RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 ARHGEF26Q96DR7 871 aa11.37□□□□□ -0.59
VPS11-208ENST00000621676 RNF39Q9H2S5 420 aa11.37□□□□□ -0.59
VPS11-208ENST00000621676 DHX33Q9H6R0 707 aaKnown RBP11.37□□□□□ -0.59
VPS11-208ENST00000621676 RAB20Q9NX57 234 aa11.37□□□□□ -0.59
VPS11-208ENST00000621676 DDX3XO00571 662 aaKnown RBP eCLIP11.36□□□□□ -0.599e-7■□□□□ 10
VPS11-208ENST00000621676 FTLP02792 175 aaPredicted RBP11.36□□□□□ -0.59
VPS11-208ENST00000621676 CCND3P30281 292 aaPredicted RBP11.36□□□□□ -0.59
VPS11-208ENST00000621676 ZNF792Q3KQV3 632 aa11.36□□□□□ -0.59
VPS11-208ENST00000621676 ATF7IP2Q5U623 682 aa11.36□□□□□ -0.59
VPS11-208ENST00000621676 CCDC50Q8IVM0 306 aa11.36□□□□□ -0.59
VPS11-208ENST00000621676 CCDC33Q8N5R6 958 aa11.36□□□□□ -0.59
VPS11-208ENST00000621676 LRRN4Q8WUT4 740 aa11.36□□□□□ -0.59
VPS11-208ENST00000621676 KREMEN1Q96MU8 473 aa11.36□□□□□ -0.59
VPS11-208ENST00000621676 NAPGQ99747 312 aaPredicted RBP11.36□□□□□ -0.59
VPS11-208ENST00000621676 EIF2AQ9BY44 585 aaKnown RBP11.36□□□□□ -0.59
VPS11-208ENST00000621676 AP5M1Q9H0R1 490 aa11.36□□□□□ -0.59
VPS11-208ENST00000621676 GANQ9H2C0 597 aa11.36□□□□□ -0.59
VPS11-208ENST00000621676 ZFYVE28Q9HCC9 887 aa11.36□□□□□ -0.59
VPS11-208ENST00000621676 SNTG2Q9NY99 539 aa11.36□□□□□ -0.59
VPS11-208ENST00000621676 APEX2Q9UBZ4 518 aa11.36□□□□□ -0.59
VPS11-208ENST00000621676 IGSF9BQ9UPX0 1349 aa11.36□□□□□ -0.59
VPS11-208ENST00000621676 DNAJC25-GNG10A0A024R161 153 aa11.36□□□□□ -0.59
VPS11-208ENST00000621676 SYNJ2BP-COX16A0A087WUM0 186 aa11.36□□□□□ -0.59
VPS11-208ENST00000621676 I3L4J1 428 aa11.36□□□□□ -0.59
VPS11-208ENST00000621676 CEP104O60308 925 aa11.36□□□□□ -0.59
VPS11-208ENST00000621676 PPP1R2P41236 205 aa11.36□□□□□ -0.59
VPS11-208ENST00000621676 GALCP54803 685 aa11.36□□□□□ -0.59
VPS11-208ENST00000621676 TDRD10Q5VZ19 366 aaKnown RBP11.36□□□□□ -0.59
VPS11-208ENST00000621676 FAM117BQ6P1L5 589 aa11.36□□□□□ -0.59
VPS11-208ENST00000621676 INTS8Q75QN2 995 aaKnown RBP11.36□□□□□ -0.59
VPS11-208ENST00000621676 NIPA1Q7RTP0 329 aa11.36□□□□□ -0.59
VPS11-208ENST00000621676 PDCL2Q8N4E4 241 aa11.36□□□□□ -0.59
VPS11-208ENST00000621676 RETREG2Q8NC44 543 aa11.36□□□□□ -0.59
VPS11-208ENST00000621676 NEK9Q8TD19 979 aa11.36□□□□□ -0.59
VPS11-208ENST00000621676 TMEM40Q8WWA1 233 aa11.36□□□□□ -0.59
VPS11-208ENST00000621676 CAPNS2Q96L46 248 aa11.36□□□□□ -0.59
VPS11-208ENST00000621676 ZFP42Q96MM3 310 aa11.36□□□□□ -0.59
VPS11-208ENST00000621676 MAP7D2Q96T17 732 aa11.36□□□□□ -0.59
VPS11-208ENST00000621676 SENP7Q9BQF6 1050 aa11.36□□□□□ -0.59
VPS11-208ENST00000621676 C11orf70Q9BRQ4 267 aa11.36□□□□□ -0.59
VPS11-208ENST00000621676 SIX2Q9NPC8 291 aa11.36□□□□□ -0.59
VPS11-208ENST00000621676 COX16Q9P0S2 106 aa11.36□□□□□ -0.59
VPS11-208ENST00000621676 ZBTB42B2RXF5 422 aa11.35□□□□□ -0.59
VPS11-208ENST00000621676 NPTXRO95502 500 aa11.35□□□□□ -0.59
VPS11-208ENST00000621676 NFICP08651 508 aa11.35□□□□□ -0.59
VPS11-208ENST00000621676 FAM110CQ1W6H9 321 aa11.35□□□□□ -0.59
VPS11-208ENST00000621676 WDR44Q5JSH3 913 aa11.35□□□□□ -0.59
VPS11-208ENST00000621676 KRT39Q6A163 491 aa11.35□□□□□ -0.59
VPS11-208ENST00000621676 ABHD16BQ9H3Z7 469 aa11.35□□□□□ -0.59
VPS11-208ENST00000621676 SEL1LQ9UBV2 794 aa11.35□□□□□ -0.59
VPS11-208ENST00000621676 MORC2Q9Y6X9 1032 aaPredicted RBP11.35□□□□□ -0.59
VPS11-208ENST00000621676 PDE2AO00408 941 aaPredicted RBP11.35□□□□□ -0.59
VPS11-208ENST00000621676 PPEF2O14830 753 aa11.35□□□□□ -0.59
VPS11-208ENST00000621676 MAP3K6O95382 1288 aa11.35□□□□□ -0.59
VPS11-208ENST00000621676 ITGB3P05106 788 aa11.35□□□□□ -0.59
VPS11-208ENST00000621676 ARF4P18085 180 aaPredicted RBP11.35□□□□□ -0.59
VPS11-208ENST00000621676 VPS41P49754 854 aa11.35□□□□□ -0.59
VPS11-208ENST00000621676 CYP24A1Q07973 514 aa11.35□□□□□ -0.59
VPS11-208ENST00000621676 DEFB115Q30KQ5 88 aa11.35□□□□□ -0.59
VPS11-208ENST00000621676 TWF2Q6IBS0 349 aaKnown RBP11.35□□□□□ -0.59
VPS11-208ENST00000621676 IRF2BP2Q7Z5L9 587 aa11.35□□□□□ -0.59
VPS11-208ENST00000621676 MAP4K3Q8IVH8 894 aa11.35□□□□□ -0.59
VPS11-208ENST00000621676 FBXL13Q8NEE6 735 aa11.35□□□□□ -0.59
VPS11-208ENST00000621676 HDAC7Q8WUI4 952 aa11.35□□□□□ -0.59
VPS11-208ENST00000621676 IFT81Q8WYA0 676 aa11.35□□□□□ -0.59
VPS11-208ENST00000621676 TRIB2Q92519 343 aa11.35□□□□□ -0.59
VPS11-208ENST00000621676 NT5C1BQ96P26 610 aa11.35□□□□□ -0.59
VPS11-208ENST00000621676 FAM49BQ9NUQ9 324 aa11.35□□□□□ -0.59
VPS11-208ENST00000621676 KIAA1217Q5T5P2 1943 aa11.35□□□□□ -0.59
VPS11-208ENST00000621676 F8VZ95 297 aa11.35□□□□□ -0.59
VPS11-208ENST00000621676 ADCY3O60266 1144 aa11.35□□□□□ -0.59
VPS11-208ENST00000621676 BRD2P25440 801 aaKnown RBP11.35□□□□□ -0.59
VPS11-208ENST00000621676 MAP2K5Q13163 448 aa11.35□□□□□ -0.59
VPS11-208ENST00000621676 TRIM14Q14142 442 aa11.35□□□□□ -0.59
VPS11-208ENST00000621676 TRADDQ15628 312 aa11.35□□□□□ -0.59
VPS11-208ENST00000621676 DGKDQ16760 1214 aa11.35□□□□□ -0.59
VPS11-208ENST00000621676 CYP4A22Q5TCH4 519 aa11.35□□□□□ -0.59
VPS11-208ENST00000621676 EHBP1Q8NDI1 1231 aa11.35□□□□□ -0.59
VPS11-208ENST00000621676 BBXQ8WY36 941 aaPredicted RBP11.35□□□□□ -0.59
VPS11-208ENST00000621676 C18orf25Q96B23 403 aaPredicted RBP11.35□□□□□ -0.59
VPS11-208ENST00000621676 TJP2Q9UDY2 1190 aa11.35□□□□□ -0.59
VPS11-208ENST00000621676 FAM184BQ9ULE4 1060 aa11.35□□□□□ -0.59
VPS11-208ENST00000621676 NUB1Q9Y5A7 615 aa11.35□□□□□ -0.59
VPS11-208ENST00000621676 POLR3GO15318 223 aaPredicted RBP11.34□□□□□ -0.59
VPS11-208ENST00000621676 EIF3DO15371 548 aaKnown RBP eCLIP11.34□□□□□ -0.59
VPS11-208ENST00000621676 THAP12O43422 761 aa11.34□□□□□ -0.59
VPS11-208ENST00000621676 DKC1O60832 514 aaKnown RBP eCLIP11.34□□□□□ -0.59
VPS11-208ENST00000621676 PPP1R37O75864 691 aa11.34□□□□□ -0.59
VPS11-208ENST00000621676 SERPING1P05155 500 aa11.34□□□□□ -0.59
VPS11-208ENST00000621676 TGFB3P10600 412 aa11.34□□□□□ -0.59
VPS11-208ENST00000621676 EDNRBP24530 442 aa11.34□□□□□ -0.59
VPS11-208ENST00000621676 TNNT3P45378 269 aaPredicted RBP11.34□□□□□ -0.59
VPS11-208ENST00000621676 GCLCP48506 637 aaPredicted RBP11.34□□□□□ -0.59
VPS11-208ENST00000621676 GYS2P54840 703 aa11.34□□□□□ -0.59
VPS11-208ENST00000621676 NCOA4Q13772 614 aa11.34□□□□□ -0.59
VPS11-208ENST00000621676 SYCP2LQ5T4T6 812 aa11.34□□□□□ -0.59
VPS11-208ENST00000621676 FBXO38Q6PIJ6 1188 aa11.34□□□□□ -0.59
VPS11-208ENST00000621676 PPP4R3CPQ6ZMV5 832 aa11.34□□□□□ -0.59
VPS11-208ENST00000621676 NOP9Q86U38 636 aaKnown RBP11.34□□□□□ -0.59
VPS11-208ENST00000621676 NETO2Q8NC67 525 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms