIM68Q6AZZ1 485 aa13.68□□□□□ -0.22
MSH6-215ENST00000622629 DARS2Q6PI48 645 aaKnown RBP13.68□□□□□ -0.22
MSH6-215ENST00000622629 CENPUQ71F23 418 aa13.68□□□□□ -0.22
MSH6-215ENST00000622629 MORC4Q8TE76 937 aa13.68□□□□□ -0.22
MSH6-215ENST00000622629 CAVIN3Q969G5 261 aa13.68□□□□□ -0.22
MSH6-215ENST00000622629 RNF34Q969K3 372 aa13.68□□□□□ -0.22
MSH6-215ENST00000622629 FAM149B1Q96BN6 582 aa13.68□□□□□ -0.22
MSH6-215ENST00000622629 CYFIP2Q96F07 1278 aa13.68□□□□□ -0.22
MSH6-215ENST00000622629 PRMT1Q99873 361 aaKnown RBP13.68□□□□□ -0.22
MSH6-215ENST00000622629 CAP2P40123 477 aa13.68□□□□□ -0.22
MSH6-215ENST00000622629 AARSP49588 968 aaKnown RBP eCLIP13.68□□□□□ -0.228e-6■■■■■ 52.4
MSH6-215ENST00000622629 DACT2Q5SW24 774 aa13.68□□□□□ -0.22
MSH6-215ENST00000622629 PDIK1LQ8N165 341 aa13.68□□□□□ -0.22
MSH6-215ENST00000622629 LPAR1Q92633 364 aa13.68□□□□□ -0.22
MSH6-215ENST00000622629 HEXIM2Q96MH2 286 aaKnown RBP13.68□□□□□ -0.22
MSH6-215ENST00000622629 SOX10P56693 466 aa13.68□□□□□ -0.22
MSH6-215ENST00000622629 SNX16P57768 344 aa13.68□□□□□ -0.22
MSH6-215ENST00000622629 ZNF667Q5HYK9 610 aa13.68□□□□□ -0.22
MSH6-215ENST00000622629 ENOSF1Q7L5Y1 443 aa13.68□□□□□ -0.22
MSH6-215ENST00000622629 MAP7D3Q8IWC1 876 aa13.68□□□□□ -0.22
MSH6-215ENST00000622629 MYCBPAPQ8TBZ2 947 aa13.68□□□□□ -0.22
MSH6-215ENST00000622629 ATG4AQ8WYN0 398 aa13.68□□□□□ -0.22
MSH6-215ENST00000622629 SNF8Q96H20 258 aa13.68□□□□□ -0.22
MSH6-215ENST00000622629 TOPORSQ9NS56 1045 aaPredicted RBP13.68□□□□□ -0.22
MSH6-215ENST00000622629 SALL4Q9UJQ4 1053 aa13.68□□□□□ -0.22
MSH6-215ENST00000622629 PCDHGC5Q9Y5F6 944 aa13.68□□□□□ -0.22
MSH6-215ENST00000622629 STRCP1A6NGW2 1772 aa13.68□□□□□ -0.22
MSH6-215ENST00000622629 SPDYE2BA6NHP3 402 aa13.67□□□□□ -0.22
MSH6-215ENST00000622629 GGPS1O95749 300 aa13.67□□□□□ -0.22
MSH6-215ENST00000622629 FAM107AO95990 144 aa13.67□□□□□ -0.22
MSH6-215ENST00000622629 SPDYE6P0CI01 402 aa13.67□□□□□ -0.22
MSH6-215ENST00000622629 ZNF699Q32M78 642 aa13.67□□□□□ -0.22
MSH6-215ENST00000622629 ARSHQ5FYA8 562 aa13.67□□□□□ -0.22
MSH6-215ENST00000622629 APBB1IPQ7Z5R6 666 aaPredicted RBP13.67□□□□□ -0.22
MSH6-215ENST00000622629 DHX38Q92620 1227 aaKnown RBP13.67□□□□□ -0.22
MSH6-215ENST00000622629 RBM41Q96IZ5 413 aaKnown RBP13.67□□□□□ -0.22
MSH6-215ENST00000622629 ACAD9Q9H845 621 aa13.67□□□□□ -0.22
MSH6-215ENST00000622629 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.67□□□□□ -0.22
MSH6-215ENST00000622629 TLR2O60603 784 aa13.67□□□□□ -0.22
MSH6-215ENST00000622629 TRADDQ15628 312 aa13.67□□□□□ -0.22
MSH6-215ENST00000622629 SEZ6Q53EL9 994 aa13.67□□□□□ -0.22
MSH6-215ENST00000622629 EPM2AIP1Q7L775 607 aaPredicted RBP13.67□□□□□ -0.22
MSH6-215ENST00000622629 TAS1R2Q8TE23 839 aa13.67□□□□□ -0.22
MSH6-215ENST00000622629 XPO6Q96QU8 1125 aaKnown RBP13.67□□□□□ -0.22
MSH6-215ENST00000622629 ZSWIM1Q9BR11 485 aa13.67□□□□□ -0.22
MSH6-215ENST00000622629 PDGFDQ9GZP0 370 aaPredicted RBP13.67□□□□□ -0.22
MSH6-215ENST00000622629 RPF1Q9H9Y2 349 aaKnown RBP13.67□□□□□ -0.22
MSH6-215ENST00000622629 TMEM8AQ9HCN3 771 aa13.67□□□□□ -0.22
MSH6-215ENST00000622629 HOXC10Q9NYD6 342 aa13.67□□□□□ -0.22
MSH6-215ENST00000622629 TBX20Q9UMR3 447 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms